Sequence-based source tracking of Escherichia coli based on genetic diversity of beta-glucuronidase

High levels of fecal bacteria are a concern for recreational waters; however, the source of contamination is often unknown. This study investigated whether direct sequencing of a bacterial gene could be utilized for detecting genetic differences between bacterial strains for microbial source tracking. A 525-nucleotide segment of the gene for beta-glucuronidase (uidA) was sequenced in 941 Escherichia coli isolates from the Clinton River-Lake St. Clair watershed, 182 E. coli isolates from human and animal feces, and 34 E. coli isolates from a combined sewer. Environmental isolates exhibited 114 alleles in 11 groups on a genetic tree. Frequency of strains from different genetic groups differed significantly (p < 0.03) between upstream reaches (Bear Creek-Red Run), downstream reaches, and Lake St. Clair beaches. Fecal E. coli uidA sequences exhibited 81 alleles that overlapped with the environmental set. An algorithm to assign alleles to different host sources averaged approximately 75% correct classification with the fecal data set. Using the same algorithm, the percent of environmental isolates assignable to humans decreased significantly between Bear Creek-Red Run (30 +/- 3%) and the beaches (17 +/- 2%) (p < 0.05). Birds accounted for approximately 50% of assignable environmental isolates. For combined sewer isolates, the same algorithm assigned 51% to humans. These experiments demonstrate differences in the frequency of different E. coli strains at different locations in a watershed, and provide a "proof in principle" that sequence-based data can be used for microbial source tracking.     

Evaluation of biotechnological processes to obtain ethanol from recycled paper sludge

Journal of Material Cycles and Waste Management - Finding innovative solutions to manage waste and to expand the production of biofuels are some of the current challenges. Pulp and paper sectors,...     

A knowledge network to promote the use and valorization of wild food plants in the Pantanal and Cerrado,Brazil

Regional Environmental Change - The conservation and use of wild food plants should include local people in the decision-making process, and many countries have done so. However, interacting with...     

Foraging ants trade off further for faster: use of natural bridges and trunk trail permanency in carpenter ants

Trail-making ants lay pheromones on the substrate to define paths between foraging areas and the nest. Combined with the chemistry of these pheromone trails and the physics of evaporation, trail-laying and trail-following behaviours provide ant colonies with the quickest routes to food. In relatively uniform environments, such as that provided in many laboratory studies of trail-making ants, the quickest route is also often the shortest route. Here, we show that carpenter ants (Camponotus rufipes), in natural conditions, are able to make use of apparent obstacles in their environment to assist in finding the fastest routes to food. These ants make extensive use of fallen branches, twigs and lianas as bridges to build their trails. These bridges make trails significantly longer than their straight line equivalents across the forest floor, but we estimate that ants spend less than half the time to reach the same point, due to increased carriage speed across the bridges. We also found that these trails, mainly composed of bridges, are maintained for months, so they can be characterized as trunk trails. We suggest that pheromone-based foraging trail networks in field conditions are likely to be structured by a range of potentially complex factors but that even then, speed remains the most important consideration.     

Mass balance in the monitoring of pollutants in tidal rivers of the Guanabara Bay, Rio de Janeiro, Brazil

This study addressed the identification and monitoring of pollution sources of terrestrial origin in rivers (domestic sewage and industrial effluents) and critical fluvial segments in highly polluted environments under tidal influence (mixing marine and continental sources) from Guanabara Bay Basin, Rio de Janeiro, Brazil. The mass balance of contaminants was determined in conditions of continuous flow (low tide) during dry season (lower dilution capability). The results allowed the evaluation of the potential of contaminant mass generation by the different river segments and the estimation of their natural and anthropogenic components. The water quality of Igua?ú and Sarapuí Rivers were evaluated for metals and biochemical oxygen demand. The method gave an excellent response, including the possibility of sources identification and contaminated river segments ranking. The approach also offers fast execution and data interpretation, being highly efficient.     

The use of respiration indices in the composting process: a review.

Respiration is directly related to the metabolic activity of a microbial population. Micro-organisms respire at higher rates in the presence of large amounts of bioavailable organic matter while respiration rate is slower if this type of material is scarce. In the composting process respiration activity has become an important parameter for the determination of the stability of compost. It is also used for the monitoring of the composting process and it is considered an important factor for the estimation of the maturity of the material. A wide range of respirometric protocols has been reported based either on CO2 production, O2 uptake or release of heat. The most common methods are those based on O2 uptake. Respirometric assays are affected by a number of parameters including temperature, humidity, and both incubation and pre-incubation conditions. Results from respirometries are generally expressed as 'respiration indices', most of them with their own units and basis. In consequence, some confusion exists when referring and comparing respiration indices. This is particularly important because current and future legislations define and measure the biological stability of waste on the basis of respiration activity of the material. This paper discusses and compares most common respiration indices currently used.     

Bioavailability, ecotoxicity, and geological characteristics of trace lead in sediments from two sites on Negro River, Uruguay, South America

Bioassays of two sites along the Rio Negro in Uruguay indicate ecotoxicity, which could be attributable to trace concentrations of lead in river sediments. Monthly samples at two sites at Baygorria and Bonete locations were analyzed for both particle size and lead. Lead was determined by atomic spectrometry in river water and sediment and particle size by sieving and sedimentation. Data showed that Baygorria's sediments have greater percentage of clay than Bonete's (20.4 and 5.8%, respectively). Lead was measurable in Baygorria's sediments, meanwhile in Bonete's, it was always below the detection limit. In water samples, lead was below detection limit at both sites. Bioassays using sub-lethal growth and survival test with Hyalella curvispina amphipod, screening with bioluminescent bacteria Photobacterium leiognathi, and acute toxicity bioassay with Pimephales promelas fish indicated toxicity at Baygorria, with much less effect at Bonete. Even though no lethal effects could be demonstrated, higher sub-lethal toxicity was found in samples from Baygorria site, showing a possible concentration of the contaminant in the clay fraction.     

Short- and long-term importance of small sharks in the diet of the rare deep-sea shark Dalatias licha

Knowing the trophic ecology of marine predators is essential to develop an understanding of their ecological role in ecosystems. Research conducted on deep-sea and threatened shark species is limited. Here, by combining analyses of individual stomach contents and stable isotope values, we examined the trophic ecology (dietary composition and trophic position) of the kitefin shark Dalatias licha, a deep-sea shark considered as near threatened globally and as data deficient in the Mediterranean Sea. Results revealed the importance of small sharks in the diet of the kitefin shark at short- and long-term scales, although fin-fish, crustaceans and cephalopods were also found. Predation on sharks reveals the high trophic position of the kitefin shark within the food web of the western Mediterranean Sea. Stable isotope values from liver and muscle tissues confirmed our results from stomach content analysis and the high trophic position.