Study of the biodegradation process of polychlorinated biphenyls in liquid medium and soil by a new isolated aerobic bacterium (Janibacter sp.)

We have isolated and characterised a novel aerobic bacterial strain, designated MS3-02, belonging to the genus Janibacter sp. The capability of this new strain to degrade polychlorinated biphenyls (PCBs) in a commercial mixture (Aroclor 1242) in liquid medium and in soil (sterile and non sterile soil), under laboratory scale, has been evaluated. MS3-02 was isolated from the soil around of an incinerator, located in the east of Madrid (Spain). Gas-chromatographic analysis showed that MS3-02 was able to reduce most peaks observed in the chromatogram between 70% and 100% after seven days of incubation in a culture mineral medium containing yeast extract, but without the addition of biphenyl. The presence of biphenyl in the culture medium decreased the rate of PCB degradation by this bacterium. Comparing the performance of the MS3-02 in liquid culture medium and in soil, degradation was less efficient in sterile soil and still less efficient in non sterile soil. Under the best conditions (sterile soil and 20 weeks of incubation) MS3-02 was able to reduce, between 50% and 100%, nine of the main gas-chromatographic peaks in Aroclor 1242.     

In situ monitoring of urban air in Southern Italy with the Tradescantia micronucleus bioassay and semipermeable membrane devices (SPMDs)

This study was designed to assess toxic and genotoxic compounds in the urban air of Caserta, South Italy using cuttings from the plant Tradescantia #4430. In situ monitoring of gaseous pollutans was made at 17 sampling points in two seasons of the year. Genotoxicity was evaluated by recording the micronuclei in meiotic pollen mother cells (Trad-MCN assay). In addition, the passive sampler semipermeable membrane devices (SPMDs) were deployed at the sampling points with a significant increase in micronuclei frequency. SPMDs concentrated priority organic pollutants were identified by high performance liquid chromatography and gas chromatography, while toxicity and mutagenesis were assessed on the bacterium Vibrio fischeri using the Microtox and Mutatox systems respectively. Significant toxic and mutagenic effects were observed at different points on the town grid and SPMDs effectively concentrated trace contaminants. The relationship between what was present in the air sampled by SPMDs and the micronuclei frequency was also explored.     

Carrier detection of duchenne muscular dystrophy through analysis of dna from deciduous teeth of a dead affected child

The sister of a child affected by Duchenne muscular dystrophy (DMD) was referred for genetic counselling to assess the risk of her being a carrier. Her brother had died 15 years previously at the age of 8. There were no other affected males in the family. There were no methods for DNA investigation at the time of the child's death and the family had never been studied for linkage with polymorphic probes on the chromosomal region Xp21. The only tissue from which an assessment of the risk could be made by DNA linkage analysis was two of the child's deciduous teeth that the parents had kept. DNA was extracted using a protocol described for the recovery of ancient DNA from museum specimens and archaeological finds. Multiplex amplification did not reveal deletions in 19 exons spanning the hot-spot regions for deletions within the dystrophin gene in Xp21. Linkage analysis using three highly polymorphic microsatellites demonstrated that the sister had not received the X chromosome borne by her brother. These results show that DNA extracted from teeth is a reliable source for molecular diagnosis.     

The role of materials selection in the urban heat island effect in dry mid-latitude climates

This work investigates the role of materials selected for different urban surfaces (e.g. on building walls, roofs and pavements) in the intensity of the urban heat island (UHI) phenomenon. Three archetypal street-canyon geometries are considered, reflecting two-dimensional canyon arrays with frontal packing densities (λ_f) of 0.5, 0.25 and 0.125 under direct solar radiation and ground heating. The impact of radiative heat transfer in the urban environment is examined for each of the different built packing densities. A number of extreme heat scenarios were modelled in order to mimic conditions often found at low- to mid-latitudes dry climates. The investigation involved a suite of different computational fluid dynamics (CFD) simulations using the Reynolds-Averaged Navier–Stokes equations for mass and momentum coupled with the energy equation as well as using the standard k-ε turbulence model. Results indicate that a higher rate of ventilation within the street canyon is observed in areas with sparser built packing density. However, such higher ventilation rates were not necessarily found to be linked with lower temperatures within the canyon; this is because such sparser geometries are associated with higher heat transfer from the wider surfaces of road material under the condition of direct solar radiation and ground heating. Sparser canyon arrays corresponding to wider asphalt street roads in particular, have been found to yield substantially higher air temperatures. Additional simulations indicated that replacing asphalt road surfaces in streets with concrete roads (of different albedo or emissivity characteristics) can lead up to a ~5 °C reduction in the canyon air temperature in dry climates. It is finally concluded that an optimized selection of materials in the urban infrastructure design can lead to a more effective mitigation of the UHI phenomenon than the optimisation of the built packing density.     

Acute toxicity of roundup to the nontarget organism Hyalella curvispina. Laboratory and field study

Glyphosate is the most used pesticide in Argentina. Hyalella curvispina is a widely distributed and commonly abundant component of the invertebrate assemblages in shallow waters of southern South America. The aim of this study was to assess the acute toxicity of the increasingly common Roundup Full II®, commercial formulation of the herbicide glyphosate (66.2% active ingredient), to H. curvispina in laboratory and field assessments. The mean estimated 48-h LC₅₀ of Roundup was 9.9 ± 1.7 mg L^?1. In a field experiment Roundup was applied to soybean plots. Simulated rain was generated the following day by means of irrigation sprinkler equipment. H. curvispina was exposed to runoff water and soy leaves. No mortality was observed. It is suggested that Roundup crop applications represent a low risk of acute toxicity to H. curvispina adults inhabiting water bodies adjacent to crop fields.     

A method for measuring low-weight carboxylic acids from biosolid compost

Concentration of low-weight carboxylic acids (LWCA) is one of the important parameters that should be taken into consideration when compost is applied as soil improver for plant cultivation, because high amounts of LWCA can be toxic to plants. The present work describes a method for analysis of LWCA in compost as a useful tool for monitoring compost quality and safety. The method was tested on compost samples of two different ages: 3 (immature) and 6 (mature) months old. Acids from compost samples were extracted at high pH, filtered, and freeze-dried. The dried sodium salts were derivatized with a sulfuric acid-methanol mixture and concentrations of 11 low-weight fatty acids (C1-C10) were analyzed using headspace gas chromatography. The material was analyzed with two analytical techniques: the external calibration method (tested on 11 LWCA) and the standard addition method (tested only on formic, acetic, propionic, butyric, and iso-butyric acids). The two techniques were compared for efficiency of acids quantification. The method allowed good separation and quantification of a wide range of individual acids with high sensitivity at low concentrations. Detection limit for propionic, butyric, caproic, caprylic, and capric acids was 1 mg kg(-1) compost; for formic, acetic, valeric, enanthoic and pelargonic acids it was 5 mg kg(-1) compost; and for iso-butyric acid it was 10 mg kg(-1) compost. Recovery rates of LWCA were higher in 3-mo-old compost (57-99%) than in 6-mo-old compost (29-45%). In comparison with the external calibration technique the standard addition technique proved to be three to four times more precise for older compost and two times for younger compost. Disadvantages of the standard addition technique are that it is more time demanding and laborious.     

Using NDVI to Assess Vegetative Land Cover Change in Central Puget Sound

We used the Normalized Difference Vegetation Index (NDVI) in the rapidly growing Puget Sound region over three 5-year time blocks between 1986–1999 at three spatial scales in 42 Watershed Administrative Units (WAUs) to assess changes in the amounts and patterns of green vegetation. On average, approximately 20% of the area in each WAU experienced significant NDVI change over each 5-year time block. Cumulative NDVI change over 15 years (summing change over each 5-year time block) was an average of approximately 60% of each WAU, but was as high as 100% in some. At the regional scale, seasonal weather patterns and green-up from logging were the primary drivers of observed increases in NDVI values. At the WAU scale, anthropogenic factors were important drivers of both positive and negative NDVI change. For example, population density was highly correlated with negative NDVI change over 15 years (r = 0.66, P < 0.01), as was road density (r = 0.71, P < 0.01). At the smallest scale (within 3 case study WAUs) land use differences such as preserving versus harvesting forest lands drove vegetation change. We conclude that large areas within most watersheds are continually and heavily impacted by the high levels of human use and development over short time periods. Our results indicate that varying patterns and processes can be detected at multiple scales using changes in NDVIa values.     

First Europe-wide correlation analysis identifying factors best explaining the total nitrogen concentration in mosses

In this study, the indicative value of mosses as biomonitors of atmospheric nitrogen (N) depositions and air concentrations on the one hand and site-specific and regional factors which explain best the total N concentration in mosses on the other hand were investigated for the first time at a European scale using correlation analyses. The analyses included data from mosses collected from 2781 sites across Europe within the framework of the European moss survey 2005/6, which was coordinated by the International Cooperative Programme on Effects of Air Pollution on Natural Vegetation and Crops (ICP Vegetation). Modelled atmospheric N deposition and air concentration data were calculated using the Unified EMEP Model of the European Monitoring and Evaluation Programme (EMEP) of the Convention on Long-range Transboundary Air Pollution (CLRTAP). The modelled deposition and concentration data encompass various N compounds. In order to assess the correlations between moss tissue total N concentrations and the chosen predictors, Spearman rank correlation analysis and Classification and Regression Trees (CART) were applied. The Spearman rank correlation analysis showed that the total N concentration in mosses and modelled N depositions and air concentrations are significantly correlated (0.53 ≤ r_s ≤ 0.68, p < 0.001). Correlations with other predictors were lower than 0.55. The CART analysis indicated that the variation in the total N concentration in mosses was best explained by the variation in NH₄⁺ concentrations in air, followed by NO₂ concentrations in air, sampled moss species and total dry N deposition. The total N concentrations in mosses mirror land use-related atmospheric concentrations and depositions of N across Europe. In addition to already proven associations to measured N deposition on a local scale the study at hand gives a scientific prove on the association of N concentration in mosses and modelled deposition at the European scale.     

Polychlorinated biphenyls-containing electrical insulating oil contaminated soil treatment with calcium and magnesium peroxides

Calcium and magnesium peroxides were applied for the treatment of soil contaminated by polychlorinated biphenyls-containing electrical insulating oil (Aroclor 1016). The removal of PCB-containing electrical insulating oil was achieved with the addition of either calcium peroxide or magnesium peroxide alone and dependent on dosages of the chemical. A 21-d treatment of 60% watered soil with the moderate addition (chemical/oil weight ratio of 0.005/1) of either calcium peroxide or magnesium peroxide resulted in nearly complete (96 ± 2%) oil removal, unsubstantial increase in soil pH and almost no changes in oxygen consumption and dehydrogenase activity, making it suitable for the soil decontamination.