Identifying the possibilities and pitfalls of conducting IUCN Red List assessments from remotely sensed habitat information based on insights from poorly known Cuban mammals

The International Union for Conservation of Nature's Red List of Threatened Species (RLS) is the key global tool for objective, repeatable assessment of species’ extinction risk status, and plays an essential role in tracking biodiversity loss and guiding conservation action. Satellite remote sensing (SRS) data sets on global ecosystem distributions and functioning show exciting potential for informing range-based RLS assessment, but their incorporation has been restricted by low temporal resolution and coverage of data sets, lack of incorporation of degradation-driven habitat loss, and noninclusion of assumptions related to identification of changing habitat distributions for taxa with varying habitat dependency and ecologies. For poorly known mangrove-associated Cuban hutias (Mesocapromys spp.), we tested the impact of possible assumptions regarding these issues on range-based RLS assessment outcomes. Specifically, we used annual (1985–2018) Landsat data and land-cover classification and habitat degradation analyses across different internal time series slices to simulate range-based RLS assessments for our case study taxa to explore potential assessment uncertainty arising from temporal SRS data set coverage, incorporating proxies of (change in) habitat quality, and assumptions on spatial scaling of habitat extent for RLS parameter generation. We found extensive variation in simulated species-specific range-based RLS assessments, and this variation was mostly associated with the time series over which parameters were estimated. However, results of some species-specific assessments differed by up to 3 categories (near threatened to critically endangered) within the same time series, due to the effects of incorporating habitat quality and the spatial scaling used in RLS parameter estimation. Our results showed that a one-size-fits-all approach to incorporating SRS information in RLS assessment is inappropriate, and we urge caution in conducting range-based assessments with SRS for species for which habitat dependence on specific ecosystem types is incompletely understood. We propose novel revisions to parameter spatial scaling guidelines to improve integration of existing time series data on ecosystem change into the RLS assessment process.     

Algorithms and biplots for double constrained correspondence analysis

Correspondence analysis with linear external constraints on both the rows and the columns has been mentioned in the ecological literature, but lacks full mathematical treatment and easily available algorithms and software. This paper fills this gap by defining the method as maximizing the fourth-corner correlation between linear combinations, by providing novel algorithms, which demonstrate relationships with related methods, and by making a detailed study of possible biplots and associated approximations. The method is illustrated using ecological data on the abundances of species in sites and where the species are characterized by traits and sites by environmental variables. The trait data and environment data form the external constraints and the question is which traits and environmental variables are associated, how these associations drive species abundances and how they can be displayed in biplots. With microbiome data becoming widely available, these and related multivariate methods deserve more study as they might be routinely used in the future.     

Morphological adaptations to chronic hypoxia in deep-sea decapod crustaceans from hydrothermal vents and cold seeps

Animals inhabiting hydrothermal vents and cold seeps face conditions that are challenging for survival. In particular, these two habitats are characterized by chronic hypoxia, sometimes reaching complete anoxia. The characteristics of the scaphognathite and gills were studied in four species of shrimp and three species of crabs from hydrothermal vents and cold seeps, in order to highlight potential adaptations that could enhance oxygen acquisition in comparison with shallow-water relatives. All the vent and seep species studied here exhibit significantly larger scaphognathites, likely allowing more water to flow over their gills per stroke of this appendage. This is probably more energetically efficient that prolonged hyperventilation. In contrast to annelids, vent and seep decapods usually do not possess enlarged gills, a phenomenon likely due to the physical limitations imposed by the size of the gill chamber. In the vent shrimp Rimicaris exoculata and the vent crab Bythograea thermydron, however, there is a significantly higher specific gill surface area linked to a higher number of lamellae per gram of gill. Again in contrast to annelids, the diffusion distance through the gills is not strikingly different between the vent shrimp Alvinocaris komaii and the shallow-water species Palaemon spp. This may indicate that the epithelium and cuticle of the decapod gills are already optimized for oxygen uptake and that reducing the thickness of these compartments is not physically possible without affecting the physical integrity of the gills.     

Large Eddy Simulation of turbulence generated by a weak breaking tidal bore

A tidal bore is a natural and fragile phenomenon, which is of great importance for the ecology of an estuary. The bore development is closely linked with the tidal range and the river mouth shape, and its existence is sensitive to any small change in boundary conditions. Despite their ecological and cultural value, little is known on the flow field, turbulent mixing and sediment motion beneath tidal bores. Indeed, some striking features can be highlighted in two-dimensional simulations, such as large velocity fluctuations and flow recirculation structures. Using Large Eddy Simulation method, the numerical results emphasised the complicated turbulent structures and their unsteadiness under a tidal bore.     

Examination of the influence of dissolved halite (NaCl) on the leaching of lead (Pb) from cement-based solidified wastes

The leaching of lead from cement-based solidified waste forms mixed at different water/cement ratios was studied by conducting equilibrium and semi-dynamic leaching tests using deionized water and sodium chloride solutions. The results suggest that leaching of the primary constituents of the cement (calcium, silicon and sulfate) is controlled by solubility equilibria, with increased leaching into chloride solutions due to ionic strength effects. The original porosity of the waste forms increased with water/cement ratio and chloride solutions further increased it as a result of decalcification. Lead leaching was generally low, and appears to be a transport-controlled process, such that leaching correlates positively with porosity.     

Water quality in rice-growing watersheds in a Mediterranean climate

Rice (Oryza sativa L.) agriculture is estimated to cover 161 million ha of land on Earth, with 10% grown in temperate regions. Currently there are strong concerns about surface water nutrient pollution, and the purpose of this study was to determine the impacts of temperate rice cultivation on nutrient dynamics at the small watershed scale. Over the course of the 2008 growing season (May through September), bi-weekly grab samples were collected from outlets of 11 agricultural subwatersheds in California. Samples were analyzed for NO₃-N, NH₄-N, PO₄-P, K, and dissolved organic nitrogen (DON) concentrations, and the average values across all subwatersheds and sampling dates were 0.22, 0.031, 0.047, 1.36, and 0.32 mg L⁻¹, respectively. Linear mixed effects analysis was used to evaluate the magnitude of relationships between nutrient concentration and flux and subwatershed characteristics (i.e. percent soil clay and organic matter, percent rice area, irrigation water reuse, subwatershed discharge, irrigated area, and time, measured as the day in the growing season). For all nutrients, flux decreased over time and increased with discharge. Concentrations of K and DON were highest at the start and end of the growing season. Concentrations of NH₄-N were near non-detect levels, with the exception of a peak in mid-July, which corresponds to when many growers top-dress rice fields with N fertilizer. Nitrate-N concentration and flux decreased with percent rice area, whereas PO₄-P concentrations increased with percent rice area, indicating that rice area should be considered in future watershed-scale studies of nutrient discharge. In all subwatersheds, the discharge loads of K were smaller than surface water input loads, while NO₃-N, NH₄-N, PO₄-P, and DON discharge loads exceeded input loads when total growing season discharge was greater than 3500-6600 m³ ha⁻¹. This implies that the management of subwatershed discharge can be used to control nutrient export from rice-growing areas.     

Assessment of indoor air concentrations of VOCs and their associated health risks in the library of Jawaharlal Nehru University,New Delhi

The present work investigated the levels of total volatile organic compounds (TVOC) and benzene, toluene, ethylbenzene, m/p-xylene, and o-xylene (BTEX) in different microenvironments in the library of Jawaharlal Nehru University in summer and winter during 2011–2012. Carcinogenic and non-carcinogenic health risks due to organic compounds were also evaluated using US Environmental Protection Agency (USEPA) conventional approaches. Real-time monitoring was done for TVOC using a data-logging photo-ionization detector. For BTEX measurements, the National Institute for Occupational Safety and Health (NIOSH) standard method which consists of active sampling of air through activated charcoal, followed by analysis with gas chromatography, was performed. Simultaneously, outdoor measurements for TVOC and BTEX were carried out. Indoor concentrations of TVOC and BTEX (except benzene) were higher as compared to the outdoor for both seasons. Toluene and m/p-xylene were the most abundant organic contaminant observed in this study. Indoor to outdoor (I/O) ratios of BTEX compounds were generally greater than unity and ranged from 0.2 to 8.7 and 0.2 to 4.3 in winter and summer, respectively. Statistical analysis and I/O ratios showed that the dominant pollution sources mainly came from indoors. The observed mean concentrations of TVOC lie within the second group of the Molhave criteria of indoor air quality, indicating a multifactorial exposure range. The estimated lifetime cancer risk (LCR) due to benzene in this study exceeded the value of 1?×?10^?6 recommended by USEPA, and the hazard quotient (HQ) of non-cancer risk came under an acceptable range.     

Sub-cellular partitioning of Cd, Cu and Zn in tissues of indigenous unionid bivalves living along a metal exposure gradient and links to metal-induced effects

We studied organ and sub-cellular distributions of several trace metals in a freshwater bivalve that has been proposed for use as a metal biomonitor. Specimens of Pyganodon grandis were collected from nine lakes located along a Cd, Cu and Zn concentration gradient (Rouyn-Noranda area, Quebec). Gills and digestive gland were isolated, homogenized and six sub-cellular fractions were separated by differential centrifugation and analysed for their Cd, Cu and Zn content. Metallothionein was quantified independently. Gill tissues contained abundant calcium concretions that accounted for over 60% of the total gill burden of each metal. Cadmium and Zn concentrations in this granule fraction reflected ambient metal concentrations. Metal concentrations in the digestive gland also responded to the metal contamination gradient, but to a lesser extent than the gills, reflecting the lower abundance of granules in the digestive gland. Metals (Cd, Cu) in this organ were present largely in the "heat-stable proteins" fraction, and metal concentrations in this fraction were strongly correlated with those of both metallothionein and, to a lesser extent, the "lysosomes+microsomes" and "mitochondria" fractions. In both organs, Cd concentrations in the "heat-denaturable protein" fraction remained low and constant, suggesting reasonably effective metal detoxification. Some evidence for oxidative stress was noted in the gills but not in the digestive gland. Overall, we conclude that in nature metals in P. grandis are bound differently in the gills and in the digestive gland and that metal detoxification in the former organ may be less effective than in the latter.     

Models for the field-based toxicity of copper and zinc salts to wheat in 11 Australian soils and comparison to laboratory-based models

Laboratory-based relationships that model the phytotoxicity of metals using soil properties have been developed. This paper presents the first field-based phytotoxicity relationships. Wheat (Triticum aestivum L.) was grown at 11 Australian field sites at which soil was spiked with copper (Cu) and zinc (Zn) salts. Toxicity was measured as inhibition of plant growth at 8 weeks and grain yield at harvest. The added Cu and Zn EC10 values for both endpoints ranged from approximately 3 to 4760 mg/kg. There were no relationships between field-based 8-week biomass and grain yield toxicity values for either metal. Cu toxicity was best modelled using pH and organic carbon content while Zn toxicity was best modelled using pH and the cation exchange capacity. The best relationships estimated toxicity within a factor of two of measured values. Laboratory-based phytotoxicity relationships could not accurately predict field-based phytotoxicity responses.     

Enzyme activity and microorganisms diversity in soil contaminated with the Boreal 58 WG herbicide

Next-generation herbicides are relatively safe when used properly, but the recommended rates are relatively low, which can lead to overdosing. This study evaluated the responses of soil-dwelling microorganisms and soil enzymes to contamination with the Boreal 58 WG herbicide. The analyzed product contains active ingredients flufenacet and isoxaflutole. All tests were performed under laboratory conditions. The analyzed material was sandy clay. Boreal 58 WG was introduced to soil in four doses. Soil without the addition of the herbicide served as the control. The soil was mixed with the tested herbicide, and its moisture content was maintained at 50% of capillary water capacity. Biochemical and microbiological analyses were performed on experimental days 0, 20, 40, 80 and 160. Accidental contamination of soil with the Boreal 58 WG herbicide led to a relatively minor imbalance in the soil microbiological and biochemical profile. The herbicide dose influenced dehydrogenase activity in only 0.84%, urease activity in 2.04%, β-glucosidase activity in 8.26%, catalase activity in 12.40%, arylsulfatase activity in 12.54%, acid phosphatase activity in 42.11%, numbers of organotrophic bacteria in 18.29%, actinomyces counts in 1.31% and fungi counts in 6.86%.