Optimizing Human Intestinal Enteroids for Environmental Monitoring of Human Norovirus

Human noroviruses (HuNoV) are the leading cause of gastrointestinal illness and environmental monitoring is crucial to prevent HuNoV outbreaks. The recent development of a HuNoV cell culture assay in human intestinal enteroids (HIEs) has enabled detection of infectious HuNoV. However, this complex approach requires adaptation of HIEs to facilitate HuNoV replication from environmental matrixes. Integrating data from 200 experiments, we examined six variables: HIE age, HIE basement membrane compounds (BMC), HuNoV inoculum processing, HuNoV inoculum volume, treatment of data below limit of detection (LOD), and cutoff criteria for determining positive HuNoV growth. We infected HIEs with HuNoV GII.4 Sydney positive stool and determined 1.4 × 10³ genome equivalents per HIE well were required for HuNoV replication. HIE age had minimal effect on assay outcomes. LOD replacement and cutoff affected data interpretation, with lower values resulting in higher estimated HuNoV detection. Higher inoculum volumes lead to minimal decreases in HuNoV growth, with an optimal volume of 250uL facilitating capture of low concentrations of HuNoVs present in environmental isolates. Processing of HuNoV inoculum is valuable for disinfection studies and concentrating samples but is not necessary for all HIE applications. This work enhances the HuNoV HIE cell culture approach for environmental monitoring. Future HIE research should report cell age as days of growth and should clearly describe BMC choice, LOD handling, and positive cutoff.

     

Better the nest site you know: decision-making during nest migrations by the Pharaoh’s ant

Animals frequently have to decide between alternative resources and in social insects these individual choices produce a colony-level decision. The choice of nest site is a particularly critical decision for a social insect colony to make, but the decision making process has still only been studied in a few species. In this study, we investigated nest selection by the Pharaoh’s ant, Monomorium pharaonis, a species renowned for its propensity to migrate and its use of multi-component trail pheromones to organise decision-making in other contexts. When presented with the choice of familiar and novel nests of equal quality in a Y set-up, colonies preferentially migrated towards the familiar nest, suggesting a form of colony-level ‘memory’ of potential nest sites. However, if the novel nest was superior to the familiar nest, then colonies began migrating initially to the familiar nest, but then redirected their migration to the superior quality novel nest. This may be an effective method of reducing colony exposure while searching for an optimum nest site. Branches that had previously led to a selected nest were attractive to ants in subsequent migrations, suggesting that trail pheromones mediate the decision making process. The adaptive, pheromone-based organisation of nest-site selection by Pharaoh’s ants matches their ephemeral environment and is likely to contribute to their success as a 'tramp' species.     

Sediment load and timing of sedimentation affect spore establishment in Macrocystis pyrifera and Undaria pinnatifida

Although the frequency and magnitude of sedimentation often varies across coastal landscapes creating patches with different mean sediment loads, duration of sedimentation and rates of sediment resuspension, few studies have documented the emergent effects of spatio-temporal variability in sedimentation. Here, we conducted two laboratory experiments to evaluate such effects on the establishment of Macrocystis pyrifera and Undaria pinnatifida spores. In the first experiment, spore establishment was significantly affected by sediment load (the effective dose required for a 40 % reduction in establishment ranged between 16 and 60 mg sediment l^?1) and sediment regime (relative sedimentation occurring before spore settlement, ~3 times more sediment was required for 20 % reduction in spore establishment when sedimentation occurred after spore settlement). The second experiment demonstrated that the effects of sediment depended on sediment load (spore establishment was 2–4 times greater when sediment load was 200 mg l^?1 relative to 400 mg l^?1), variability in sedimentation (spore establishment was 1.36 times greater with variable than fixed sediment loads), repeated pulses of sedimentation (pulsed sedimentation decreased spore establishment by 59–91 % relative to a single sedimentation event) and timing of sedimentation relative to spore settlement (sedimentation before spore settlement decreased establishment by 51–95 % relative to sedimentation after spore settlement). These results have important implications for ecologists and resource managers attempting to predict the consequences of sedimentation, suggesting that it is not only important to consider sediment load, but also fine-scale temporal variability in sedimentation relative to key life-history events of the impacted organisms.     

Threshold temperatures mediate the impact of reduced snow cover on overwintering freeze-tolerant caterpillars

Decreases in snow cover due to climate change could alter the energetics and physiology of ectothermic animals that overwinter beneath snow, yet how snow cover interacts with physiological thresholds is unknown. We applied numerical simulation of overwintering metabolic rates coupled with field validation to determine the importance of snow cover and freezing to the overwintering lipid consumption of the freeze-tolerant Arctiid caterpillar Pyrrharctia isabella. Caterpillars that overwintered above the snow experienced mean temperatures 1.3°C lower than those below snow and consumed 18.36 mg less lipid of a total 68.97-mg reserve. Simulations showed that linear temperature effects on metabolic rate accounted for only 30% of the difference in lipid consumption. When metabolic suppression by freezing was included, 93% of the difference between animals that overwintered above and below snow was explained. Our results were robust to differences in temperature sensitivity of metabolic rate, changes in freezing point, and the magnitude of metabolic suppression by freezing. The majority of the energy savings was caused by the non-continuous reduction in metabolic rate due to freezing, the first example of the importance of temperature thresholds in the lipid use of overwintering insects.     

Initial effects of light armored vehicle use on grassland vegetation at Fort Lewis, Washington

Sustainable use of military training lands requires understanding and prediction of the effects of military vehicles on vegetation. We examined the initial impacts of an 8-wheeled, light armored vehicle (LAV) on grassland vegetation at Fort Lewis, Washington. The LAV drove replicate spiral paths at two starting velocities, 10.3 and 5.1 m s(-1). The disturbed width (width of ground impacted by the tires) increased as turning radius decreased, but was unaffected by vehicle velocity. An inverse-exponential model predicted disturbed width (r(2)=0.68) at all turning radii for both velocities combined. In low-velocity spirals, and for straight tracking (turning radius>40 m) and moderate turns (radius 20-40 m) in high-velocity spirals, all vegetation damage was imprint (plants flattened by wheels). During sharp (radius <20 m), high-velocity turns, most or all of the disturbed width was scraped free of surface vegetation and soil, which was piled to the outside of each tire track. Total plant cover (all species) was not affected by track curvature in low-velocity spirals, but decreased in the order straight tracking>moderate turns>sharp turns in high-velocity spirals. In low-velocity spirals, post-tracking cover of several plant growth forms (non-native species, perennial species, sod-forming grasses) was similar to pre-tracking cover, but in high-velocity spirals, post-tracking cover of these growth forms decreased in the order straight > or =moderate=sharp. Cover of native species and forbs decreased more in high- than in low-velocity spirals, but was unaffected by curvature. Pre- and post-tracking cover of annual species, bunchgrasses, and shrubs was < or =3%. The most severe vegetation damage caused by operation of wheeled LAVs on grasslands is associated with sharp, high-velocity turns.     

The acoustic structure of chimpanzee pant-hooting facilitates chorusing

Duetting or chorusing behaviour occurs in a wide variety of animals and is posited to fulfil various important functions including territory defence and social bonding. The structure of calls produced in choruses might be shaped in a way that facilitates such joint vocal displays. In this study, we test the hypothesis that flexibility to modify the temporal structure of chimpanzee pant-hoots, vocalisations often given jointly with other individuals, facilitates chorusing. The results of this study, which was conducted on two communities of wild chimpanzees in Uganda, support this hypothesis. First, the duration of the build-up phase of the pant-hoot correlated with the latency with which the partner joined in the call, suggesting that males prolong the duration of the build-up to allow others to join in the call and to increase the likelihood of a chorus occurring. Second, the loud climax phases were significantly longer when produced in choruses than alone, which suggests that males prolong this part of the call when calling in choruses. Within chorus pant-hoots, there was a positive relationship between the number of climax elements given by two calling partners, suggesting that males adjust the temporal structure of their call to mirror their partner's call. We conclude that the basic acoustic structure of chimpanzee pant-hoots and the flexibility with which males adjust the duration of the constituent phases promote chorusing, and that the temporal structure of this rather stereotyped vocalisation is sensitive to fine details of the vocal responses of the audience.     

Socioecological influences on the dispersal of female mountain gorillas—evidence of a second folivore paradox

Socioecological models indicate that the group structure and female dispersal patterns of primates are determined primarily by the abundance and distribution of food, predation pressures, and infanticide risks. In response to those influences, females of folivorous primates are considered relatively free to disperse into groups with the optimal size and structure. Yet some folivores live in small groups despite a potentially higher risk of predation, an apparent inconsistency known as the folivore paradox. This paper examines the female dispersal of a folivorous primate, the Virunga mountain gorillas. Mountain gorillas currently have no natural predators, but this species presents a different version of the folivore paradox: why do 50–60% of females reside in smaller one-male groups despite a higher risk of infanticide? In this study, females left one-male groups more frequently than multimale groups, but transfer destinations were not consistently biased toward multimale groups and those groups did not have higher immigration rates. We found no evidence of dispersal to avoid feeding competition within large groups, even as they have become three to five times larger than average. Thus, the lack of a consistent bias toward multimale groups was not because they are typically larger than one-male groups. Instead, the apparent inconsistencies may reflect limited female transfer opportunities, other influences on dispersal, and possibly an evolutionary disequilibrium in which current behavior does not optimize fitness.     

Individual variation in foraging behavior reveals a trade-off between flexibility and performance of a top predator

There is increasing evidence that behavioral flexibility is associated with the ability to adaptively respond to environmental change. Flexibility can be advantageous in some contexts such as exploiting novel resources, but it may come at a cost of accuracy or performance in ecologically relevant tasks, such as foraging. Such trade-offs may, in part, explain why individuals within a species are not equally flexible. Here, we conducted a reversal learning task and predation experiment on a top fish predator, the Northern pike (Esox lucius), to examine individual variation in flexibility and test the hypothesis that an individual’s behavioral flexibility is negatively related with its foraging performance. Pikes were trained to receive a food reward from either a red or blue cup and then the color of the rewarded cup was reversed. We found that pike improved over time in how quickly they oriented to the rewarded cup, but there was a bias toward the color red. Moreover, there was substantial variation among individuals in their ability to overcome this red bias and switch from an unrewarded red cup to the rewarded blue cup, which we interpret as consistent variation among individuals in behavioral flexibility. Furthermore, individual differences in behavioral flexibility were negatively associated with foraging performance on ecologically relevant stickleback prey. Our data indicate that individuals cannot be both behaviorally flexible and efficient predators, suggesting a trade-off between these two traits.