Estimating the complexity of bird song by using capture-recapture approaches from community ecology

Repertoire size, the number of unique song or syllable types in the repertoire, is a widely used measure of song complexity in birds, but it is difficult to calculate this exactly in species with large repertoires. A new method of repertoire size estimation applies species richness estimation procedures from community ecology, but such capture-recapture approaches have not been much tested. Here, we establish standardized sampling schemes and estimation procedures using capture-recapture models for syllable repertoires from 18 bird species, and suggest how these may be used to tackle problems of repertoire estimation. Different models, with different assumptions regarding the heterogeneity of the use of syllable types, performed best for different species with different song organizations. For most species, models assuming heterogeneous probability of occurrence of syllables (so-called detection probability) were selected due to the presence of both rare and frequent syllables. Capture-recapture estimates of syllable repertoire size from our small sample did not differ significantly from previous estimates using larger samples of count data. However, the enumeration of syllables in 15 songs yielded significantly lower estimates than previous reports. Hence, heterogeneity in detection probability of syllables should be addressed when estimating repertoire size. This is neglected using simple enumeration procedures, but is taken into account when repertoire size is estimated by appropriate capture-recapture models adjusted for species-specific song organization characteristics. We suggest that such approaches, in combination with standardized sampling, should be applied in species with potentially large repertoire size. On the other hand, in species with small repertoire size and homogenous syllable usage, enumerations may be satisfactory. Although researchers often use repertoire size as a measure of song complexity, listeners to songs are unlikely to count entire repertoires and they may rely on other cues, such as syllable detection probability.Communicated by A. Cockburn     

Arsenic in groundwaters of the Lower Mekong

Increasing incidence and awareness of arsenic in many alluvial aquifers of South-east Asia has raised concern over possible arsenic in the Lower Mekong Basin. Here, we have undertaken new research and reviewed many previous small-scale studies to provide a comprehensive overview of the status of arsenic in aquifers of Cambodia and the Cuu Long Delta of Vietnam. In general natural arsenic originates from the Upper Mekong basin, rather than from the local geology, and is widespread in soils at typical concentrations of between 8 and 16 ppm; (dry weight). Industrial and agricultural arsenic is localised and relatively unimportant compared to the natural alluvial arsenic. Aquifers most typically contain groundwaters of no more than 10 μg L⁻¹, although scattered anomalous areas of 10 to 30 μg L⁻¹ are also quite common. The most serious, but possibly ephemeral arsenic anomalies, of up to 600 μg L⁻¹, are associated with iron and organic-rich flood-plain sediments subject to very large flood-related fluctuations in water level, resulting in transient arsenopyrite dissolution under oxidizing conditions. In general, however, high-arsenic groundwaters result from the competing interaction between sorption and dissolution processes, in which arsenic is only released under reducing and slightly alkaline conditions. High arsenic groundwaters are found both in shallow water-tables, and in deeper aquifers of between 100 and 120 m depth. There is no evidence of widespread arsenicosis, but there are serious localised health-hazards, and some risk of low-level arsenic ingestion through indirect pathways, such as through contaminated rice and aquaculture. An almost ubiquitous presence of arsenic in soils, together with the likelihood of greatly increased groundwater extraction in the future, will require continuing caution in water resources development throughout the region.     

Statistical modeling of seasonal and environmental influences on the population dynamics of an estuarine fish community

A statistical modeling study was performed on the population fluctuations of the 15 commonest fish species frequenting the tidal Scheldt estuary in Belgium. These included marine juvenile and seasonal visitors, estuarine residents and diadromous fish species that were recorded on the filter screens of a power plant cooling-water intake between September 1991 and April 2001. The species population abundance was regressed against a candidate set of 6 environmental variables and 13 instrumental variables, accounting for seasonality and long-term trends present in the data. Population abundances of the different species were, in general, best described by seasonal variables. Seasonal components contributed, on average, up to 63.8% of the variance explained by the models. Ten species were found to show a slightly negative, though significant, trend over the period of the survey. Most models also included at least one environmental variable, and 25.4% of the explained variance could be attributed to environmental fluctuations. Of all physico-chemical variables, dissolved oxygen was the most important predictor of fish abundance, suggesting that the estuary suffered from poor water quality during the survey. Temperature, salinity, freshwater flow, suspended solids and chlorophyll a concentrations were minor determinants of fish abundance.Communicated by O. Kinne, Oldendorf/Luhe     

Domoic acid in benthic flatfish on the continental shelf of Monterey Bay,California, USA

Within Monterey Bay, California, USA, the food web transfer of domoic acid (DA), a neurotoxin produced by diatoms of the genus Pseudo-nitzschia, has led to major mortality events of marine mammals and birds. Less visible, and less well known, is whether invertebrates and fish associated with the benthos are also affected by blooms of DA-producing Pseudo-nitzschia spp. This study examines the presence of DA in benthic flatfish offshore of Davenport, California, (37°0′36″N, 122°13′12″W) and within Monterey Bay, California (36°45′0″N, 122°1′48″W), including species that feed primarily in the sediment (benthic-feeding) and species that feed primarily in the water column (benthopelagic-feeding). Flatfish caught between 10 December 2002 and 17 November 2003 at depths of 30–180 m had concentrations of DA in the viscera ranging from 3 to 26 μg DA g⁻¹ of viscera. Although the DA values reported are relatively low, benthic-feeding flatfish were frequently contaminated with DA, especially as compared with the frequency of contamination of flatfish species that feed in the water column. Furthermore, on days in which both benthic-feeding and benthopelagic-feeding flatfish were collected, the former had significantly higher concentrations of DA in the viscera. Curlfin turbot, Pleuronicthys decurrens, the flatfish with both the highest level and frequency of DA contamination, are reported to feed exclusively on polychaetes, suggesting that these invertebrates may be an important vector of the toxin in benthic communities and may pose a risk to other benthic-feeding organisms. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Behaviour and physiology of sockeye salmon homing through coastal waters to a natal river

Adult sockeye salmon (Oncorhynchus nerka, N = 179) from six Fraser River populations (British Columbia) were intercepted in continental shelf waters ∼215 km from the Fraser River mouth, gastrically implanted with acoustic transmitters, non-lethally biopsied for blood biochemistry, gill Na⁺,K⁺-ATPase activity and somatic energy density and then released. Migration behaviour and travel times to the river mouth and into the river were monitored by underwater telemetry receivers positioned at the river mouth and in the river. Post-release survival of salmon was excellent, with 84% (N = 150) of fish reaching the furthest receiving station ∼85 km upriver. Fish from Late-summer run populations (Adams and Weaver Creek) averaged a migration rate of ∼20 km day⁻¹ through the marine area and held at the river mouth and adjacent areas for 7–9 days before entering the river. Summer-run populations (Birkenhead, Chilko, Horsefly and Stellako) had a migration rate ∼33 km day⁻¹ and held for only 1–3 days. Once in river, similar patterns were observed: Late-run populations migrated at ∼28 km day⁻¹ and Summer-run populations at ∼40 km day⁻¹. From point of release to the river mouth, males migrated faster than females, but once in river migration rates did not differ between sexes. Among all females, a correlation was discovered between levels of circulating testosterone and river entry timing. This correlation was not observed among males. Plasma K⁺, Cl⁻, glucose, lactate and osmolality were also correlated with entry timing in both sexes.     

Biomass assessment of estuarine macrophytobenthos using aerial photography

Traditional approaches for biomass assessment of estuarine macrophytes over vast areas are time consuming. A methodology for quick and accurate biomass estimation of macrophytes, growing at intertidal mudflats, has been developed and verified. Using a calculated relation between biomass and colour densities on the aerial photographs, biomass of macrophytes over a large area (ca 900 ha) could be assessed with an accuracy of about 10%. Biomass estimates could be partitioned over seagrasses, various green algae and brown algae.Communication No. 330 Delta Institute for Hydrobiological Research, Yerseke, The Netherlands     

Use of the “Acetylene blockage” technique for assaying denitrification in a salt marsh

The acetylene blockage technique was evaluated for measurement of denitrification in salt-marsh sediments (near Halifax, Nova Scotia, Canada). N₂O in the gas phase of closed Spartina alterniflora marsh-sediment systems was analyzed with use of a thermal conductivity gas chromatograph sensitive to approximately 0.1 nmoles ml^-1 gas. No N₂O was detected for unfertilized sediment samples taken through the growing season and incubated in sealed buckets with 10% C₂H₂. For sediment samples amended with nitrate and for enrichments, initial rates of N₂O evolution were higher in the presence of 10% C₂H₂ than in the absence of C₂H₂, but after longterm incubation N₂O was consumed in some samples containing C₂H₂ as well as in samples without C₂H₂. In addition, total gaseous nitrogen (N₂ and N₂O) production in the absence of C₂H₂ was higher than in the presence of C₂H₂. Acetylene appears to be an inconsistent inhibitor of N₂O reduction in salt-marsh sediments. The usefulness of the acetylene-denitrification technique in this habitat is, therefore, questionable.     

Using the expert model PERPEST to translate measured and predicted pesticide exposure data into ecological risks

An important topic in the registration of pesticides and the interpretation of monitoring data is the estimation of the consequences of a certain concentration of a pesticide for the ecology of aquatic ecosystems. Solving these problems requires predictions of the expected response of the ecosystem to chemical stress. Up until now, a dominant approach to come up with such a prediction is the use of simulation models or safety factors. The disadvantage of the use of safety factors is a crude method that does not provide any insight into the concentration–response relationships at the ecosystem level. On the other hand, simulation models also have serious drawbacks like that they are often very complex, lack transparency, their implementation is expensive and there may be a compilation of errors, due to uncertainties in parameters and processes. In this paper, we present the expert model prediction of the ecological risks of pesticides (PERPEST) that overcomes these problems. It predicts the effects of a given concentration of a pesticide based on the outcome of already performed experiments using experimental ecosystems. This has the great advantage that the outcome is more realistic. The paper especially discusses how this model can be used to translate measured and predicted concentrations of pesticides into ecological risks, by taking data on measured and predicted concentrations of atrazine as an example. It is argued that this model can be of great use to evaluate the outcome of chemical monitoring programmes (e.g. performed in the light of the Water Framework Directive) and can even be used to evaluate the effects of mixtures.     

Preponderance of a few diatom species among the highly diverse microphytoplankton assemblages in the Bay of Bengal

The microphytoplankton assemblages were studied from water samples collected at eight discrete depths in the top 120 m at five central (open ocean) and four western (shelf/slope region) locations in the Bay of Bengal. The Bay is a low-productive warm pool regime with poor inorganic nutrient inputs to its intensely stratified surface layer despite the very large riverine influx. In addition, the prolonged cloud cover has an adverse effect on the top 25–40 m, on primary production, chlorophyll concentration and phytoplankton assemblages. Microphytoplankton were the most abundant in the northern area of the Bay. A total of 153 phytoplankton species were identified during this study. The most abundant species (at least 1,800 individual cells belonging to a given species or ≥2% of the total counts of identified specimens) during this study were: Thalassiothrix longissima, Thalassiothrix fauenfeldii, Rhizosolenia styliformis, Nitzschia angularis, Thalassionema nitzschioides, Coscinodiscus radiatus, Chaetoceros eibenii, Skeletonema costatum, Coscinodiscus concinnus and Chaetoceros coarctatus. Similarly, there were 20 moderately abundant (≥0.5 but <2%) species. Thirty-three of the least abundant species (<0.5%) occurred at one station. Diatom species, T. fauenfeldii and T. longissima were ubiquitous in the study area. The exclusive occurrence of S. costatum in the northernmost stations suggests that it proliferates only in the low-salinity regions with adequate silica from the land inputs. Abundance of pennate diatoms was higher in the open Bay compared to that of centric diatoms in the more productive northern locations and the western Bay. There appears to be a basic difference between near shore flora and offshore flora. This first analysis of phytoplankton assemblages from the offshore Bay suggests that while there is predominance of only a few species, the Bay harbors very diverse diatom communities that seem to be syntrophic, non-competitive and co-habiting in the generally low nutrient, stratified surface waters.     

Early prenatal diagnosis of congenital hypophosphatasia: Case report

Congenital hypophosphatasia is an autosomal recessive disorder, which usually has a fatal outcome during the neonatal period. This report presents the prenatal diagnosis of hypophosphatasia at 16 weeks of gestation. The characteristic ultrasonic findings in this abnormality demonstrate the superiority of ultrasound as compared with radiography.