Challenges in non-invasive prenatal screening for sub-chromosomal copy number variations using cell-free DNA

Non-invasive prenatal screening (NIPS) has revolutionized the approach to prenatal fetal aneuploidy screening. Many commercial providers now offer analyses for sub-chromosomal copy number variations (CNVs). Here, we review the use of NIPS in the context of screening for microdeletions and microduplications, issues surrounding the choice of disorders tested for, and the advantages and disadvantages associated with the inclusion of microdeletions to current NIPS. Several studies have claimed benefits; however, we suggest that microdeletions have not demonstrated a low enough false positive rate to be deemed practical or ethically acceptable, especially considering their low positive predictive values. Because a positive NIPS result should be confirmed using diagnostic techniques, and false positive rates are as high as 90% for some microdeletions, diagnostic testing seems preferable when the goal is to maximize the detection of microdeletion or microduplication syndromes.     

Use of coatings to minimise acid emissions during ceramic tile firing

The manufacture of traditional ceramic products (ceramic tiles, roof tiles, and bricks) is often associated with the emission of F, Cl, and S compounds during the firing stage. According to the literature, fluorine emissions can be reduced by adding CaCO₃ to the raw materials mixture used in fabricating these products. However, data available to the authors indicate that this procedure, which has been successfully applied in manufacturing structural ceramics (roof tiles and bricks), is ineffective in ceramic tile manufacture and modifies tile end properties.This paper examines the possibility of reducing such emissions by applying coatings of alkaline-earth carbonates on to the ceramic tile bottom surface to retain the acid compounds emitted during tile firing. The effectiveness of MgCO₃, CaCO₃, SrCO₃, and BaCO₃ coatings for retaining these acid emissions was studied, using the evolved gas analysis (EGA) technique with a TG-DSC-FTIR-QM instrument.The SrCO₃ coating was found to provide the greatest retention, showing that SO₂ and HCl were retained more efficiently than HF. The presence of fluorides, chlorides, and sulphates of Ca, Sr, and Ba was verified in the respective fired coatings, confirming the existence of chemical reactions between the emitted acid compounds and the coating materials at high temperature.     

First REP-LECOTOX Workshop—ecotoxicogenomics: the challenge of integrating genomics/proteomics/metabolomics into aquatic and terrestrial ecotoxicology

Environmental Science and Pollution Research -     

A Call for Urgent Monitoring of Food and Water Security Based on Relevant Indicators for the Arctic

This perspective paper argues for an urgent need to monitor a set of 12 concrete, measurable indicators of food and water security in the Arctic over time. Such a quantitative indicator approach may be viewed as representing a reductionist rather than a holistic perspective, but is nevertheless necessary for actually knowing what reality aspects to monitor in order to accurately understand, quantify, and be able to project critical changes to food and water security of both indigenous and non-indigenous people in the Arctic. More relevant indicators may be developed in the future, taking us further toward reconciliation between reductionist and holistic approaches to change assessment and understanding. However, the potential of such further development to improved holistic change assessment is not an argument not to urgently start to monitor and quantify the changes in food and water security indicators that are immediately available and adequate for the Arctic context.     

Phylogeographic structure of false clownfish, Amphiprion ocellaris, explained by sea level changes on the Sunda shelf

The phylogenetic structure of the anemonefish Amphiprion ocellaris was established based on sequence data generated for the 5′ end of the cytochrome b (cytb) gene at 11 sites throughout Southeast Asia. Considerable genetic structuring was observed throughout the range of A. ocellaris. The region has a complex geography, with the Sunda shelf having been exposed during the lower sea levels associated with periods of glaciation. The direction of subsequent flooding of the Sunda shelf, as a direct consequence of the retreating glacial sheets, can be predicted based on the major river drainage systems in the region. Much of the phylogeographic structure, including levels of intra-site genetic variation, can be explained in terms of the “seeding” of sites on the Sunda shelf, by those on the shelf rim, as sea levels rose. We often found surface ocean currents in the region, which should influence larval dispersal, to be poorly correlated with phylogeographic structure. Several geographically close sites, which appear to be connected by surface currents, showed significant genetic stratification. We hypothesise that the phylogeographic structure of A. ocellaris is more reminiscent of the Pleistocene sea level changes than surface currents. The high contribution of sea level changes to the phylogeographic structure was also supported by several missing haplotypes in the generated spanning network. Cytb DNA sequences generated for recently recruited A. ocellaris individuals sampled from Singapore indicate that, on a local scale, there is a directional inflow of recruits, which is dependent on the monsoon seasons. The nature of dispersal and genetic structure of reef fish species found on the Sunda shelf is clearly complex, and should take into consideration past phylogeographic events. Received: 13 November 1999 / Accepted: 12 July 2000     

Cleaner tanning practices for tannery pollution abatement: Role of enzymes in eco-friendly vegetable tanning

Concern about pollution related problems in the global scenario are persuading all the processing industries to adopt cleaner manufacturing practices. Thus, the leather industry is also under pressure to look for effective alternative tanning materials for chromium. Natural products like vegetable tannins are regaining importance. However, there are limitations in the use of vegetable tanning materials because of its high organic load in the effluent, which are difficult to degrade leading to high chemical oxygen demand (COD). Moreover, conventional vegetable tanning process requires partial pickling that involves the use of sodium chloride, to suppress osmotic swelling. This results in very high amount of total dissolved solid (TDS) content in wastewaters. In this investigation, an attempt has been made to design an eco-friendly vegetable tanning process combining pickle-free tanning and application of proteolytic enzymes to improve the exhaustion of vegetable tannins. Such an approach has resulted in more than 95% tannin exhaustion in the case of the experimental process, an increase of 10% compared with the conventional vegetable tanning process. The tanned leathers showed slight improvement in hydrothermal stability. Physical and tactile evaluation of experimental leathers has been better than conventionally tanned leathers. Surface colour values illustrated negligible variation in colour and shade between control and experimental leathers. The resultant leather showed opened up, split compact fibre structure that has been well coated, indicating that the enzyme assisted tanning process did not bring about any major change or destruction on the fibre structure of the leathers. The optimized system has been field tested in a commercial tannery. The results showed that the enzyme assisted tanning process is efficient in terms of improved quality of leather and also led to reduction in total solids (TS), chlorides and COD loads. The enzyme assisted tanning system presented appears to be a viable option for combating pollution arising from the conventional vegetable tanning system.     

Interaction effects of organic load and cycle time in an AsBr applied to a personal care industry wastewater treatment

A mechanically stirred anaerobic sequencing batch reactor (ASBR) containing granular biomass was applied to the treatment of a wastewater simulating the effluent from a personal care industry. The ASBR was operated with cycle lengths (t_C) of 8, 12 and 24 h and applied volumetric organic loads (AVOL) of 0.75, 0.50 and 0.25 gCOD/L.d, treating 2.0 L liquid medium per cycle. Stirring frequency was 150 rpm and the reactor was kept in an isothermal chamber at 30 °C. Increase in t_C resulted in efficiency increase at constant AVOL, reaching 77% at t_C of 24 h versus 69% at t_C of 8 h. However, efficiency decreased when AVOL decreased as a function of increasing t_C, due to the lack of substrate in the reaction medium. Moreover, replacing part of the wastewater by a chemically balanced synthetic one did not yield the expected effect and system efficiency dropped.     

Evaluation of methylene blue and riboflavin for the photosensitized degradation of ethylene glycol

Degradation rates ranging from 0.22 ± 0.11 to 1.52 ± 0.50 mg/L-h were measured for ethylene glycol in riboflavin solutions exposed to natural sunlight. Significant degradation rates were noted in systems using 6 and 10 mg/L riboflavin at pH values of 4, 7, and 10. No significant degradation was found in systems using methylene blue as the photosensitizing agent. Possible mechanisms for ethylene glycol degradation include a combination hydrogen or electron abstraction by an excited photosensitizer and reaction with singlet oxygen or reaction with superoxide radicals.     

A simulation model for the management of low density recreational areas

In order to take account of the congestion externalities associated with increased use intensity during a given period at a low density recreational resource, it is necessary to determine the effects of alternative use levels on the expected quality of each individual's experience. This paper describes a simulation model for wilderness recreation designed to provide such measures. In order to illustrate the model it is applied to the Spanish Peaks Areas in Montana.