Modeling carcass removal time for avian mortality assessment in wind farms using survival analysis

In monitoring studies at wind farms, the estimation of bird and bat mortality caused by collision must take into account carcass removal by scavengers or decomposition. In this paper we propose the use of survival analysis techniques to model the time of carcass removal. The proposed method is applied to data collected in ten Portuguese wind farms. We present and compare results obtained from semiparametric and parametric models assuming four main competing lifetime distributions (exponential, Weibull, log-logistic and log-normal). Both homogeneous parametric models and accelerated failure time models were used. The fitted models enabled the estimation of the carcass persistence rates and the calculation of a scavenging correction factor for avian mortality estimation. Additionally, we discuss the impact that the distributional assumption can have on parameter estimation. The proposed methodology integrates the survival probability estimation problem with the analysis of covariate effects. Estimation is based on the most suitable model while simultaneously accounting for censored observations, diminishing scavenging rate estimation bias. Additionally, the method establishes a standardized statistical procedure for the analysis of carcass removal time in subsequent studies.     

Biogeography of Atlantic and Mediterranean ascidians

Ascidian fauna have been intensively studied in the Atlantic Ocean, adjacent subpolar regions and Mediterranean Sea for the last 20 years. Here, we have described current species distribution patterns and identified nested areas of endemism using parsimony analysis of endemicity (PAE). We also identified diversity hotspots, areas in which species occurred exclusively, and gaps in information about distribution patterns. Finally, we compared ascidian distributions among various proposed biogeographic divisions. The comprehensive literature review provided data on the geographic distribution of 627 species of ascidians. In the West Atlantic, there were three peaks in richness: north Caribbean—96 species, São Paulo and Rio de Janeiro—61 species and the subantarctic region—54 species. In the eastern Atlantic, the greatest richness occurred on Spanish and French coasts—91 species and in Senegal—83 species. In the Mediterranean, the greatest richness was in Spain and France—142 species and Italy—127 species. PAE designated 20 areas of endemism nested within eight larger regions that were more or less in agreement with realms or provinces of previous studies: North Atlantic, Caribbean, southeastern Brazil, Magellanic, Subantarctic, Tropical West Africa, South Africa, and Mediterranean. Distribution patterns of the Ascidiacea, in general, followed previously proposed divisions of regions and provinces in the Atlantic and adjacent polar regions, but not subdivisions of these regions.     

Characterisation of agroindustrial solid residues as biofuels and potential application in thermochemical processes

In the present work, selected agroindustrial solid residues from Brazil – biosolids from meat processing wastewater treatment and mixture of sawdust with these biosolids; residues from apple and orange juice industries; sugarcane bagasse; açaí kernels (Euterpe oleracea) and rice husk – were characterised as solid fuels and an evaluation of their properties, including proximate and ultimate composition, energy content, thermal behaviour, composition and fusibility of the ashes was performed. The lower heating value of the biomasses ranged from 14.31 MJ kg^?1 to 29.14 MJ kg^?1, on a dry and ash free basis (daf), all presenting high volatile matter content, varying between 70.57 wt.% and 85.36 wt.% (daf) what improves the thermochemical conversion of the solids. The fouling and slagging tendency of the ashes was predicted based on the fuel ash composition and on the ash fusibility correlations proposed in the literature, which is important to the project and operation of biomass conversion systems. The potential for application of the Brazilian agroindustrial solid residues studied as alternative energy sources in thermochemical processes has been identified, especially concerning direct combustion for steam generation.     

Observations on the preferential biodegradation of selected components of polyaromatic hydrocarbon mixtures

The capacity of the naphthalene degrading enzyme (NAH) system of Pseudomonas fluorescens 5R and a number of other NAH system bacterial isolates to degrade mixtures of polyaromatic hydrocarbons (PAHs) and heterocyclic compounds were examined. It was found that all the examined organisms displayed similar patterns of preferential compound degradation when presented with the same mixture. Using strains that possess portions of the NAH system, this preferential degradation was localized to the activity of naphthalene dioxygenase. Comparisons of the first-order rates of compound degradation with the structures of the mixture components indicated that increased deviation from the base structure of naphthalene led to slower disappearance. Structural features that were found to decrease the rate of compound degradation include an increase in the number of methyl substituents and an increase in the size of a substituent.     

A time-saving method for higher plant tests in hydroculture

For higher plant tests in hydroculture we developed a method to unify the usually separately performed germination and growth testing. This method renders unnecessary the time-consuming and laborious installation of the germinated plants into the growth system.     

Mutagenicity tests with gallic and tannic acid in the Salmonella/mammalian microsome assay

Gallic acid, tannic acid mixture and a purified fraction of tannic acid were evaluated for possible mutagenic activity in three strains of Salmonella typhimurium, TA98, TA100, and TA1535. These chemicals were not mutagenic either before or after activation with rat and woodchuck microsomal and cytosolic enzymes. However, tannic acid mixture and tannic acid fraction both gave a significantly (p = 0.05) dose-related reduction in the number of the revertant colonies, compared to the normal spontaneous revertants with no apparent toxic effects in the background lawn. With an agar diffusion assay, the chemicals exhibited toxic effects at 5000 micrograms/disc.     

A finite element method to solve a population dynamics stage-structured model of intertidal barnacles

Many marine organisms are fixed or highly sedentary as adults but the adult population may be strongly dependent on the oceanic transport of planktonic larvae. In order to assess interactions between oceanographic and biological processes that determine the population dynamics of marine organisms with a sessile adult phase restricted to the coastline and a planktonic larval phase, we present a stage-structured finite element model for the barnacle Balanus glandula that inhabits the rocky intertidal zone of central California, USA.     

Lack of innate preference for morph and species identity in mate-searching <Emphasis Type="Italic">Enallagma</Emphasis> damselflies

Insect mate recognition is often viewed as stereotypic, innate, and species-specific. However, male damselflies can learn to identify female-specific color morphs as potential mates. A suite of male mimicry hypotheses assume that heteromorphic females, which differ from males in color pattern, are more easily recognized as “female” and thus lack the inherent, anti-harassment advantage that the more male-like signal provides for andromorphs. Using two measures of male preference, we investigated whether naïve males have a preexisting sensory bias for a given morph color in Enallagma civile, a species that appeared to exhibit extreme plasticity in morph expression across generations within a breeding season. E. civile males raised in the absence of females exhibited no preference for either morph, whereas males raised with one female type exhibited a learned sensory bias for that morph. Male Enallagma also lacked a bias toward conspecific females over a congeneric sister species. In a naturally naïve population of Enallagma ebrium, males reacted sexually to both morphs of Enallagma hageni as often as they did to conspecific females, whose thoracic spectra were nearly identical with those of E. hageni. Moreover, despite the similar thoracic spectra of males and andromorphs, both of which reflected UV, males rarely reacted sexually to other males. Our results falsified implicit assumptions of male mimicry hypotheses, supported learned mate recognition, and suggested a scenario for speciation via sexual conflict.