Population structure of <Emphasis Type="Italic">Symbiodinium</Emphasis> sp. associated with the common sea fan, <Emphasis Type="Italic">Gorgonia ventalina</Emphasis>, in the Florida Keys across distance,depth, and time

Numerous marine invertebrates form endosymbiotic relationships with dinoflagellates in the genus Symbiodinium. However, few studies have examined the fine-scale population structure of these symbionts. Here, we describe the genetic structure of Symbiodinium type “B1/B184” inhabiting the gorgonian Gorgonia ventalina along the Florida Keys. Six polymorphic microsatellite loci were utilized to examine 16 populations along the Upper, Middle, and Lower Keys spanning a range of ~200 km. Multiple statistical tests detected significant differentiation in 54–92% of the 120 possible pairwise comparisons between localities, suggesting low levels of gene flow in these dinoflagellates. In general, populations clustered by geographic region and/or reefs in close proximity. Some of the sharpest population differentiation was detected between Symbiodinium from deep and shallow sites on the same reef. In spite of the high degree of population structure, alleles and genotypes were shared among localities, indicating some connectivity between Symbiodinium populations associated with G. ventalina. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The invisibility of fisheries in the process of hydropower development across the Amazon

We analyze the invisibility of fisheries and inadequacy of fishers’ participation in the process of hydropower development in the Amazon, focusing on gaps between legally mandated and actual outcomes. Using Ostrom’s institutional design principles for assessing common-pool resource management, we selected five case studies from Brazilian Amazonian watersheds to conduct an exploratory comparative case-study analysis. We identify similar problems across basins, including deficiencies in the dam licensing process; critical data gaps; inadequate stakeholder participation; violation of human rights; neglect of fishers’ knowledge; lack of organization and representation by fishers’ groups; and lack of governmental structure and capacity to manage dam construction activities or support fishers after dam construction. Fishers have generally been marginalized or excluded from decision-making regarding planning, construction, mitigation, compensation, and monitoring of the social–ecological impacts of hydroelectric dams. Addressing these deficiencies will require concerted investments and efforts by dam developers, government agencies and civil society, and the promotion of inter-sectorial dialogue and cross-scale participatory planning and decision-making that includes fishers and their associations.     

Lagrangian sampling of 3-D air quality model results for regional transport contributions to sulfate aerosol concentrations at Baltimore,MD, in summer 2004

We use ensemble-mean Lagrangian sampling of a 3-D Eulerian air quality model, CMAQ, together with ground-based ambient monitors data from several air monitoring networks and satellite (MODIS) observations to provide source apportionment and regional transport vs. local contributions to sulfate aerosol and PM_2.5 concentrations at Baltimore, MD, for summer 2004. The Lagrangian method provides estimates of the chemical and physical evolution of air arriving in the daytime boundary layer at Baltimore. Study results indicate a dominant role for regional transport contributions on those days when sulfate air pollution is highest in Baltimore, with a principal transport pathway from the Ohio River Valley (ORV) through southern Pennsylvania and Maryland, consistent with earlier studies. Thus, reductions in sulfur emissions from the ORV under the EPA's Clean Air Interstate Rule may be expected to improve particulate air quality in Baltimore during summer. The Lagrangian sampling of CMAQ offers an inexpensive and complimentary approach to traditional methods of source apportionment based on multivariate observational data analysis, and air quality model emissions separation. This study serves as a prototype for the method applied to Baltimore. EPA is establishing a system to allow air quality planners to readily produce and access equivalent results for locations of their choice.     

Oxygen depletion in relation to water residence times

The relationship between residence time and oxygen saturation was investigated in a mesotidal lagoon in southern Portugal. The system receives no significant freshwater input during the summer months and has a high evaporation rate. These features enable an estimate of residence time from the salinity differences between ocean water entering the system and lagoon water. More than 10,000 GPS referenced measurements of oxygen saturation, temperature and salinity were made during large spring tides in September, 2006. The lowest oxygen saturation ( approximately 44%) was measured in the waters with the highest calculated residence times (7 days). There was a significant linear decrease in the oxygen saturation with increasing residence time of approximately 16% per day. This was similar to the rate measured on a neap tide in August, 2005. The high salinity, low oxygen saturated water was spatially confined to one inner channel, except at high water when this water was pushed into other channels. Although the tides investigated were the largest for several years, the oxygen saturation did not exceed 70% in this inner region. It is proposed that the direct discharge of oxygen consuming effluent, including domestic sewage, into this inner channel is responsible for this persistent oxygen deficit.     

Trialling a web-based spatial information management tool with Land Managers in Victoria,Australia

A prototype web-based spatial information management tool (called eFarmer) was tested for its useability and usefulness by 46 Land Managers and 5 extension staff in Victoria, Australia. Participants had a range of enterprises (dairy, beef/sheep grazing, cropping, lifestyle land use), property sizes and computer ownership and expertise. A follow up study was conducted with 12 dairy farmers, where features regarding assessment of nutrient losses from paddocks (Farm Nutrient Loss Index, FNLI) were added to eFarmer. Over 27,000 maps (including 11,000 with aerial photography) were accessed by Land Managers during a 5-month trial period. Despite limited training and support, 1350 people are registered users, and approximately 700 have actively used the tool. Reasons for the success include providing improved access to spatial information, enabling measurement of farm features and creation of farm maps, providing a basis for decision-making about farm inputs, support for better farm and landscape scale action planning and production and Land Managers being able to seek management advice from the extension staff who facilitated eFarmer testing programs. For dairy farmers in the FNLI trial, awareness of off-site impacts increased and most changed management practices. Provision of on-going training and support will be at least as important as further development of the tool itself. Web-based spatial information tools have potential to improve the awareness of Land Managers about their environmental impacts and influence their decision-making. Access to spatial information has potential to reduce information asymmetry between Land Managers, extension staff and catchment planners in a constructive way. It will also change the role of extension staff away from being an expert with answers, to a facilitator enabling learning. Results have applicability in countries where there is a high level of farm computer ownership, relevant spatial information is available in GIS format, where governments are happy to make spatial information available to the public and there is pressure for increased environmental awareness and improved decision making by Land Managers.     

Ecological tracers and at-sea observations document the foraging ecology of southern long-finned pilot whales (<Emphasis Type="Italic">Globicephala melas edwardii</Emphasis>) in Kerguelen waters

The food and feeding ecology of the poorly known southern long-finned pilot whale (Globicephala melas edwardii) was investigated using ecological tracers (muscle and skin δ¹³C and δ¹⁵N, and total mercury, Hg) on individuals from two mass strandings together with at-sea observations of live animals in Kerguelen waters, southern Indian Ocean. Sightings of cetaceans from longliners over 9 years (2003–2012) emphasized the regular occurrence of pilot whales in slope waters surrounding the archipelago. Tissue δ¹³C values (a proxy of consumer foraging habitat) suggest that pilot whales fed in slope waters and in oceanic subantarctic waters over the last months preceding stranding. Tissue δ¹⁵N values and Hg concentration (dietary proxies) indicate a high trophic position (~4.7) for the pilot whales, likely corresponding to a mixed diet of fish and squid (not crustaceans) of undetermined species. Both skin and muscle Hg concentrations were positively and linearly correlated to individual size with no concomitant δ¹⁵N changes, which can be interpreted as a progressive Hg accumulation in tissues of individuals throughout life with no parallel dietary shift. Skin and muscle Hg concentrations were linearly and positively related; hence, Hg skin could be used as a proxy of Hg concentration in muscle (a main Hg reservoir of the body). Kerguelen southern long-finned pilot whales were less Hg contaminated than most pilot whale populations studied so far, thus suggesting that they are not at a high risk to Hg-induced damages in the remote islands of the Southern Ocean.     

Numerical modeling of aquaculture dissolved waste transport in a coastal embayment

Marine aquaculture is expanding rapidly without reliable quantification of effluents. The present study focuses on understanding the transport of dissolved wastes from aquaculture pens in near-coastal environments using the hydrodynamics code SUNTANS (Stanford Unstructured Nonhydrostatic Terrain-following Adaptive Navier–Stokes Simulator), which employs unstructured grids to compute flows in the coastal ocean at very high resolution. Simulations of a pollutant concentration field (in time and space) as a function of the local environment (bathymetry), flow conditions (tides and wind-induced currents), and the location of the pens were performed to study their effects on the evolution of the waste plume. The presence of the fish farm pens cause partial blockage of the flow, leading to the deceleration of the approaching flow and formation of downstream wakes. Results of both the near-field area (area within 10 to 20 pen diameters of the fish-pen site) as well as far-field behavior of the pollutant field are presented. These detailed results highlight for the first time the importance of the wake vortex dynamics on the evolution of the near-field plume as well as the rotation of the earth on the far-field plume. The results provide an understanding of the impact of aquaculture fish-pens on coastal water quality.     

Integrated Crop–livestock Management Systems in Sub-saharan Africa

This paper outlines the advantages of integrated crop–livestock systems and unsolved problems that need to be studied further. The discussion is subdivided by ecozone with consideration of arid and dry semi-arid areas with extensive livestock management; moist semi-arid and semi-humid areas where integrated crop–livestock systems are common; and humid areas where swine and poultry often predominate. To maintain soil organic matter in all ecozones, efficient recovery and use of nutrients from animal manures, crop residues and green manures is essential. In extensive systems in dry zones, animals transport nutrients from grazing areas to cropland, while in moister regions that are more intensively farmed, the emphasis is on the efficiency of nutrient recovery. Specific research questions relating to the overall ecosystem, nutrient cycling, plants, and animals are posed.     

Fractionation of rare earth and other trace elements in crabs, Ucides cordatus, from a subtropical mangrove affected by fertilizer industry

Fractionation of rare earth elements (REE) and other trace metal concentrations (Th, U, Cd, Cr, Cu, Ni, Pb, and Zn) between mangrove sediments and claw muscles and shells of male crabs (Ucides cordatus) from a subtropical estuary highly impacted by fertilizer industry activities was investigated. This is the first record of REE distribution in these organisms, and the results showed higher accumulations of these metals, U and Th in shells, probably related to the replacement of Ca during molting. Contents of Cd, Cr and Ni were similar in both tissues, but Cu, Zn and Pb were mostly accumulated in the claw muscle with concentrations above those considered safe for human consumption according to the Brazilian legislation. REE fractionation was different in the analyzed tissues being softer in the shells. The results provided evidences that the water absorbed during molting controls the chemistry of REE in shells. In contrast, the chemistry of REE in the claw muscle, in which was observed preferential absorption of light REE, is controlled by diet. REE fractionation obtained for the claw muscles was closely correlated to the observed in the contaminated substrate and in materials related to the production of phosphate fertilizers (contamination source), which supports their transference to this Ucides cordatus tissue without fractionation by the ingestion of sediments. Our results showed the potential use of crab tissues for monitoring REE and trace element sources in mangrove areas, with claw muscle exhibiting the contaminant source fingerprint.