Biodegradation of hydrocarbons vapors: Comparison of laboratory studies and field investigations in the vadose zone at the emplaced fuel source experiment, Airbase Vaerløse, Denmark

The natural attenuation of volatile organic compounds (VOCs) in the unsaturated zone can only be predicted when information about microbial biodegradation rates and kinetics are known. This study aimed at determining first-order rate coefficients for the aerobic biodegradation of 13 volatile petroleum hydrocarbons which were artificially emplaced as a liquid mixture during a field experiment in an unsaturated sandy soil. Apparent first-order biodegradation rate coefficients were estimated by comparing the spatial evolution of the resulting vapor plumes to an analytical reactive transport model. Two independent reactive numerical model approaches have been used to simulate the diffusive migration of VOC vapors and to estimate degradation rate coefficients. Supplementary laboratory column and microcosm experiments were performed with the sandy soil at room temperature under aerobic conditions. First-order kinetics adequately matched the lab column profiles for most of the compounds. Consistent compound-specific apparent first-order rate coefficients were obtained by the three models and the lab column experiment, except for benzene. Laboratory microcosm experiments lacked of sensitivity for slowly degrading compounds and underestimated degradation rates by up to a factor of 5. Addition of NH3 vapor was shown to increase the degradation rates for some VOCs in the laboratory microcosms. All field models suggested a significantly higher degradation rate for benzene than the rates measured in the lab, suggesting that the field microbial community was superior in developing benzene degrading activity.     

Prevalence and Molecular Characterization of the Hepatitis E Virus in Retail Pork Products Marketed in Canada

Infection with the hepatitis E virus (HEV) is very common worldwide. HEV causes acute viral hepatitis with approximately 20 million cases per year. While HEV genotypes 1 and 2 cause large waterborne and foodborne outbreaks with a significant mortality in developing countries, genotypes 3 and 4 are more prevalent in developed countries with transmission being mostly zoonotic. In North America and Europe, HEV has been increasingly detected in swine, and exposure to pigs and pork products is considered to be the primary source of infection. Therefore we set out to investigate the prevalence of HEV in retail pork products available in Canada, by screening meal-size portions of pork pâtés, raw pork sausages, and raw pork livers. The presence of the HEV genomes was determined by RT-PCR and viral RNA was quantified by digital droplet PCR. Overall, HEV was detected in 47% of the sampled pork pâtés and 10.5% of the sampled raw pork livers, but not in the sampled pork sausages, and sequencing confirmed that all HEV strains belonged to genotype 3. Further phylogenetic analysis revealed that except for one isolate that clusters with subtype 3d, all isolates belong to subtype 3a. Amino acid variations between the isolates were also observed in the sequenced capsid region. In conclusion, the prevalence of HEV in pâtés and raw pork livers observed in this study is in agreement with the current HEV distribution in pork products reported in other developed countries.     

<Emphasis Type="Italic">Cytherella</Emphasis> as a tool to reconstruct deep-sea paleo-oxygen levels: the respiratory physiology of the platycopid ostracod <Emphasis Type="Italic">Cytherella</Emphasis> cf. <Emphasis Type="Italic">abyssorum</Emphasis>

The reconstruction of past climates is a major challenge. One approach is the use of paleoceanography, which looks for clues to the past activity of deep-sea currents by associating them with the melting of the poles. In different sampling zones, fossil biomarkers are used to reconstruct the oxygenation levels of the sea bottom. Among the ostracods (crustaceans), the family Cytherellidae is considered to be resistant to significant decreases in oxygen and their fossil valves are used as biomarkers for oxygenation levels in the past. We studied the basic principles behind Cytherella cf. abyssorum’s ability to adapt to variations in water oxygenation levels in an attempt to determine what could differentiate it from other ostracods. Cytherella cf. abyssorum Sars 1866 has an activity level and ventilatory frequency only half that of ostracods studied previously. When subjected to a decrease in oxygenation, it demonstrates the beginnings of ventilatory adaptation which is unknown in the other studied ostracods. Some morpho-functional aspects are also remarkable, such as the presence of thick valves, which can close hermetically by means of powerful adductor muscles. Compared with already studied ostracods, Cytherella cf. abyssorum has, therefore, characteristics which suggest an ability to present increased resistance in hypoxia. We discuss these results in the paleoceanographical context by describing a scenario suggesting why an increased proportion of the ostracod population could indicate the existence of ocean bottoms with low oxygenation.     

Spatial and space-time scan statistics to detect low rate clusters of sex ratio

Whether general environmental exposures to endocrine disrupting chemicals (including pesticides and dioxin) might induce decreased sex ratios (male/female ratio at birth) is discussed. To address this issue, the authors looked for a space-time clustering test which could detect local areas of significantly low risk, assuming a Bernoulli distribution. As a matter of fact, if the endocrine disruptor hypothesis holds true, and if the sex ratio is a sentinel health event indicative of new reproductive hazards ascribed to environmental factors, then in a given region, either a cluster of low male/female ratio among newborn babies would be expected in the vicinity of polluting municipal solid waste incinerators (MSWIs) (supporting the dioxin hypothesis), or local clusters would be expected in some rural areas where large amounts of pesticides are sprayed. Among cluster detection tests, the spatial scan statistic has been widely used in various applications to scan for areas with high rates, and rarely (if ever) with low rates. Therefore, the goal of this paper was to check the properties of the scan statistics under a given scenario (Bernoulli distribution, search for clusters with low rates) and to assess its added value in addressing the sex ratio issue. This study took place in the Franche-Comté region (France), mainly rural, comprising three main MSWIs, among which only one had high dioxin emissions level in the past. The study population consisted of 192,490 boys and 182,588 girls born during the 1975–1999 period. On the whole, the authors conclude that: (i) spatial and space-time scan statistics provide attractive features to address the sex ratio issue; (ii) sex ratio is not markedly affected across space and does not provide a reliable screening measure for detecting reproductive hazards ascribed to environmental factors.     

Vermicompost addition influences symbiotic fungi communities associated with leek cultivated in metal-rich soils

In the context of urban agriculture, where soils are frequently contaminated with metal(loid)s (TM), we studied the influence of vermicompost amendments on symbiotic fungal communities associated with plants grown in two metal-rich soils. Leek (Allium porrum L.) plants were grown with or without vermicompost in two metal-rich soils characterized by either geogenic or anthropogenic TM sources, to assess the influence of pollutant origin on soil-plant transfer. Fungal communities associated with the leek roots were identified by high throughput Illumina MiSeq and TM contents were measured using mass spectrometry. Vermicompost addition led to a dramatic change in the fungal community with a loss of diversity in the two tested soils. This effect could partially explain the changes in metal transfer at the soil-AMF-plant interface. Our results suggest being careful while using composts when growing edibles in contaminated soils. More generally, this study highlights the need for further research in the field of fungal communities to refine practical recommendations to gardeners.

Graphical abstract

     

Differences in the bioaccumulation of arsenic by oysters from Southeast coastal US and Chesapeake Bay: environmental versus genetic control

The potential sources of relatively great concentrations of arsenic (As) in oysters from the Southeastern United States coast was examined in a study conducted from August 1998 through October 1999. A transplant experiment was conducted to determine whether genetic or environmental differences accounted for the observed difference between Southeastern oysters, and oysters elsewhere on the east coast. Oysters originating in South Carolina (a region where As in oysters is usually greater) and Maryland (a region where arsenic is oysters is less) were reciprocally transplanted to determine whether site of growth or site of origin would determine the accumulation of As. To examine the potential role of various potential sources of As exposure on the concentrations of As in oysters, samples of native oysters, water, pore water and suspended particles were collected and analyzed for As monthly, while the sediments were examined four times during the year. Concentrations of As in transplanted oysters matched the concentrations of As in oysters native to the area in which they were grown, rather than that of oysters from their site of origin. Oysters from South Carolina had average concentrations of As approximately 3.2 times that of oysters from Maryland. This enrichment was similar to enrichments of water (3.4 times), sediment (2.5 times), suspended particles (1.7 times), and pore water (3.1 times) from South Carolina compared to Maryland. This supports the hypothesis that the cause of the apparent As enrichments in the Southeastern oysters is environmental, but leaves the question of the primary source for arsenic incorporation by oysters open.     

Earthworms highly increase ciprofloxacin mineralization in soils

This report shows that earthworms increase up to eight times the mineralization of the antibiotic ciprofloxacin in soils. Antibiotics are extensively used and disseminated in environmental compartments. Antibiotics may enter food chains and thus induce resistance in environmental and human commensal bacteria. The antibiotic ciprofloxacin is suspected to induce significant adverse effects on soil microbial processes, with possible consequences on soil functions. Nevertheless, little is known concerning the fate of ciprofloxacin in soils. Here, we studied the mineralization and distribution of the [2-¹⁴C]-ciprofloxacin in soil–plant–water systems where ciprofloxacin was applied by amendment of spiked pig slurry. Results show that a very weak microbial mineralization of the antibiotic, lower than 0.01 %, occurred after 84 days of incubation. By contrast, the addition of earthworms increased from 5 to 8 times ciprofloxacin mineralization during the following 84 days incubation. In addition, earthworm activity induced the transfer of 40 % of radioactive compounds from the upper to the lower layer of soil, modifying the distribution of the antibiotic within the soil profile. We conclude that earthworms can be used efficiently to mineralize ciprofloxacin and modify its distribution in soils. As a consequence, earthworms change the exposure of soil organisms to ciprofloxacin, and, in turn, the eco-toxicological impact of the antibiotic.     

Evaluation of the Effect of Chemical or Enzymatic Synthesis Methods on Biodegradability of Polyesters

This work compares the biodegradability of polyesters produced by an esterification reaction between glycerol and oleic di-acid (D 18:1) issued from green chemical pathways, via either classical thermo-chemical methods, or an enzymatic method using the immobilized lipase of Candida antartica B (Novozym 435). An elastomeric polymer synthesized by enzymatic catalysis is more biodegradable than an elastomeric thermo-chemical polyester synthesized by a standard chemical procedure. This difference lies in percentage of the dendritic motifs, in values of the degree of substitution, and certainly in cross-links inducing an hyper-branched structure less accessible to the lipolytic enzymes in a waste treatment plant. However, when the elastomeric polymer synthesized by enzymatic catalysis is processed at high temperature as required for certain industrial applications, it presents an identical rate of biodegradation than the chemical polyester. The advantages of the thermo-chemical methods are greater speed and lower cost. Enzymatic synthesis appears be suited to producing polyesters, devoid of metallic catalysts, which must be used without processing at high temperature to keep a high biodegradability.