Slope,aspect and climate: Spatially explicit and implicit models of topographic microclimate in chalk grassland

The slope and aspect of a vegetated surface strongly affects the amount of solar radiation intercepted by that surface. Solar radiation is the dominant component of the surface energy balance and influences ecologically critical factors of microclimate, including near-surface temperatures, evaporative demand and soil moisture content. It also determines the exposure of vegetation to photosynthetically active and ultra-violet wavelengths. Spatial variation in slope and aspect is therefore a key determinant of vegetation pattern, species distribution and ecosystem processes in many environments. Slope and aspect angle may vary considerably over distances of a few metres, and fine-scale species’ distribution patterns frequently follow these topographic patterns. The availability of suitable microclimate at such scales may be critical for the response of species distributions to climatic change at much larger spatial scales. However, quantifying the relevant microclimatic gradients is not straightforward, as the potential variation in solar radiation flux under clear-sky conditions is modified by local and regional variations in cloud cover, and interacts with long-wave radiation exchange, local meteorology and surface characteristics.     

Molecular dating and biogeography of the neritic krill Nyctiphanes

The genus Nyctiphanes (Malacostraca, Euphausiacea) comprises four neritic species that display antitropical geographic distribution in the Pacific (N. simplex and N. australis) and Atlantic (N. couchii and N. capensis) Oceans. We studied the origin of this distribution applying methods for phylogenetic reconstruction and molecular dating of nodes using a Bayesian MCMC analysis and the DNA sequence information contained in mtDNA 16S rDNA and cytochrome oxidase (COI). We tested hypotheses of vicariance by contrasting the time estimates of cladogenesis with the onset of the major barriers to ocean circulation. It was estimated that Nyctiphanes originated in the Pacific Ocean during the Miocene, with a lower limit of 18 miilion years ago (Mya). An Atlantic–Pacific cladogenic event (95% HPD 3.2–9.6) took place after the closure of the Tethyan Sea, suggesting that dispersal occurred from the Indo-Pacific, most likely via southern Africa. Similarly, the antitropical distribution pattern observed in the eastern Atlantic Ocean likely resulted from recent Pliocene–Pleistocene (95% HPD 1.0–4.97) northward dispersal from the southern hemisphere. Our results imply that dispersal appears to have had a significant role to play in the evolution of this group. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Is bird song a reliable signal of aggressive intent?

In this commentary, we discuss recent experiments on the reliability of bird song as a signal of aggressive intent during territorial conflicts. We outline relevant theoretical views on honest signaling, highlighting the vulnerability handicap hypothesis as a possible explanation for soft song’s reliability in predicting attack. We also sketch possible methods of testing whether soft song agrees with key predictions of the vulnerability handicap hypothesis. Finally, we suggest possible empirical refinements that may be useful in future studies of signals of intent, both in birds and in animals broadly. In particular, we argue that future studies of intent should strive to incorporate the following elements into their experimental design: (1) multi-modal signal components, (2) interaction dynamics, and (3) minimal time intervals. Simulated exchanges using dynamically interactive models may provide a powerful means of incorporating all three of these design features simultaneously.

Emergy analysis applied to the estimation of the recovery of costs for water services under the European Water Framework Directive

In this paper, the European Union's Water Framework Directive 2000/60/EC (WFD) that is intended to foster protection of water resources is examined, focusing on the improvement of ecological and chemical quality of surface and groundwater. The WFD includes the concept of full cost recovery (FCR) in accordance with the Polluter-Pays Principle, as one of the tools of an adequate and sustainable water resource management system. The WFD defines three different costs associated with water: resource costs (RC), financial costs (FC), and environmental costs (ECs).The FCR of water is examined from a biophysical perspective using emergy evaluation to: (1) establish resource values of water from different sources, (2) establish the full economic costs associated with supplying water, and (3) the societal costs of water that is used incorrectly; from which the resource costs, financial costs, and environmental costs, respectively, can be computed. Financial costs are the costs associated with providing water including energy, materials, labor and infrastructure. The emergy based monetary values vary between 0.15 and 1.73 €/m³ depending on technology. The emergy based, global average resource value (from which resource costs can be computed) is derived from two aspects of water: its chemical potential and its geopotential. The chemical potential monetary value of different sources such as rain, groundwater, and surface water derived from global averages of emergy inputs varies from 0.03 to 0.18 €/m³, depending on source, and the geopotential values vary from 0.03 to 2.40 €/m³, depending on location in the watershed. The environmental costs of water were averaged for the county of Spain and were 1.42 €/m³.Time of year and spatial location within the watershed ultimately influence the resource costs (computed from emergy value of chemical potential and geopotential energy) of water. To demonstrate this spatial and temporal variability, a case study is presented using the Foix watershed in northeastern Spain. Throughout the year, the resource value of water varies from 0.21 to 3.17 €/m³, depending on location within the watershed. It is concluded that FCR would benefit from the evaluation of resource costs using spatially and temporally explicit emergy accounting.     

On the evidence for species coexistence: a critique of the coexistence program

A major challenge in ecology is to understand how the millions of species on Earth are organized into biological communities. Mechanisms promoting coexistence are one such class of organizing processes, which allow multiple species to persist in the same trophic level of a given web of species interactions. If some mechanism promotes the coexistence of two or more species, each species must be able to increase when it is rare and the others are at their typical abundances; this invasibility criterion is fundamental evidence for species coexistence regardless of the mechanism. In an attempt to evaluate the level of empirical support for coexistence mechanisms in nature, we surveyed the literature for empirical studies of coexistence at a local scale (i.e., species found living together in one place) to determine whether these studies satisfied the invasibility criterion. In our survey, only seven of 323 studies that drew conclusions about species coexistence evaluated invasibility in some way in either observational or experimental studies. In addition, only three other studies evaluated necessary but not sufficient conditions for invasibility (i.e., negative density dependence and a trade-off in performance that influences population regulation). These results indicate that, while species coexistence is a prevalent assumption for why species are able to live together in one place, critical empirical tests of this fundamental assumption of community structure are rarely performed. These tests are central to developing a more robust understanding of the relative contributions of both deterministic and stochastic processes structuring biological communities.     

Signal recognition by frogs in the presence of temporally fluctuating chorus-shaped noise

The background noise generated in large social aggregations of calling individuals is a potent source of auditory masking for animals that communicate acoustically. Despite similarities with the so-called "cocktail-party problem" in humans, few studies have explicitly investigated how non-human animals solve the perceptual task of separating biologically relevant acoustic signals from ambient background noise. Under certain conditions, humans experience a release from auditory masking when speech is presented in speech-like masking noise that fluctuates in amplitude. We tested the hypothesis that females of Cope's gray treefrog (Hyla chrysoscelis) experience masking release in artificial chorus noise that fluctuates in level at modulations rates characteristic of those present in ambient chorus noise. We estimated thresholds for recognizing conspecific advertisement calls (pulse rate=40-50 pulses/s) in the presence of unmodulated and sinusoidally amplitude modulated (SAM) chorus-shaped masking noise. We tested two rates of modulation (5 Hz and 45 Hz) because the sounds of frog choruses are modulated at low rates (e.g., less than 5-10 Hz), and because those of species with pulsatile signals are additionally modulated at higher rates typical of the pulse rate of calls (e.g., between 15-50 Hz). Recognition thresholds were similar in the unmodulated and 5-Hz SAM conditions, and 12 dB higher in the 45-Hz SAM condition. These results did not support the hypothesis that female gray treefrogs experience masking release in temporally fluctuating chorus-shaped noise. We discuss our results in terms of modulation masking, and hypothesize that natural amplitude fluctuations in ambient chorus noise may impair mating call perception.     

Modeling the dynamic habitat and breeding population of Southwestern Willow Flycatcher

To aid in the management and conservation of Southwestern Willow Flycatcher (Empidonax traillii extimus, hereafter “Flycatcher”), we developed numerous models of flycatcher breeding habitat at Roosevelt Lake, AZ. For model development and testing, we compiled 10 years of flycatcher territory data that were obtained from intensive fieldwork between 1996 and 2005. We identified riparian vegetation annually in the project area from Landsat Thematic Mapper images, and extracted floodplain features from a digital elevation model. We created a novel class of temporal (i.e., multiyear) variables by characterizing the stability and variability in breeding habitat over a 6-year time interval. We used logistic regression to determine associations between environmental variables and flycatcher territory occurrence, and to test specific hypotheses. We mapped the probability of territory occurrence with a GIS and determined model accuracies with a classification table and a 10-year population database. Environmental features that were associated with breeding flycatchers included floodplain size, proximity to water, and the density, heterogeneity, age and stability of riparian vegetation. Our best model explained 79% of the variability in the flycatcher breeding population at Roosevelt Lake. The majority of predicted flycatcher habitat formed between 1996 and 2004 on an exposed lakebed ～3 years after water levels receded during a prolonged drought. A high correlation between annual reservoir levels and predicted breeding habitat (r = ?0.82) indicates that we can create and manage habitat for conservation purposes. Our predictive models quantify and assess the relative quality of flycatcher breeding habitat remotely, and can be used to evaluate the effectiveness of habitat restoration activities. Numerous techniques we developed can be used to characterize riparian vegetation and patch dynamics directly off of satellite imagery, thereby increasing its utility for conservation purposes.     

Transcending scale dependence in identifying habitat with resource selection functions

Multi-scale resource selection modeling is used to identify factors that limit species distributions across scales of space and time. This multi-scale nature of habitat suitability complicates the translation of inferences to single, spatial depictions of habitat required for conservation of species. We estimated resource selection functions (RSFs) across three scales for a threatened ungulate, woodland caribou (Rangifer tarandus caribou), with two objectives: (1) to infer the relative effects of two forms of anthropogenic disturbance (forestry and linear features) on woodland caribou distributions at multiple scales and (2) to estimate scale-integrated resource selection functions (SRSFs) that synthesize results across scales for management-oriented habitat suitability mapping. We found a previously undocumented scale-specific switch in woodland caribou response to two forms of anthropogenic disturbance. Caribou avoided forestry cut-blocks at broad scales according to first- and second-order RSFs and avoided linear features at fine scales according to third-order RSFs, corroborating predictions developed according to predator-mediated effects of each disturbance type. Additionally, a single SRSF validated as well as each of three single-scale RSFs when estimating habitat suitability across three different spatial scales of prediction. We demonstrate that a single SRSF can be applied to predict relative habitat suitability at both local and landscape scales in support of critical habitat identification and species recovery.     

Impacts of climate variability and human colonization on the vegetation of the Galápagos Islands

A high-resolution (2-9 year sampling interval) fossil pollen record from the Galápagos Islands, which spans the last 2690 years, reveals considerable ecosystem stability. Vegetation changes associated with independently derived histories of El Ni?o Southern Oscillation variability provided evidence of shifts in the relative abundance of individual species rather than immigration or extinction. Droughts associated with the Medieval Climate Anomaly induced rapid ecological change that was followed by a reversion to the previous state. The paleoecological data suggested nonneutral responses to climatic forcing in this ecosystem prior to the period of human influence. Human impacts on the islands are evident in the record. A marked decline in long-term codominants of the pollen record, Alternanthera and Acalypha, produced a flora without modern analogue before 1930. Intensified animal husbandry after ca. 1930 may have induced the local extinction of Acalypha and Alternanthera. Reductions in populations of grazing animals in the 1970s and 1980s did not result in the return of the native flora, but in invasions by exotic species. After ca. 1970 the trajectory of habitat change accelerated, continuously moving the ecosystem away from the observed range of variability in the previous 2690 years toward a novel ecosystem. The last 40 years of the record also suggest unprecedented transport of lowland pollen to the uplands, consistent with intensified convection and warmer wet seasons.     

The interaction between reproductive cost and individual quality is mediated by oceanic conditions in a long-lived bird

Environmental variability, costs of reproduction, and heterogeneity in individual quality are three important sources of the temporal and interindividual variations in vital rates of wild populations. Based on an 18-year monitoring of an endangered, recently described, long-lived seabird, Monteiro's Storm-Petrel (Oceanodroma monteiroi), we designed multistate survival models to separate the effects of the reproductive cost (breeders vs. nonbreeders) and individual quality (successful vs. unsuccessful breeders) in relation to temporally variable demographic and oceanographic properties. The analysis revealed a gradient of individual quality from nonbreeders, to unsuccessful breeders, to successful breeders. The survival rates of unsuccessful breeders (0.90 +/- 0.023, mean +/- SE) tended to decrease in years of high average breeding success and were more sensitive to oceanographic variation than those of both (high-quality) successful breeders (0.97 +/- 0.015) and (low-quality) nonbreeders (0.83 +/- 0.028). Overall, our results indicate that reproductive costs act on individuals of intermediate quality and are mediated by environmental harshness.