Isolation of antifungal bacteria from Japanese fermented soybeans, natto

An inhibitory effect of a traditional Japanese fermented food, natto, was found against plant pathogens such as Rhizoctonia solani and Fusarium oxysporum, and the bacteria which showed inhibition were isolated from the natto. Among isolated bacteria, BC-1 and GAc exhibited a strong antagonistic effect in vitro against plant pathogens on an agar medium. The supernatant of bacterial culture also showed strong activity against R. solani, which meant the antimicrobial substances were produced and secreted into the medium. Both of the bacteria were estimated as Bacillus amyloliquefaciens from a partial sequence of the 16s rRNA gene. High performance liquid chromatography analysis clearly showed the production of the lipopeptide antibiotic iturin A by BC-1 and GAc.     

Evaluating the seasonal changes of water quality of the Değirmendere and Galyan Rivers (Trabzon, Turkey)

The De?irmendere and Galyan (De?irmendere tributary) Rivers that discharge their water into the Black Sea are important watersheds in the northeastern part of Turkey. Water quality parameters were sampled from 1997 through 2001 for each year at five sites (three for Galyan, two for Degirmendere) along 29 and 42 km gradients, respectively covering all seasons. Surface water was collected from the sites and analyzed for temperature, total alkaline (MAAL), total dissolved solids (TDS), dissolved oxygen (DO), pH, conductivity (EC), nitrate (NO3), nitrite (NO2), total hardness (TH), phenolphthalein alkalinities (PAL) and organic matter (PV). Seasonal changes of water quality were analyzed statistically for both Rivers and evaluated according to the TS 266, EU and WHO standards. The analysis of variance results showed that Ca, Mg, MAL, NO3, pH, TDS and TH parameters of the De?irmendere River and Ca, DO, EC, MAL, NO3, pH and TH parameters of the Galyan River showed seasonal differences (p<0.05). The maximum values of the water pollution parameters for the two Rivers were below the threshold values throughout the study period. When both Rivers were compared, the mean values of the pollution parameters of the Degirmendere River were higher than those of the Galyan River and very close the limits. The results indicate that both Rivers can be used for the production of potable water during all seasons but only with an advanced treatment in the De?irmendere and a moderate treatment in the Galyan River, and for indirect and non-contact recreational activities.     

Assessment of big floods in the Eastern Black Sea Basin of Turkey

In this study, general knowledge and some details of the floods in Eastern Black Sea Basin of Turkey are presented. Brief hydro-meteorological analysis of selected nine floods and detailed analysis of the greatest flood are given. In the studied area, 51 big floods have taken place between 1955–2005 years, causing 258 deaths and nearly US $500,000,000 of damage. Most of the floods have occurred in June, July and August. It is concluded that especially for the rainstorms that have caused significantly damages, the return periods of the rainfall heights and resultant flood discharges have gone up to 250 and 500 years, respectively. A general agreement is observed between the return periods of rains and resultant floods. It is concluded that there has been no significant climate change to cause increases in flood harms. The most important human factors to increase the damage are determined as wrong and illegal land use, deforestation and wrong urbanization and settlement, psychological and technical factors. Some structural and non-structural measures to mitigate flood damages are also included in the paper. Structural measures include dykes and flood levees. Main non-structural measures include flood warning system, modification of land use, watershed management and improvement, flood insurance, organization of flood management studies, coordination between related institutions and education of the people and informing of the stakeholders.     

Influence of Carbon Sources on The Production and Characterization of The Exopolysaccharide (EPS) by Bacillus sphaericus 7055 Strain

In this study, EPS produced by five Bacillus spp. strains was determined. The only one strain (B. sphaericus 7055) was selected due to its high EPS production and it was investigated by growing this strain in LB broth medium containing various carbon sources. The highest EPS production of this strain was found in medium containing fructose. However, the effect of different concentrations of fructose and molasses on EPS production by the strain was studied. The maximum EPS yield of the strain 7055 was recorded with 2.5% (w/v) fructose, also the highest EPS production was found in 2.5% (w/v) molasses. The strain 7055 was found to contain (98.6%) galactose and (1.4%) glucuronic acid in control medium whereas the composition of the strain 7055 (2.5% (w/v) fructose) was found to be (99.9%) neutral sugar and (0.1%) Glucuronic acid while the strain 7055 (2.5% (w/v) molasses) was found to contain (65.9%), neutral sugars and (34.1%) glucuronic acid.     

Dimethoate-induced oxidative stress and DNA damage in Oncorhynchus mykiss

The present study was conducted in order to investigate pro-oxidant activity of dimethoate in liver and brain tissues following sublethal pesticide exposure for 5, 15 and 30 d by using SOD, GPx, CAT enzyme activities and lipid peroxidation as biomarkers as well as DNA damaging potential via detecting% Tail DNA, Tail moment and Olive tail moment as endpoints in erythrocytes of Oncorhynchus mykiss in an in vitro experiment. Antioxidant enzyme activities were found to elicit two staged response which was an initial induction followed by a sharp inhibition in liver tissue while a sustained increase in GPx activity and slight stimulation in SOD activity were detected in brain tissue. Lipid peroxidation showed an ascending pattern throughout the exposure period in both tissues and a decreasing trend was determined in tissue protein levels which was proved to be positively correlated with duration. Similar findings were obtained from outcomes preferred to quantify DNA damage and TM was decided to reflect the extent of damage more sensitively because of determined positive correlation with concentrations applied. Considering these results, it can be concluded that oxidative stress condition evoked by dimethoate could not be responded effectively and genotoxic nature of pesticide was proven by determined clastogenic effect possibly via being an alkylation agent or stimulating the production of reactive species.     

Determination of antimicrobial and heavy metal resistance profiles of some bacteria isolated from aquatic amphibian and reptile species

The aim of the present study was to determine the level of antibiotic resistance patterns and distribution of heavy metal resistance of bacterial isolates from aquatic animals (Lissotriton vulgaris, Pelophylax ridibundus, Emys orbicularis, Mauremys rivulata, and Natrix natrix) in Turkey (Kavak Delta). A total of 153 bacteria have been successfully isolated from cloaca and oral samples of the aquatic amphibians and reptilians which were found, namely, Aeromonas sp. (n?=?29), Plesiomonas sp. (n?=?7), Vibrio sp. (n?=?12), Citrobacter sp. (n?=?12), Enterobacter sp. (n?=?11), Escherichia sp. (n?=?22), Klebsiella sp. (n?=?22), Edwardsiella sp. (n?=?6), Hafnia sp. (n?=?1), Proteus sp. (n?=?19), Providencia sp. (n?=?8), and Pseudomonas sp. (n?=?4). In terms of antibiotic and heavy metal susceptibility testing, each isolate was tested against 12 antibiotics and 4 metals. There was a high incidence of resistance to cefoxitin (46.40 %), ampicillin (44.44 %), erythromycin (35.29 %), and a low incidence of resistance to gentamicin (6.53 %), kanamycin (8.49 %), chloramphenicol (9.15 %), and cefotaxime (10.45 %). The multiple antibiotic resistance index of each bacterial species indicated that bacteria from raised amphibians and reptiles have been exposed to tested antibiotics, with results ranging from 0 to 0.58. Most isolates showed tolerance to different concentrations of heavy metals, and minimal inhibition concentrations ranged from100 to >3,200 μg/mL. According to these results, a significant occurrence of bacteria in the internal organs of reptiles and amphibians, with a high incidence of resistance against antibiotics and heavy metals, may risk aquatic animals and the public health. These data appoint the importance of epidemiological surveillance and microbiological monitoring and reinforce the need to implement environment protection programs for amphibian and reptile species.     

Association between air quality and quality of life

Air quality—or its converse, air pollution—is a significant risk factor for human health. Recent studies have reported association between air pollution and human health. There are numerous diseases that may be caused by air pollution such as respiratory infection, lung cancer, cardiovascular disease, chronic obstructive pulmonary disease, and asthma. In this study, the relationship between air quality and quality of life was examined by using canonical correlation analysis. Data of this study was collected from 27 countries. WHO statistics were used as the main source of quality of life data set (Y variables set). European Environment Agency statistics and (for outdoor air-PM10) WHO statistics were used as the main source of air quality data set (X variables set). It is found that there are significant positive correlation between air quality and quality of life.     

Toxic effects of deltamethrin and λ-cyhalothrin on Xenopus laevis tadpoles

This study evaluates the toxic effects of deltamethrin and λ-cyhalothrin on Xenopus laevis tadpoles after 168 h of exposure. The LC₅₀ of deltamethrin and λ-cyhalothrin at 168 h was calculated as the μg of active ingredient per liter (μg AI/L). According to these values, the LC₅₀ was 6.26 and 3.94 μg AI/L for deltamethrin and λ-cyhalothrin, respectively. Several enzymes were studied for early signs of intoxication following exposure to the pesticides for 24 h. Glutathione-S-transferase,carboxylesterase, and lactate dehydrogenase were inhibited by λ-cyhalothrin, and both pesticides inhibited acid phosphatase and aspartate aminotransferase. In contrast, acetylcholinesterase was activated by deltamethrin. The results suggest that X. laevis is sensitive to the pyrethroids that were tested, and the enzyme responses suggest that they are potential biomarkers for evaluating the toxic effect of pyrethroids on amphibians in environmental conditions.