Kinetic studies of imazapyr photolysis and characterization of the main photoproducts

The fate of imazapyr (2-(4-isopropyl-4-methyl-5-oxo-2-imidazolin-2-yl)nicotinic acid), a broad-spectrum herbicide in the imidazolinone family, has been studied upon UV irradiation. Most of the photoproducts occurring during the photodegradation have been characterized by means of liquid chromatography and mass spectrometry coupled techniques (LC-MS). The use of high resolution mass spectrometry has allowed to maximize the chemical information obtained from a single LC-MS analysis. The degradation of a 10?ppm imazapyr solution leads to pyridine derivatives which remain in solution during 50–100?h while the imazapyr is completely degraded after 6?h.     

Intraguild predation and mesopredator release effect on long-lived prey

Complete extirpation of a species can generate cascading effects throughout an ecosystem, yet are precisely the goal of island eradications of pest species. “Mesopredator release effect”, an asymmetrical special case of intraguild predation, has been hypothesised as a possible indirect effect from eradications, where superpredator removal can generate a mesopredator increase which may increase the impact on their shared prey. Theoretically this suggests that for intraguild predators, the superpredator may protect the shared prey from mesopredation, and removal of superpredators alone is not recommended. We create a model of long-lived age-structured shared prey and explore the non-equilibrium dynamics of this system. The superpredator can impact all prey life-stages (adult survival and reproductive success) whereas the smaller mesopredator can only impact early life-stages (reproductive success). This model is independently tested with data from a closed oceanic island system where eradication of introduced intraguild predators is possible for conservation of threatened birds. Mesopredator release only occurs in strongly top-down moderated (resource-abundant) systems. Even when mesopredator release can occur, the negative impact of more mesopredators is outweighed by the benefit of superpredator removal, allowing recovery of the prey population. Results are robust to 10% variation in model parameters. The consideration of age-structured prey contradicts previous theoretical results for mesopredator release effect and intraguild predation. Superpredator eradication is vital for population recovery of long-lived insular species. Nonetheless island conservation must retain a whole-ecosystem perspective given the complex trophic relationships among multiple species on islands.     

Compositional analysis of topsoil metals and its associations with cancer mortality using spatial misaligned data

The presence of toxic metals in soil per se, and in soil impacted by mining, industry, agriculture and urbanisation in particular, is a major concern for both human health and ecotoxicology. The dual aim of this study was: to ascertain whether topsoil composition could influence the spatial distribution of mortality due to different types of cancer and to identify possible errors committed by epidemiological studies which analyse soil composition data as a closed number system. We conducted an ecological cancer mortality study, covering 861,440 cancer deaths (27 cancer sites) in 7917 Spanish mainland towns, from 1999 to 2008. Topsoil levels of Al, As, Cd, Cr, Cu, Fe, Mn, Ni, Pb and Zn were determined by ICP-MS at 13,317 sampling points. We transformed the topsoil data in two ways, i.e. log transformation and centred logratio transformation. Principal factor analysis was performed to obtain independent latent factors for the transformed variables. To estimate the effect on mortality of topsoil factor loadings, we fitted Besag, York and Mollié models embedded in geostatistical-spatial models. This model included soil sample locations and town centroids (non-aligned data), fitted using the integrated nested Laplace approximation (INLA) as a tool for Bayesian inference and stochastic partial differential equations (SPDE). All results were adjusted for socio-demographic variables. The results indicated that soil composition could have an influence on the spatial distribution and mortality patterns of cancer. The analysis adjusted for socio-demographic variables showed excess male mortality due to digestive system tumours in areas with soils containing higher Cd, Pb, Zn, Mn and Cu concentrations, bladder cancer in areas with soils containing higher Cd concentrations, and brain cancer in areas with soils containing As. In both sexes, cancer of oesophagus was associated with soils containing a higher lead content, while lung cancer was associated with soils containing a higher copper content. Stress should be laid on the importance of taking into account the compositional nature of the data in this type of analysis.     

3D geometric structures and biological activity: Application to microbial soil organic matter decomposition in pore space

During the past 10 years, soil scientists have started to use 3D Computed Tomography in order to gain a clearer understanding of the geometry of soil structure and its relationships with soil properties. We propose a geometric model for the 3D representation of pore space and a practical method for its computation. Our basic idea consists in representing pore space using a minimal set of maximal balls (Delaunay spheres) recovering the shape skeleton. In this representation, each ball could be considered as a maximal local cavity corresponding to the “intuitive” notion of a pore as described in the literature. The space segmentation induced by the network of balls (pores) was then used to spatialize biological dynamics. Organic matter and microbial decomposers were distributed within the balls (pores). A valuated graph representing the pore network, organic matter and distribution of micro-organisms was then defined. Microbial soil organic matter decomposition was simulated by updating this valuated graph. The method was implemented and tested using real CT images. The model produced realistic simulated results when compared with data in the literature in terms of the water retention curve and carbon mineralization. A decrease in water pressure decreased carbon mineralization, which is also in accordance with findings in the literature. From our results we showed that the influence of water pressure on decomposition is a function of organic matter distribution in the pore space. As far as we know, this is the approach to have linked pore space geometry and biological dynamics in a formal way. Our next goal will be to compare the model with experimental data of decomposition using different soil structures, and to define geometric typologies of pore space shape that can be attached to specific biological and dynamic properties.     

Data assimilation for short range atmospheric dispersion of radionuclides: a case study of second-order sensitivity

This article presents the application of variational data assimilation to a simple Gaussian plume model for radionuclides. Adjoint modeling is applied to the model in order to minimize discrepancies between contamination observations and model outputs. The interest of such an approach is to get a better estimation of some parameters such as emissions or dispersion parameters. A second-order analysis is also performed to assess the sensitivity of the optimized parameters to some poorly known parameters. Sensitivity with respect to network design is also done.     

A goal oriented indicator framework to support integrated assessment of new policies for agri-environmental systems

The goal oriented framework (GOF) for indicators has been developed as part of a comprehensive research project developing computerised tools for integrated assessment of the effects of new policies or technologies on agricultural systems (SEAMLESS-IF). The ambition has therefore been to create an indicator framework where the environmental, economic and social dimensions of sustainable development can be related to each other in a consistent way. Integrated assessment tools rely on such frameworks to capture and visualise trade-offs (antagonisms or synergies) among indicators between and within the three dimensions of sustainable development. The specific aims of this paper are to (i) present the GOF (ii) present how the GOF can be used to select indicators within the integrated assessment framework SEAMLESS-IF and (iii) discuss the advantages and limitations with the proposed approach. We show that the GOF has several advantages. Its major rewards are its relative simplicity and the possibility to link indicators to policy goals of each dimension of sustainability and thereby facilitate the comparison of the impacts of the new policy on the different dimensions. Another important feature of the GOF is its multi-scale perspective, which will enable the comparison of effects of a new policy between scales. Yet, as typical for all indicator frameworks, the GOF has also biases either instigated by the issues the included models cover or by the stakeholders’ selection of indicators. However, due to the way the GOF and its indicators are technically implemented in SEAMLESS-IF, it can easily be extended and include new indicators to increase and update its policy relevance.     

Potassium, phosphorus, or nitrogen limit root allocation, tree growth, or litter production in a lowland tropical forest

We maintained a factorial nitrogen (N), phosphorus (P), and potassium (K) addition experiment for 11 years in a humid lowland forest growing on a relatively fertile soil in Panama to evaluate potential nutrient limitation of tree growth rates, fine-litter production, and fine-root biomass. We replicated the eight factorial treatments four times using 32 plots of 40 x 40 m each. The addition of K was associated with significant decreases in stand-level fine-root biomass and, in a companion study of seedlings, decreases in allocation to roots and increases in height growth rates. The addition of K and N together was associated with significant increases in growth rates of saplings and poles (1-10 cm in diameter at breast height) and a further marginally significant decrease in stand-level fine-root biomass. The addition of P was associated with a marginally significant (P = 0.058) increase in fine-litter production that was consistent across all litter fractions. Our experiment provides evidence that N, P, and K all limit forest plants growing on a relatively fertile soil in the lowland tropics, with the strongest evidence for limitation by K among seedlings, saplings, and poles.     

Diversity and distribution of cold-seep fauna associated with different geological and environmental settings at mud volcanoes and pockmarks of the Nile Deep-Sea Fan

The Nile Deep-Sea Fan (NDSF) is located on the passive continental margin off Egypt and is characterized by the occurrence of active fluid seepage such as brine lakes, pockmarks and mud volcanoes. This study characterizes the structure of faunal assemblages of such active seepage systems of the NDSF. Benthic communities associated with reduced, sulphidic microhabitats such as sediments and carbonate crusts were sampled by remotely operated vehicles during two cruises in 2006 (BIONIL) and 2007 (MEDECO). Environmental conditions and biological factors including family-level faunal composition, density and diversity were measured at local and regional scales. Significant differences were detected at different spatial scales: (1) the fauna of reduced habitats differed substantially in activity, diversity and biomass from the non-seep environment at similar water depth, (2) cold seep microhabitats showed differences in community structure and composition related to substratum type as well as to the intensity and location of fluid emissions.