Using machine learning to disentangle homonyms in large text corpora

Systematic reviews are an increasingly popular decision‐making tool that provides an unbiased summary of evidence to support conservation action. These reviews bridge the gap between researchers and managers by presenting a comprehensive overview of all studies relating to a particular topic and identify specifically where and under which conditions an effect is present. However, several technical challenges can severely hinder the feasibility and applicability of systematic reviews, for example, homonyms (terms that share spelling but differ in meaning). Homonyms add noise to search results and cannot be easily identified or removed. We developed a semiautomated approach that can aid in the classification of homonyms among narratives. We used a combination of automated content analysis and artificial neural networks to quickly and accurately sift through large corpora of academic texts and classify them to distinct topics. As an example, we explored the use of the word reintroduction in academic texts. Reintroduction is used within the conservation context to indicate the release of organisms to their former native habitat; however, a Web of Science search for this word returned thousands of publications in which the term has other meanings and contexts. Using our method, we automatically classified a sample of 3000 of these publications with over 99% accuracy, relative to a manual classification. Our approach can be used easily with other homonyms and can greatly facilitate systematic reviews or similar work in which homonyms hinder the harnessing of large text corpora. Beyond homonyms we see great promise in combining automated content analysis and machine‐learning methods to handle and screen big data for relevant information in conservation science.     

Herd no More: Livestock Husbandry Policies and the Environment in Israel

Livestock production in both industrial systems, where livestock are packed tightly together, and in highly traditional systems, where a shepherd follows her herd in dispersed rangelands, are cited as key contributors in some of the most acute environmental problems around the globe. Israel is one of the few countries where both of these systems exist, with surprisingly little contact between them. The environmental impact of the sectors were examined along with Israel’s public policies in the field. While historically, much attention has been placed on the contribution of the Bedouin pastoralists to desertification and erosion, this may be linked to historic misapprehension about actual impacts of goats on local rangelands as well as political motivations and concerns about losing national sovereignty over large areas of rangelands. The true environmental effects appear to be minor. A far more critical concern is water pollution caused by the industrial sector of livestock production—an issue that recently has attracted considerable government attention and investment in a successful dairy infrastructure initiative. The divisions between governmental supports for the Jewish and Arab sectors of livestock management are inconsistent with efficient environmental management. Policies should be designed to encourage Bedouin to find ways to sustainably continue their traditional livestock husbandry practises, which today are largely associated with ecological benefits and constitute a unique cultural asset for Israel and the world.     

Reduction of plastic carrier bag use: An analysis of alternatives in Israel

Plastic carrier bags have been drawing the attention of the public and politicians. Different policy measures to reduce the environmental burden of these bags have been implemented and more are planned. The research analyzed the actual environmental aspects of consumption and use of plastic carrier bags and assessed the effectiveness of the proposed regulation in Israel. Since plastic bags are provided free of charge, people have a tendency to use these bags excessively, therefore a rigorous educational program should address this trend. However, the environmental load imposed by the bags is more a politically correct issue than an actual environmental hazard, and therefore the means for reducing their use should not include a high levy or total elimination of these bags.     

Reproductive isolation between Pogonomyrmex rugosus and two lineages with genetic caste determination

Hybrid speciation occurs when combination of two interspecific genomes results in individuals that are of high fitness but reproductively incompatible with the parental species. Although hybrid speciation is a relatively common source of new species in plants, it appears to be a much rarer occurrence in animal taxa. Here we report on reproductive isolation and range overlap between the rough harvester ant Pogonomyrmex rugosus and two lineages with hybrid genotypes (H 1 and H2). Both lineages obligately interbreed and produce genetically distinct queen and worker offspring, a phenomenon referred to as genetic caste determination (GCD). Diploid offspring produced by gametes of the same lineage develop only into queens, whereas diploid offspring derived from gametes of distinct lineages develop into workers. We investigated small-scale patterns of gene flow between the parent and the two H lineages by sampling along an 80-km transect between a pure P. rugosus population and a two-lineage population. Microsatellite and mitochondrial markers both indicated virtually no gene flow between the parent species and either lineage even at sites where parental and H-lineage colonies co-occurred. The geographic ranges of the parental species and the two-lineage population were essentially parapatric, with a surprisingly narrow band of overlap and evidence of spatial structuring even at microgeographic scales within the transition zone. This suggests that ecological competition with the parent species plays a significant role in determining the evolutionary persistence and current distribution of the hybrid lineages and the genetic caste system.     

The workload and performance relationship in the real world: a study of police officers in a field shooting exercise.

We examined the relationship between perceived workload and performance by evaluating the responses of police officers to 4 different draw-and-shoot tasks in a night field training exercise which was part of their regular training regimen. Sixty-two police officers volunteered to participate. Results demonstrated an associative trend among 3 tasks where shooting performance decreased and workload increased as the tasks became more complex. However, performance on 1 specific shooting task did not correlate with any of the other 3 tasks, and in this 1 exceptional case, insensitivities were observed in which workload increased but performance remained constant.     

Determining gestational age using genome methylation profile: A novel approach for fetal medicine

Gestational age determination by traditional tools (last menstrual period, ultrasonography measurements and Ballard Maturational Assessment in newborns) has major limitations and therefore there is a need to find different approaches. In this study, we looked for a molecular marker that can be used to determine the accurate gestational age of the newborn. To this end, we performed reduced representation bisulfite sequencing (RRBS) on 41 cord blood and matching placenta samples from women between 25 and 40 weeks of gestation and generated an epigenetic clock based on the methylation level at different loci in the genome. We identified a set of 332 differentially methylated regions (DMRs) that undergo demethylation in late gestational age in cord blood cells and can predict the gestational age (r = −.7, P = 2E-05). Once the set of 411 DMRs that undergo de novo methylation in late gestational age was used in combination with the first set, it generated a more accurate clock (R = .77, P = 1.87E-05). We have compared gestational age determined by Ballard score assessment with our epigenetic clock and found high concordance. Taken together, this study demonstrates that DNA methylation can accurately predict gestational age and thus may serve as a good clinical predictor.