Myxococcus xanthus'' killed cells as inducers of struvite crystallization. Its possible role in the biomineralization processes

We studied the possibility of struvite formation using killed cells of Myxococcus xanthus. Cells were killed by heat, UV light and sonication. In all cases, we show that struvite crystallization occurs and we propose that the dead cells or cell debris can act by themselves as heterogeneous crystallization nuclei. We also show that the slime, produced by Myxococcus in a large quantities, is not involved in this process.     

Characteristics and distribution of analyzed metals in soil profiles in the vicinity of a postflotation waste site in the Bukowno region, Poland

The lead–zinc industry in the Bukowno region of southern Poland has polluted the surface layer of the surrounding soils mainly with lead (Pb), cadmium (Cd), zinc (Zn), arsenic (As), and thallium (Tl). Analysis of six soil profiles, taken on the east side of the postflotation waste site of the Mining and Metallurgical Plants ZGH "Boles?aw" in Bukowno, showed that they were podzol soils, taking form of loose sands with neutral pH and reducing conditions. Concentration of organic matter in the horizons ranged from 2 to 80 %. The main components of the mineral soil were quartz, carbonates, K-feldspars, plagioclases, and micas (sericite). The highest total concentrations of metals were found in the O, A, and B horizons. Over 90 % of the Cd content, 80 % of the Pb content, 60 % of the Zn content, ～60 % of the Tl content, and 20 % of the As content occurred as mobile forms. The corresponding total concentrations were 10 mg/kg Cd, 922 mg/kg Pb, 694 mg/kg Zn, <1 mg/kg Tl, and <5 mg/kg As. This can potentially be taken up from the soil and transported in the trophic chain. Comparing the total metal content with the legal limits in Poland, it is observed, that the investigated soils exceeded the permissible levels of Cd, Pb, and Zn for agricultural soils. Arsenic and Tl are not reflected in the chemical quality of soil classifications.     

The clinical utility of microarray technologies applied to prenatal cytogenetics in the presence of a normal conventional karyotype: a review of the literature

The clinical utility of microarray technologies when used in the context of prenatal diagnosis lies in the technology's ability to detect submicroscopic copy number changes that are associated with clinically significant outcomes. We have carried out a systematic review of the literature to calculate the utility of prenatal microarrays in the presence of a normal conventional karyotype. Amongst 12 362 cases in studies that recruited cases from all prenatal ascertainment groups, 295/12 362 (2.4%) overall were reported to have copy number changes with associated clinical significance (pCNC), 201/3090 (6.5%) when ascertained with an abnormal ultrasound, 50/5108 (1.0%) when ascertained because of increased maternal age and 44/4164 (1.1%) for all other ascertainment groups (e.g. parental anxiety and abnormal serum screening result). When additional prenatal microarray studies are included in which ascertainment was restricted to fetuses with abnormal ultrasound scans, 262/3730 (7.0%) were reported to have pCNCs. © 2013 The Authors. Prenatal Diagnosis published by John Wiley & Sons Ltd.     

Genetic counselling and ethical issues with chromosome microarray analysis in prenatal testing

Molecular karyotyping using chromosome microarray analysis (CMA) detects more pathogenic chromosomal anomalies than classical karyotyping, making CMA likely to become a first tier test for prenatal diagnosis. Detecting copy number variants of uncertain clinical significance raises ethical considerations. We consider the risk of harm to a woman or her fetus following the detection of a copy number variant of uncertain significance, whether it is ethically justifiable to withhold any test result information from a woman, what constitutes an ‘informed choice’ when women are offered CMA in pregnancy and whether clinicians are morally responsible for ‘unnecessary’ termination of pregnancy. Although we are cognisant of the distress associated with uncertain prenatal results, we argue in favour of the autonomy of women and their right to information from genome-wide CMA in order to make informed choices about their pregnancies. We propose that information material to a woman's decision-making process, including uncertain information, should not be withheld, and that it would be paternalistic for clinicians to try to take responsibility for women's decisions to terminate pregnancies. Non-directive pre-test and post-test genetic counselling is central to the delivery of these ethical objectives. © 2012 John Wiley & Sons, Ltd.     

Bioconcentration factors of mercury by Parasol Mushroom (Macrolepiota procera)

To examine bioconcentration factors (BCFs) of mercury by Parasol Mushroom (Macrolepiota procera) roughly similarly sized (a cap diameter) fruiting bodies of this fungus and underlying soil (0–10 cm) samples were collected at 15 sites in Poland between 1995 and 2003. The total mercury content of the individual caps and stipes of Parasol Mushroom ranged from 0.05 to 22 mg Hg/kg dry matter (d.m.) and from 0.05 to 20 mg Hg/kg d.m., while the means were from 1.1 to 8.4 mg Hg/kg d.m. and from 0.83 to 6.8 mg Hg/kg d.m., respectively. The caps generally contained higher concentrations of mercury when compared to stipes, and the means of the cap to stipe mercury concentration quotient ranged from 1.3 to 4.6. The range of mercury concentration in topsoil samples collected at the sites where the fruiting bodies were collected was from 0.01 to 0.54 mg/g d.m. (means ranged from 0.022 to 0.36 mg/g d.m.). The BCFs factors for total mercury varied from 0.52 to 470 for individual caps and 0.52 to 360 for stipes, while average values, depending on the site, were from 16 to 220 and from 7.6 to 130 for caps and stipes, respectively.     

Active and legacy mining in an arid urban environment: challenges and perspectives for Copiapó, Northern Chile

Urban expansion in areas of active and legacy mining imposes a sustainability challenge, especially in arid environments where cities compete for resources with agriculture and industry. The city of Copiapó, with 150,000 inhabitants in the Atacama Desert, reflects this challenge. More than 30 abandoned tailings from legacy mining are scattered throughout its urban and peri-urban area, which include an active copper smelter. Despite the public concern generated by the mining-related pollution, no geochemical information is currently available for Copiapó, particularly for metal concentration in environmental solid phases. A geochemical screening of soils (n = 42), street dusts (n = 71) and tailings (n = 68) was conducted in November 2014 and April 2015. Organic matter, pH and elemental composition measurements were taken. Notably, copper in soils (60–2120 mg/kg) and street dusts (110–10,200 mg/kg) consistently exceeded international guidelines for residential and industrial use, while a lower proportion of samples exceeded international guidelines for arsenic, zinc and lead. Metal enrichment occurred in residential, industrial and agricultural areas near tailings and the copper smelter. This first screening of metal contamination sets the basis for future risk assessments toward defining knowledge-based policies and urban planning. Challenges include developing: (1) adequate intervention guideline values; (2) appropriate geochemical background levels for key metals; (3) urban planning that considers contaminated areas; (4) cost-effective control strategies for abandoned tailings in water-scarce areas; and (5) scenarios and technologies for tailings reprocessing. Assessing urban geochemical risks is a critical endeavor for areas where extreme events triggered by climate change are likely, as the mud flooding that impacted Copiapó in late March 2015.     

Global change shifts vegetation and plant-parasite interactions in a boreal mire

The aim of this study was to detect vegetation change and to examine trophic interactions in a Sphagnum-dominated mire in response to raised temperature and nitrogen (N) addition. A long-term global-change experiment was established in 1995, with monthly additions of N (30 kg x ha(-1) x yr(-1)) and sulfur (20 kg x ha(-1) x yr(-1)) during the vegetation period. Mean air temperature was raised by 3.6 degrees C with warming chambers. Vegetation responses were negligible for all treatments for the first four years, and no sulfur effect was seen during the course of the experiment. However, after eight years of continuous treatments, the closed Sphagnum carpet was drastically reduced from 100% in 1995 down to 41%, averaged over all N-treated plots. Over the same period, total vascular plant cover (of the graminoid Eriophorum vaginatum and the two dwarf-shrubs Andromeda polifolia and Vaccinium oxycoccos) increased from 24% to an average of 70% in the N plots. Nitrogen addition caused leaf N concentrations to rise in the two dwarf-shrubs, while for E. vaginatum, leaf N remained unchanged, indicating that the graminoid to a larger extent than the dwarf-shrubs allocated supplemented N to growth. Concurrent with foliar N accumulation of the two dwarf-shrubs, we observed increased disease incidences caused by parasitic fungi, with three species out of 16 showing a significant increase. Warming caused a significant decrease in occurrence of three parasitic fungal species. In general, decreased disease incidences were found in temperature treatments for A. polifolia and in plots without N addition for V. oxycoccos. The study demonstrates that both bryophytes and vascular plants at boreal mires, only receiving background levels of nitrogen of about 2 kg x ha(-1) x yr(-1), exhibit a time lag of more than five years in response to nitrogen and temperature rise, emphasizing the need for long-term experiments. Moreover, it shows that trophic interactions are likely to differ markedly in response to climate change and increased N deposition, and that these interactions might play an important role in controlling the change in mire vegetation composition, with implications for both carbon sequestration and methane emission.