Scale-dependent variation in coral community similarity across sites, islands, and island groups

Community similarity is the proportion of species richness in a region that is shared on average among communities within that region. The slope of local richness (alpha diversity) regressed on regional richness (gamma diversity) can serve as an index of community similarity across regions with different regional richness. We examined community similarity in corals at three spatial scales (among transects at a site, sites on an island, and islands within an island group) across a 10 000-km longitudinal diversity gradient in the west-central Pacific Ocean. When alpha diversity was regressed on gamma diversity, the slopes, and thus community similarity, increased with scale (0.085, 0.261, and 0.407, respectively) because a greater proportion of gamma diversity was subsumed within alpha diversity as scale increased. Using standard randomization methods, we also examined how community similarity differed between observed and randomized assemblages and how this difference was affected by spatial separation of species within habitat types and specialization of species to three habitat types (reef flats, crests, and slopes). If spatial separation within habitat types and/or habitat specialization (i.e., underdispersion) occurs, fewer species are shared among assemblages than the random expectation. When the locations of individual coral colonies were randomized within and among habitat types, community similarity was 46-47% higher than that for observed assemblages at all three scales. We predicted that spatial separation of coral species within habitat types should increase with scale due to dispersal/extinction dynamics in this insular system, but that specialization of species to different habitat types should not change because habitat differences do not change with scale. However, neither habitat specialization nor spatial separation within habitat types differed among scales. At the two larger scales, each accounted for 22-24% of the difference in community similarity between observed and randomized assemblages. At the smallest scale (transect-site), neither spatial separation within habitat types nor habitat specialization had significant effects on community similarity, probably due to the small size of transect samples. The results suggest that coral species can disperse among islands in an island group as easily as they can among sites on an island over time scales that are relevant to their establishment and persistence on reefs.     

Associations of forest bird species richness with housing and landscape patterns across the USA.

In the United States, housing density has substantially increased in and adjacent to forests. Our goal in this study was to identify how housing density and human populations are associated with avian diversity. We compared these associations to those between landscape pattern and avian diversity, and we examined how these associations vary across the conterminous forested United States. Using data from the North American Breeding Bird Survey, the U.S. Census, and the National Land Cover Database, we focused on forest and woodland bird communities and conducted our analysis at multiple levels of model specificity, first using a coarse-thematic resolution (basic models), then using a larger number of fine-thematic resolution variables (refined models). We found that housing development was associated with forest bird species richness in all forested ecoregions of the conterminous United States. However, there were important differences among ecoregions. In the basic models, housing density accounted for < 5% of variance in avian species richness. In refined models, 85% of models included housing density and/or residential land cover as significant variables. The strongest guild response was demonstrated in the Adirondack-New England ecoregion, where 29% of variation in richness of the permanent resident guild was associated with housing density. Model improvements due to regional stratification were most pronounced for cavity nesters and short-distance migrants, suggesting that these guilds may be especially sensitive to regional processes. The varying patterns of association between avian richness and attributes associated with landscape structure suggested that landscape context was an important mediating factor affecting how biodiversity responds to landscape changes. Our analysis suggested that simple, broadly applicable, land use recommendations cannot be derived from our results. Rather, anticipating future avian response to land use intensification (or reversion to native vegetation) has to be conditioned on the current landscape context and the species group of interest. Our results show that housing density and residential land cover were significant predictors of forest bird species richness, and their prediction strengths are likely to increase as development continues.     

The hypoxia avoidance behaviour of juvenile Atlantic cod (<Emphasis Type="Italic">Gadus morhua</Emphasis> L.) depends on the provision and pressure level of an O<Subscript>2</Subscript> refuge

The frequency of low O₂ (hypoxia) has increased in coastal marine areas but how fish avoid deleterious water masses is not yet clear. To assess whether the presence and oxygen pressure (PO₂) level of an O₂ refuge affects the hypoxia avoidance behaviour of fish, individual Atlantic cod (Gadus morhua L.) were exposed to a range of O₂ choices in a 2-way choice chamber at 11.4°C over two different experiments. Cod in the first experiment were allowed access to a fixed O₂ refuge (fully air-saturated seawater) whilst oxygen pressure (PO₂) on the other side was reduced in steps to a critically low level, i.e. 4.3 kPa—a point where cod can no longer regulate O₂ consumption. Under these conditions, cod did not avoid any level of hypoxia and fish swimming speed also remained unchanged. In contrast, strong avoidance reactions were exhibited in a second experiment when fish were again exposed to 4.3 kPa but the safety, i.e. PO₂, of the refuge was reduced. Fish not only spent less time at 4.3 kPa as a result of fewer sampling visits but they also swam at considerably slower speeds. The presence of an avoidance response was thus strongly related to refuge PO₂ and it is unlikely that cod, and possibly other fish species, would enter low O₂ to feed in the wild if a sufficiently safe O₂ refuge was not available. It is therefore hypothesized that the feeding range of fish may be heavily compressed if hypoxia expands and intensifies in future years.     

Seasonal migrations of black bears (Ursus americanus): causes and consequences

American black bears frequently abandon their home ranges in late summer and move to feeding areas to fatten themselves for hibernation. We examined seasonal movements of 206 radio-collared bears in north-central Minnesota during 1981–1990. We exploited the variability in this long-term data set to test tradeoffs for animals leaving their home range. Late summer movements were common for both sexes and all ages (39% of females, 44% of males), but were variable from year-to-year in prevalence, timing, and destination. Bears typically left their summer home ranges in August and returned ~6 weeks later in September or October. Most traveled southward, where acorns were more plentiful (median = 10 km for females, 26 km for males; maximum = 168 km). These facultative migrations were most common when rich resources were available outside home ranges. Bears were least apt to leave when foods were scarce in their home range, possibly sensing a risk of migrating during a widespread food failure. Among females, those whose body mass was close to a reproductive threshold were most prone to migrate. Migrating bears were less likely to be killed by hunters, suggesting that they were especially vigilant.     

Modelling forest management within a global vegetation model—Part 2: Model validation from a tree to a continental scale

The construction of a new forest management module (FMM) within the ORCHIDEE global vegetation model (GVM) allows a realistic simulation of biomass changes during the life cycle of a forest, which makes many biomass datasets suitable as validation data for the coupled ORCHIDEE-FM GVM. This study uses three datasets to validate ORCHIDEE-FM at different temporal and spatial scales: permanent monitoring plots, yield tables, and the French national inventory data. The last dataset has sufficient geospatial coverage to allow a novel type of validation: inventory plots can be used to produce continuous maps that can be compared to continuous simulations for regional trends in standing volumes and volume increments. ORCHIDEE-FM performs better than simple statistical models for stand-level variables, which include tree density, basal area, standing volume, average circumference and height, when management intensity and initial conditions are known: model efficiency is improved by an average of 0.11, and its average bias does not exceed 25%. The performance of the model is less satisfying for tree-level variables, including extreme circumferences, tree circumference distribution and competition indices, or when management and initial conditions are unknown. At the regional level, when climate forcing is accurate for precipitation, ORCHIDEE-FM is able to reproduce most productivity patterns in France, such as the local lows of needleleaves in the Parisian basin and of broadleaves in south-central France. The simulation of water stress effects on biomass in the Mediterranean region, however, remains problematic, as does the simulation of the wood increment for coniferous trees. These pitfalls pertain to the general ORCHIDEE model rather than to the FMM. Overall, with an average bias seldom exceeding 40%, the performance of ORCHIDEE-FM is deemed reliable to use it as a new modelling tool in the study of the effects of interactions between forest management and climate on biomass stocks of forests across a range of scales from plot to country.     

The effects of forest harvest intensity in combination with wind disturbance on carbon dynamics in Lake States Mesic Forests

Total forest carbon (C) storage is determined by succession, disturbances, climate, and the edaphic properties of a site or region. Forest harvesting substantially affects C dynamics; these effects may be amplified if forest harvesting is intensified to provide biofuel feedstock. We tested the effects of harvest intensity on landscape C using a simulation modeling approach that included C dynamics, multiple disturbances, and successional changes in composition. We developed a new extension for the LANDIS-II forest landscape disturbance and succession model that incorporates belowground soil C dynamics derived from the CENTURY soil model. The extension was parameterized and calibrated using data from an experimental forest in northeastern Wisconsin, USA. We simulated a 9800 ha forested landscape over 400 years with wind disturbance combined with no harvesting, harvesting with residual slash left on site (‘standard harvest’), and whole-tree harvesting. We also simulated landscapes without wind disturbance and without eastern hemlock (Tsuga canadensis) to examine the effects of detrital quantity and quality on C dynamics. We estimated changes in live C, detrital C, soil organic C, total C, and forest composition. Overall, the simulations without harvesting had substantially greater total C and continued to sequester C. Standard harvest simulations had more C than the whole tree harvest simulations. Under both harvest regimes, C accrual was not evident after 150 years. Without hemlock, SOC was reduced due to a decline in detritus and a shift in detrital chemistry. In conclusion, if the intensity of harvesting increases we can expect a corresponding reduction in potential C storage. Compositional changes due to historic circumstances (loss of hemlock) may also affect forest C although to a lesser degree than harvesting. The modeling approach presented enabled us to consider multiple, interacting drivers of landscape change and the subsequent changes in forest C.     

Predictive distribution modeling for rare Himalayan medicinal plant Berberis aristata DC

Predictive distribution modelling of Berberis aristata DC, a rare threatened plant with high medicinal values has been done with an aim to understand its potential distribution zones in Indian Himalayan region. Bioclimatic and topographic variables were used to develop the distribution model with the help of three different algorithms viz. Genetic Algorithm for Rule-set Production (GARP), Bioclim and Maximum entropy (MaxEnt). Maximum entropy has predicted wider potential distribution (10.36%) compared to GARP (4.63%) and Bioclim (2.44%). Validation confirms that these outputs are comparable to the present distribution pattern of the B. aristata. This exercise highlights that this species favours Western Himalaya. However, GARP and MaxEnt's prediction of Eastern Himalayan states (i. e. Arunachal Pradesh, Nagaland and Manipur) are also identified as potential occurrence places require further exploration.     

Salt stress induced alteration in growth characteristics of a grass Pennisetum alopecuroides

Salinity is one of the major abiotic stresses that adversely affect crop productivity and quality. The present investigation was carried out to study the alterations in the growth characteristics of a grass species, Pennisetum alopecuroides under the influence of sodium chloride (NaCl) salinity. From the results it is clear that shoot length of Pennisetum alopecuroides was increased by 13.17% at 100 mM NaCl concentration while the root length was observed to be increased at 50 mM NaCI concentration by 26.93%.Maximum height of the plant was observed by 18.23% at 50 mM while shoot to root ratio was higher at 300 mM concentrations by 29.17% increase over the control. Moreover, the maximum percent increase in leaf area was recorded as 11.17% (100 mM). Fresh weight was increased by 50.92% at 100 mM while dry weight of the experimental grass was increased by 33.64% at the same concentration of salt to the rooting medium while moisture percentage was increased to a maximum by 24.61% at 50 mM. It appears that the grass species studied exhibit a moderate salinity tolerance as far as linear growth of plant is concerned.     

Knowledge gain and behavioral change in citizen-science programs

Citizen-science programs are often touted as useful for advancing conservation literacy, scientific knowledge, and increasing scientific-reasoning skills among the public. Guidelines for collaboration among scientists and the public are lacking and the extent to which these citizen-science initiatives change behavior is relatively unstudied. Over two years, we studied 82 participants in a three-day program that included education about non-native invasive plants and collection of data on the occurrence of those plants. Volunteers were given background knowledge about invasive plant ecology and trained on a specific protocol for collecting invasive plant data. They then collected data and later gathered as a group to analyze data and discuss responsible environmental behavior with respect to invasive plants. We tested whether participants without experience in plant identification and with little knowledge of invasive plants increased their knowledge of invasive species ecology, participation increased knowledge of scientific methods, and participation affected behavior. Knowledge of invasive plants increased on average 24%, but participation was insufficient to increase understanding of how scientific research is conducted. Participants reported increased ability to recognize invasive plants and increased awareness of effects of invasive plants on the environment, but this translated into little change in behavior regarding invasive plants. Potential conflicts between scientific goals, educational goals, and the motivation of participants must be considered during program design.     

Quantification of polyphenols during retting and characterization of bacteria from the Kadinamkulam Backwaters, Kerala

The retting environment which provides a competitive niche for specialized microbes is speculated to harbour a variety of microbes with high biodegradation potential. In this context, an effort has been made to isolate and identify bacterial species having high tolerance to phenol In vitro. Maximum polyphenol (1.897 mg l(-1)) as observed during the initial period of retting, which decreased as retting proceeded. Based on biochemical characterization, the isolated bacterial strains were identified as Micrococcus sp., Moraxella sp. strain MP1, Moraxella sp. strain MP2 and Moraxella sp. strain MP3, Pseudomonas sp. strain PP1 and Pseudomonas sp. strain PP2, Amphibacillus sp., Brucella sp. strain BP1 and Brucella sp. strain BP2, Aquaspirillum sp., Escherichia coli strain EP1 and Escherichia coli strain EP2, Campylobacter sp., Aeromonas sp., Neisseria sp., Vibrio sp., Erwinia sp. and Mesophilobacter sp. These strains were found to tolerate maximum concentration of phenol viz. 200 to 1000 mg l(-1). Plasmid analysis of phenol resistant bacterial isolates showed that almost all the cultures had at least one plasmid of size > 1Kb. Studies on the protein profile of isolated bacterial cultures showed the presence of proteins with molecular sizes ranging from 10 to 85 KDa with exception of Mesophilobacter and Neisseria having still high molecular weight protein (95 KDa). Bacterial strains isolated from coir-ret-liquor showed tolerance to high phenol concentration.