Development of a PCR protocol for the detection of Escherichia coli O157:H7 and Salmonella spp. in surface water

Escherichia coli O157:H7 and Salmonella are pathogenic microorganisms that can cause severe gastrointestinal illness in humans. These pathogens may be transmitted in a variety of ways, including food and water. The presence of Salmonella and E. coli O157:H7 in surface waters constitutes a potential threat to human health when used for either drinking or recreation. As with most waterborne pathogens, Salmonella and E. coli O157:H7 are difficult to detect and enumerate with accuracy in surface waters due to methodological limitations. The aim of this study was to develop a protocol for the detection of Salmonella spp., E. coli O157:H7 and E. coli virulence genes (stx ₁, stx ₂ and eae) in water using a single enrichment step and PCR. In spiked water samples, PCR results showed high sensitivity (<3 CFU/L) for both microorganisms. The protocol developed in this study has been applied in different surface waters in association with microbiological and physical analysis. The frequency of PCR positive samples was 33% for Salmonella and 2% for E. coli O157:H7 producing intimin (eae) and Shiga-like toxin I (stx ₁). Moreover, the finding of amplicons corresponding to eae and stx ₁ genes in the absence of E. coli O157:H7 suggested the possible presence of other pathogenic bacteria that carry these genes (e.g. EHEC, Shigella strains). The results obtained showed that the developed protocol could be applied as a routine analysis of surface water for the evaluation of microbiological risks.     

Environmental study of two significant solid samples: gravitation dust sediment and soil

In this work are presented results of the complex study of two significant solid environmental samples: gravitation dust sediments (industrial pollutants, potential source of risk elements input to soils) and soils (component of the environment, potential source of risk elements input to food web). The first phase of this study was focused on the study of the significant chemical properties (phase composition, content of organic and inorganic carbon) of the dust and soil samples. In the second phase, the fractionation analysis was used on the evaluation of the mobility of chosen risk elements (Cu, Ni, Pb, Zn) in the studied samples. The single-step extractions were applied in the order of the isolation of the element forms (fractions), with different mobilities during defined ecological conditions by utilization of the following reagents: 1 mol dm^− 3 NH₄NO₃ for isolation of the “mobile” fraction, 0.05 mol dm^− 3 ethylenediaminetetraacetic acid and 0.43 mol dm^− 3 CH₃COOH for isolation of the “mobilizable” fraction, and 2 mol dm^− 3 HNO₃ for isolation of all releasable forms. On the basis of the results obtained in this study, it is possible to state that different origins and positions of solid environmental samples in the environment reflect in different chemical properties of their matrix. The different properties of the sample matrix result in different mobilities of risk elements in these kinds of samples. The fractionation analysis with single-step extraction for isolation element fractions is the method most suitable for easy checking of environmental pollution and for evaluation of risk elements cycle in the environment.     

Characterisation of the airborne pollen spectrum in Guadalajara (central Spain) and estimation of the potential allergy risk

Aerobiological research into airborne pollen diversity and seasonal variations in pollen counts has become increasingly important over recent decades due to the growing incidence of asthma, rhinitis and other pollen-related allergic conditions. Airborne pollen in Guadalajara (Castilla-La Mancha, Spain) was studied over a 6-year period (2008–2013) using a Hirst-type volumetric spore trap. The highest pollen concentrations were recorded from February to June, coinciding with the pollen season of the pollen types that most contribute to the local airborne pollen spectrum: Cupressaceae (32.2 %), Quercus (15.1 %), Platanus (13.2 %), Olea (8.3 %), Populus (7.8 %) and Poaceae (7.2 %). These are therefore critical months for allergy sufferers. The pollen calendar was typically Mediterranean and comprised 25 pollen types. Between January and March, Cupressaceae pollen concentrations exceeded allergy risk thresholds on 38 days. Other woody species such as Olea and Platanus have a shorter pollen season, and airborne concentrations exceeded allergy risk thresholds on around 13 days in each case. Poaceae pollen concentrations attained allergy risk levels on 26 days between May and July. Other highly allergenic pollen types included Urticaceae and Chenopodiaceae-Amaranthaceae, though these are less abundant than other pollen types in Guadalajara and did not exceed risk thresholds on more than 3 and 5 days, respectively.     

Up to 95 % reduction of chemical oxygen demand of slaughterhouse effluents using Fenton and photo-Fenton oxidation

Meat industries produce effluents containing high concentrations of organic and inorganic compounds, which must be removed before being discharged or reused. Advanced oxidation processes using Fenton reaction coupled with UV, solar radiation, and electrochemical oxidation are promising methods. Here, we treated the effluent from an anaerobic digester using: (a) the photoelectro-Fenton process, using a system with a Ti-RuO₂ anode and a carbon felt cathode, (b) the solar photo-Fenton process, using a batch reactor and a compound parabolic collector, and (c) a combination of Fenton and solar photo-Fenton processes. The effluent had an initial chemical oxygen demand (COD) of 1159 mgL^?1, and we obtained high removal efficiencies of COD, up to 95 %, using the combination of Fenton and solar photo-Fenton processes.     

Selenium and nano-selenium in plant nutrition

Selenium (Se) is a naturally occurring metalloid element which occurs nearly in all environments. Se is considered as a finite and non-renewable resource on the Earth. The common sources of Se in earth’s crust occur in association with sulfide minerals such as metal selenide, whereas it is rarely found in elemental form (Se⁰). While there is no evidence of Se need for higher plants, several reports show that when Se added at low concentrations, Se exerts beneficial effects on plant growth. Se may act as quasi-essential micronutrient through altering different physiological and biochemical traits. Thus, plants vary considerably in their physiological and biochemical response to Se. This review focusses on the physiological importance of Se forms as well as different Se fertilizers for higher plants, especially plant growth, uptake, transport, and metabolism.     

Identification of heavy metal sources by multivariable analysis in a typical Mediterranean city (SE Spain)

Problems associated with heavy metal characterization in the majority of sites are often due to multiple sources of pollution. This work presents the results through the use of advanced statistical techniques to identify sources of soil heavy metals in a typical Mediterranean city. The multivariable analysis performed on seven metals identified four sources controlling their variability. Cr, Mn, and Ni contents were associated to soil parent materials; Cd and Pb contents were related to anthropogenic activities, specifically industrial activities and traffic; Cu content is controlled by long-term application of inorganic fertilizers in agricultural areas. Finally, zinc concentration is associated to commercial and outdoor activities in the area. These results were supported by the fact that metals associated to parent material (Cr, Mn, and Ni) were better correlated with soil lithogenic properties, while anthropogenic metals were correlated with more variable soil constituents.     

Evaluation of a simultaneous sampling method of PAHs, PCDD/Fs and dl-PCBs in ambient air

The Stockholm Convention on Persistent Organic Pollutants (POPs) was signed in May 2001 by 127 countries. Currently, 12 substances are regulated by the convention, and the work on finding new candidate chemicals to the convention has started. Among these 12 substances, dibenzo-p-dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs) and polychlorinated biphenyls (PCBs) are the objects of this study. There are no European standard methods for the simultaneous determination of these microorganic compounds, together with polycyclic aromatic hydrocarbons (PAHs) in ambient air--they must be referred to three different methods developed by the U.S. Environmental Protection Agency (EPA). The quali-quantitative analysis of these microorganic pollutants is an important challenge due to the low concentrations at which they may be present. In this study, the development of a simplified, alternative, fast and affordable sampling method for the determination of PAHs, PCDDs, PCDFs and PCBs in ambient air was performed. The sampling time was extended from 24 h to 7 d in order to enrich the sample, to fall within the instrumental limits of detection and to reduce the number of samples to be processed and, therefore, errors that may arise. First of all, experiments with labelled standards were conducted in the research area of Montelibretti (rural station, which is sited about 20 km northeast of Rome), with the purpose of optimizing sampling efficiency. Finally, the method was applied to the analysis of these compounds in the air of a suburban area with small industrial plants in order to evaluate the feasibility of the proposed sampling method system, by comparing concentrations of native compounds acquired during simultaneous daily and weekly sampling.     

Myoelectric manifestation of muscle fatigue in repetitive work detected by means of miniaturized sEMG sensors

Upper limb work-related musculoskeletal disorders have a 12-month prevalence ranging from 12 to 41% worldwide and can be partly caused by handling low loads at high frequency. The association between the myoelectric manifestation of elbow flexor muscle fatigue and occupational physical demand has never been investigated. It was hypothesized that an elbow flexor muscle fatigue index could be a valid risk indicator in handling low loads at high frequency. This study aims to measure the myoelectric manifestation of muscle fatigue of the three elbow flexor muscles during the execution of the work tasks in different risk conditions. Fifteen right-handed healthy adults were screened using a movement analysis laboratory consisting of optoelectronic, dynamometer and surface electromyographic systems. The main result indicates that the fatigue index calculated from the brachioradialis is sensitive to the interaction among risk classes, session and gender, and above all it is sensitive to the risk classes.     

AMEG: the new SETAC advisory group on aquatic macrophyte ecotoxicology

Introduction and background

Primary producers play critical structural and functional roles in aquatic ecosystems; therefore, it is imperative that the potential risks of toxicants to aquatic plants are adequately assessed in the risk assessment of chemicals. The standard required macrophyte test species is the floating (non-sediment-rooted) duckweed Lemna spp. This macrophyte species might not be representative of all floating, rooted, emergent, and submerged macrophyte species because of differences in the duration and mode of exposure; sensitivity to the specific toxic mode of action of the chemical; and species-specific traits (e.g., duckweed's very short generation time).

Discussion and perspectives

These topics were addressed during the workshop entitled “Aquatic Macrophyte Risk Assessment for Pesticides” (AMRAP) where a risk assessment scheme for aquatic macrophytes was proposed. Four working groups evolved from this workshop and were charged with the task of developing Tier 1 and higher-tier aquatic macrophyte risk assessment procedures. Subsequently, a SETAC Advisory Group, the Macrophyte Ecotoxicology Group (AMEG) was formed as an umbrella organization for various macrophyte working groups. The purpose of AMEG is to provide scientifically based guidance in all aspects of aquatic macrophyte testing in the laboratory and field, including prospective as well as retrospective risk assessments for chemicals. As AMEG expands, it will begin to address new topics including bioremediation and sustainable management of aquatic macrophytes in the context of ecosystem services.     

Prediction of lichen diversity in an UNESCO biosphere reserve – correlation of high resolution remote sensing data with field samples

The present study focuses on developing models to predict lichen species richness in a UNESCO Biosphere Reserve of the Swiss Pre-Alps following a gradient of land-use intensity combining remote sensing data and regression models. The predictive power of the models and the obtained r ranging from 0.5 for lichens on soil to 0.8 for lichens on trees can be regarded as satisfactory to good, respectively. The study revealed that a combination of airborne and spaceborne remote sensing data produced a variety of ecological meaningful variables.