Conservation Strategies for Species Affected by Apparent Competition

Apparent competition is an indirect interaction between 2 or more prey species through a shared predator, and it is increasingly recognized as a mechanism of the decline and extinction of many species. Through case studies, we evaluated the effectiveness of 4 management strategies for species affected by apparent competition: predator control, reduction in the abundances of alternate prey, simultaneous control of predators and alternate prey, and no active management of predators or alternate prey. Solely reducing predator abundances rapidly increased abundances of alternate and rare prey, but observed increases are likely short‐lived due to fast increases in predator abundance following the cessation of control efforts. Substantial reductions of an abundant alternate prey resulted in increased predation on endangered huemul (Hippocamelus bisulcus) deer in Chilean Patagonia, which highlights potential risks associated with solely reducing alternate prey species. Simultaneous removal of predators and alternate prey increased survival of island foxes (Urocyon littoralis) in California (U.S.A.) above a threshold required for population recovery. In the absence of active management, populations of rare woodland caribou (Rangifer tarandus caribou) continued to decline in British Columbia, Canada. On the basis of the cases we examined, we suggest the simultaneous control of predators and alternate prey is the management strategy most likely to increase abundances and probabilities of persistence of rare prey over the long term. Knowing the mechanisms driving changes in species’ abundances before implementing any management intervention is critical. We suggest scientists can best contribute to the conservation of species affected by apparent competition by clearly communicating the biological and demographic forces at play to policy makers responsible for the implementation of proposed management actions. Estrategias de Conservación para Especies Afectadas por Competencia Aparente     

Biological impacts of ocean acidification: a postgraduate perspective on research priorities

Research into the effects of ocean acidification (OA) on marine organisms has greatly increased during the past decade, as realization of the potential dramatic impacts has grown. Studies have revealed the multifarious responses of organisms to OA conditions, indicating a high level of intra- and interspecific variation in species’ ability to accommodate these alterations. If we are to provide policy makers with sound, scientific input regarding the expected consequences of OA, we need a broader understanding of these predicted changes. As a group of 20 multi-disciplinary postgraduate students from around the globe, with a study focus on OA, we are a strong representation of ‘next generation’ scientists in this field. In this unique cumulative paper, we review knowledge gaps in terms of assessing the biological impacts of OA, outlining directions for future research.     

Hierarchical patch choice by an insectivorous bat through prey availability components

Food availability does not only refer to the abundance of edible items; accessibility and detectability of food are also essential components of the availability concept. Constraints imposed by a habitat’s physical structure on the accessibility and detectability of food have been seldom treated simultaneously to the abundance of prey at the foraging patch level in observational studies. We designed a research that allowed decoupling the effects of microhabitat structure and prey abundance on foraging patch selection of the trawling insectivorous long-fingered bat (Myotis capaccinii). The use of different patches of river was surveyed by radiotelemetry during three periods of the bat’s annual cycle, and prey abundance was accordingly measured in and out of the hunting grounds of the tracked bats by insect traps emulating the species’ foraging. Bats preferentially used river stretches characterised by an open course and smooth water surfaces, i.e. they used the most suitable patches in terms of prey accessibility and detectability, respectively. In addition, prey abundance in the selected river stretches was higher than in others where bat activity was not recorded, although the latter also offered good access and prey detection possibilities. Bats also shifted foraging stretches seasonally, likely following the spatiotemporal dynamics of prey production over the watershed. We suggest that the decisions of bats during the patch choice process fitted a hierarchical sequence driven first by the species’ morphological specialisations and ability to hunt in unobstructed spaces, then by the detectability of prey on water surfaces and, finally, by the relative abundance of prey.     

Phototransformation of <Emphasis Type="SmallCaps">l</Emphasis>-tryptophan and formation of humic substances in water

Humic substances are poorly known, though they represent a major pool of non-biotic organic carbon on earth. In particular, there is little knowledge on the formation of humic substances by irradiation of organic matter dissolved in waters. Specifically, it is known that humic substances can be formed from proteins by photochemical processes in surface waters, but the role of single amino acids and their transformation pathways are not yet known. Therefore, here we studied the phototransformation of aqueous l-tryptophan under simulated sunlight. Irradiated l-tryptophan solutions were analyzed by absorption, fluorescence, nuclear magnetic resonance (NMR) and electron paramagnetic resonance (EPR) spectroscopies, chromatography, potentiometry and mass spectrometry (MS). The solutions appeared turbid after irradiation; therefore, nephelometry and dynamic laser light scattering were used to characterize the suspended particles. Results show that about 95% of l-tryptophan was degraded in 8-h irradiation, undergoing deamination and decarboxylation of the amino acidic moieties to release ammonium and formate. The MS signal at m/z 146 suggests the formation of 3-ethylindole, while pH-metric and NMR data revealed the presence of hydroxylated compounds. The phototransformation intermediates of l-tryptophan had fluorescence and absorption spectra similar to those of humic substances, they were able to produce ^·OH upon irradiation and tended to aggregate by both ionic and hydrophobic interactions. Overall, our findings reveal for the first time the nature of products formed upon phototransformation of l-tryptophan. Interestingly, the transformation of l-tryptophan is quite different from that of the previously studied l-tyrosine, although both compounds produce humic-like materials under irradiation.     

Aerogels and metal–organic frameworks for environmental remediation and energy production

Environmental pollution and climate change are requiring new methods to clean pollutants and produce sustainable energy. Aerogels and metal organic frameworks are emerging as advanced porous materials with higher functionality, high surface area, high porosity and flexible chemistry. Aerogels are dried gels prepared using the sol–gel procedure, whereas metal organic frameworks are networks of organic ligands and metal ions connected by coordination bonds. Applications of aerogels include the removal of heavy metals, CO₂ capture and reduction, photodegradation of pollutants, air cleanup and water splitting. This article reviews the synthesis and types of aerogels and metal organic frameworks, and the application to pollutant removal, energy production including hydrogen, methane reforming, CO₂ conversion and NOx removal.     

Granulation of anammox microorganisms for autotrophic nitrogen removal from wastewater

Excessive discharge of nutrients in waters induces pollution such as such as eutrophication. Conventional methods to treat waters are expensive. Alternatively, anaerobic ammonium oxidation, termed “anammox”, has been recently developped with benefits such as low sludge production, 50% less aeration demand, no external carbon supply, 60% less power consumption, and 90% reduction of greenhouse gas emissions. However, anammox is limited by long start-up periods due to the low growth rate of anammox bacteria. This issue can be solved by complete retention of biomass by reactor modification or by formation of anammox granules. This article reviews the mechanisms of anammox granulation and biogranulation models. We present factors involved in the granulation processes such as hydrodynamic shear force, extracellular polymeric substances, hydraulic retention time, seed sludge and bioreactors. We also discuss the interaction of proteins and polysaccharides in anammox granules.     

Insights on plant interaction between dominating species from patterns of plant association: expected covariance of pin-point cover measurements of two species

It has been suggested that in order to infer ecological processes from observed patterns of species abundance we need to investigate the covariance in species abundance. Consequently, an expression for the expected covariance of pin-point cover measurements of two species is developed. By comparing the observed covariance with the expected covariance we get a new type of information on the spatial arrangement of two species. Here the discrepancy between the observed and expected covariance may be thought of as a measure of the spatial configuration of the two species that may indicate underling ecological processes. The method is applied in a case study of Calluna vulgaris and Deschampsia flexuosa on dry heathland sites. The observed covariance of Calluna and Deschampsia at the level of the sites was positively and significantly correlated with the expected covariance. Negative covariance was observed on sites where both Calluna and Deschampsia had a high cover, which is in agreement with the notion that both species form distinct patches. Oppositely, at sites where both species have a low cover, we found that both the expected and observed covariance were positive. The proposed measure for the expected covariance of two species does capture information on the combined spatial configuration of the two species if the species are common. We show how this may be relevant for understanding the underlying ecological processes leading to the observed covariance.     

Halton iterative partitioning: spatially balanced sampling via partitioning

A new spatially balanced sampling design for environmental surveys is introduced, called Halton iterative partitioning (HIP). The design draws sample locations that are well spread over the study area. Spatially balanced designs are known to be efficient when surveying natural resources because nearby locations tend to be similar. The HIP design uses structural properties of the Halton sequence to partition a resource into nested boxes. Sample locations are then drawn from specific boxes in the partition to ensure spatial diversity. The method is conceptually simple and computationally efficient, draws spatially balanced samples in two or more dimensions and uses standard design-based estimators. Furthermore, HIP samples have an implicit ordering that can be used to define spatially balanced over-samples. This feature is particularly useful when sampling natural resources because we can dynamically add spatially balanced units from the over-sample to the sample as non-target or inaccessible units are discovered. We use several populations to show that HIP sampling draws spatially balanced samples and gives precise estimates of population totals.     

Small-scale entrainment in inclined gravity currents

We investigate the effect of buoyancy on the small-scale aspects of turbulent entrainment by performing direct numerical simulation of a gravity current and a wall jet. In both flows, we detect the turbulent/nonturbulent interface separating turbulent from irrotational ambient flow regions using a range of enstrophy iso-levels spanning many orders of magnitude. Conform to expectation, the relative enstrophy isosurface velocity \(v_n\) in the viscous superlayer scales with the Kolmogorov velocity for both flow cases. We connect the integral entrainment coefficient E to the small-scale entrainment and observe excellent agreement between the two estimates throughout the viscous superlayer. The contribution of baroclinic torque to \(v_n\) is negligible, and we show that the primary reason for reduced entrainment in the gravity current as compared to the wall-jet are 1) the reduction of \(v_n\) relative to the integral velocity scale \(u_T\); and 2) the reduction in the surface area of the isosurfaces.     

A two-dimensional inviscid model of the gravity-current head by Lagrangian block simulation

A two-dimensional inviscid model of the gravity-current head produced by the release of a relatively small volume of dense fluid from behind a tall lock gate is constructed by Lagrangian block simulation. Three numerical experiments are conducted for the lock’s height-to-length aspect ratios H/L _o  = 8, 4 and 2. The front speeds obtained by the simulations agree with the laboratory observation for a similar range of aspect ratios. The floor velocity in the wake behind these heads is found to be greater than their front speed. The high floor velocity is caused by the impingement of the coherent wake vortex on the floor. It is a condition that permits these gravity-current heads to maintain their structural integrity so that the fine sediments can travel with the head over long distances on the ocean floor. The structural coherence of the current head depends on the lock aspect ratio. The gravity-current head produced by the release from the lock with the highest aspect ratio of H/L _o  = 8 is most coherent and relatively has the greatest floor velocity and the least trailing current behind the head.