Bayesian nonparametric inference for the overlap of daily animal activity patterns

The study of the interaction among species is an active area of research in Ecology. In particular, it is of interest to evaluate the overlap of their ecological niches. Temporal activity is one of the niche’s axes most commonly used to explore ecological segregation among animal species, and many contributions focus on the overlap of this variable. Once the information of the temporal activity is obtained in the wild, the data is treated as a random sample. There exist different methods to estimate the overlap. Specifically, in the case of two species, one possibility is to estimate the density of the temporal activity of each species and then evaluate the overlap between these density functions. This leads naturally to the analysis of circular data. Most of the procedures currently in use impose some rather restrictive assumptions on the probabilistic models used to describe the phenomena, and only provide approximate measures of the uncertainty involved in the process. In this article, we propose a Bayesian nonparametric approach which incorporates a well-defined noninformative prior. We take advantage of the data structure to define such a prior in terms of the predictive distribution. To the best of our knowledge, this is a novel approach. Our procedure is compared with a well-known method using simulated data, and applied to the analysis of real camera-trap data concerning two mammalian species from the El Triunfo biosphere reserve (Chiapas, Mexico).     

OECD 236的鱼类胚胎实验(Fish Embryo Test, FET)是否足够敏感，能有效进行排水风险评价吗？

近年来,由于“动物友好”协议的广泛应用,鱼类胚胎实验(Fish Embryo Test, FET)成为了生态毒理学研究的主要方法。OECD 236 FET方法在REACH法规所辖范围内广泛应用,主要针对简单混合物暴露情况(simple mixture exposures),但其还在世界范围内被盲目地用于排放废水综合测试(Whole Effluent Test, WET),这是一种复杂混合物暴露情况。然而,评价FET方法用于WET的有效性的可靠数据几乎没有。本文将OECD 236 FET方法与其他国际通用的标准的和略作改进的生态毒理学研究方案进行了比较,得出了可用于WET的测试方法的总体评价结果。我们使用了未经处理的医院排水,通常认为该排水具有高毒性,且会进入市政污水处理系统。我们选择的毒性测试方法包括OECD 203 (juvenile), USEPA 2000.0 (larva) and OECD 236 (embryo)。值得一提的是,我们还额外测试了3个亚致死指标(不移动性、不孵化率、心包囊肿),这些指标可以提高OECD 236方法的敏感性。我们在所选的8种方法中考察了急性毒性数据,方法的敏感性均有提高且胚胎实验≤仔鱼实验<幼鱼实验(Embryo≤Juvenile 详情请见 https://doi.org/10.1002/etc.4215
     

Hydrogeochemical considerations about the origin of groundwater salinization in some coastal plains of Elba Island (Tuscany,Italy)

Several coastal plains of the Elba Island (Marina di Campo, Portoferraio, Schiopparello, Mola, Porto Azzurro and Barbarossa plains) in Tuscany (Italy) were studied to determine the causes of decline in groundwater quality, using major ion chemistry to establish the causes of groundwater salinization. The study demonstrates that salinization of coastal plain alluvial aquifers is not simply linked to seawater intrusion but is also intimately related to inflows from adjacent aquifers. Ionic ratios, correlation graphs and distribution value maps were employed as the means to understand the hydrochemistry of the study areas. The Mg/Cl ratio in particular can be considered a good tracer to distinguish the main salinization processes that control groundwater chemistry. Seawater intrusion only partly determines the chemistry of some groundwaters, which generally belong to a chloride facies where the salinity is derived principally from freshwater–seawater mixing and the participation of cation exchange. Proceeding inland groundwater quality seems to be principally determined by the inflow of Mg, Ca-HCO₃ or Ca, Na-HCO₃ waters formed from the weathering of silicate minerals in adjoining aquifers. Hydrolysis of these minerals is of prime importance in controlling groundwater chemistry in adjacent alluvial plains. The lateral recharge flows introduce water with a different chemical composition and this variable of freshwater recharge changes the hydrochemistry as a result of mixing between two or more waters types. This situation is further complicated when seawater and base exchange reactions participate, due to seawater intrusion.     

A three-isotope approach to disentangling the diet of a generalist consumer: the yellow-legged gull in northwest Spain

The widespread omnivory of consumers and the trophic complexity of marine ecosystems make it difficult to infer the feeding ecology of species. The use of stable isotopic analysis plays a crucial role in elucidating trophic interactions. Here we analysed δ¹⁵N, δ¹³C and δ³⁴S in chick feathers, and we used a Bayesian triple-isotope mixing model to reconstruct the diet of a generalist predator, the yellow-legged gull (Larus michahellis) that breeds in the coastal upwelling area off northwest mainland Spain. The mixing model indicated that although chicks from all colonies were fed with a high percentage of fish, there are geographical differences in their diets. While chicks from northern colonies consume higher percentages of earthworms, refuse constitutes a more important source in the diet of chicks from western colonies. The three-isotope mixing model revealed a heterogeneity in foraging habitats that would not have been apparent if only two stable isotopes had been analysed. Moreover, our work highlights the potential of adding δ³⁴S for distinguishing not only between terrestrial and marine prey, but also between different marine species such as fish, crabs and mussels.     

Assessment of a large watershed in Brazil using Emergy Evaluation and Geographical Information System

Humanity's future depends on the preservation of natural ecosystems that supply resources and absorb pollutants. Rural and urban productions are currently based on chemical products made from petroleum, which are responsible for high negative impacts on the Biosphere. In order to prevent those impacts, efficient public policies seeking for sustainable development are necessary. Aiming to assess the load on the environment (considering the gratuitous contributions of natural systems—a donor's perspective) due to human-dominated process, a scientific tool called Emergy Evaluation has been applied in different production systems, including crops and farms. However, there is still a lack of emergy studies in the context of watersheds, probably due to the difficulty of collecting raw data. The present work aims to carry out an assessment of Mogi-Guaçu and Pardo watershed, through the combined use of Emergy Evaluation and Geographical Information System. The agricultural and natural land uses were considered, while urban areas were excluded. Emergy flows (expressed in seJ ha⁻¹ yr⁻¹) obtained for all agricultural and natural land uses were expanded for the whole watershed and the emergy indices were calculated. The results show that the watershed has: low renewability (%R = 32%); low capture of natural resources through high external economic investment (EYR = 1.86); low dependence on natural resources (EIR = 1.16); and moderate load on the environment (ELR = 2.08). Considering a scenario where sugar-cane crops, orchards and pasture areas are converted from conventional to organic management, watershed's emergy performance improved, reaching a new renewability of 38%, but it is still not enough to be considered sustainable.     

Age effect on the antioxidant activity of Daphnia magna (Anomopoda: Daphniidae): does younger mean more sensitivity?

It has been accepted that for most species newborns and senescent organisms are more sensitive than other ages to environmental stressors. Nevertheless, it must be considered that there are several biochemical and physiological compensatory processes which are not expressed with the same magnitude during the whole life cycle. With this aim, Daphnia magna individuals of different age were exposed to hexavalent chromium, Cr (VI), at two different sublethal concentrations (0.032 and 0.0064 mg l(-1)), and the activity of some antioxidant enzymes such as catalase (CAT), superoxide dismutase (SOD), glutathione reductase (GR) and glutathione peroxidase (GPx) were evaluated during most of the life cycle of this cladoceran. The antioxidant enzymatic activity showed an inverse relationship with respect to age. The activity of CAT, GR and GPx were increased in the two treated groups, at all life stages tested. On the other hand, the activity of SOD decreased in the same groups. Both, increase and decrease in the antioxidant enzymatic activities, showed significant differences with respect to the control group, being higher for the 0.032 mg l(-1) group. The Cr (VI) LC50 was also estimated for these age groups, finding statistical differences among them. Even though adults exhibited higher responses, these enzymatic activity changes should not be interpreted as higher sensitivity, since the daphnids acute chromium toxicity followed a different pattern, with increasing LC50 values according to age.     

Biliverdin-based egg coloration is enhanced by carotenoid supplementation

Avian eggshell color is remarkably variable among and within species and its possible function has long been controversial. Female birds use biliverdin pigment to color their eggs blue and green. Although evidence is accumulating that blue-green eggshell coloration is costly to produce, the exact mechanisms underlying its expression are little studied. Biliverdin pigment is involved in important maintenance functions such as immune and antioxidant defenses and shows similar properties to carotenoid pigments. Carotenoids play a role as immunoenhancers and have the potential to ameliorate the impact of oxidative processes, although their antioxidant function could be minor for some bird species. Important life-history components can be limited by carotenoid availability, including sexual displays and fecundity. Here we explored if biliverdin-based eggshell pigmentation was affected by carotenoid availability in a seabird, by performing a carotenoid supplementation experiment in female blue-footed boobies (Sula nebouxii) after laying their first egg. In this species, blue eggshell color is associated with incubation patterns, and carotenoid availability affects the crucial trade-off between female foot ornamentation and fecundity. We found that under natural conditions, there was a decline in eggshell color with laying order, suggesting pigment limitation for females. However, carotenoid-supplemented females had enhanced second egg coloration compared to controls, and the color increase was independent of their previous pigment allocation to the first egg. Our results suggest that biliverdin-based eggshell coloration is costly to produce and can be alleviated by current carotenoid availability.     

Life-history and demographic spatial variation in Mediterranean populations of the opportunistic polychaete <Emphasis Type="Italic">Ophryotrocha labronica</Emphasis> (Polychaeta,Dorvilleidae)

The spatial scale of life-history and demographic variation was investigated in the opportunistic polychaete Ophryotrocha labronica La Greca and Bacci. Individuals were collected along the Italian coasts from three thermally different biogeographical regions of the Mediterranean Sea. For each region, populations from four harbours were considered, and for each harbour, two sites were examined. Life-history and demographic traits were investigated after one generation under a common garden experiment, and their variation at the three spatial scales was assessed. All the traits showed high variability with regard to site. A number of life-history and all demographic traits also varied according to the biogeographical region. Conversely, no differences were found between harbours, suggesting that geographical isolation did not contribute to phenotypic variation. Results confirmed the central role of local conditions for the evolution of life history in species colonizing heterogeneous environments, but they also pointed to the importance of large-scale factors in shaping the phenotypic responses of O. labronica, demonstrating the need for a multi-scale approach for obtaining a good measure of natural variation in widespread opportunistic species.     

Predator–prey models: an application for the plankton dynamics of lake Geneva

In this paper we present a hierarchical Bayesian analysis for a predator–prey model applied to ecology considering the use of Markov Chain Monte Carlo methods. We consider the introduction of a random effect in the model and the presence of a covariate vector. An application to ecology is considered using a data set related to the plankton dynamics of lake Geneva for the year 1990. We also discuss some aspects of discrimination of the proposed models.     

Modulation of attention and urgent decisions by affect-laden roadside advertisement in risky driving scenarios

In road safety literature the effects of emotional content and salience of advertising billboards have been scarcely investigated. The main aim of this work was to uncover how affect-laden roadside advertisements can affect attention – eye-movements – and subsequent risky decisions – braking – on the Honda Riding Trainer motorcycle simulator. Results indicated that the number of fixations and total fixation time elicited by the negative and positive emotional advertisements were larger than the neutral ones. At the same time, negative pictures got later gaze disengagement than positive and neutral ones. This attentional capture results in less eye fixation times on the road relevant region, where the important driving events happen. Finally, the negative emotional valence advertisements sped up braking on subsequent risky situations. Overall results demonstrated how advertisements with emotional content modulate attention allocation and driving decisions in risky situations and might be helpful for designing roadside advertisements regulations and risk prevention programs.