Recommended pre-test counseling points for noninvasive prenatal testing using cell-free DNA: a 2015 perspective

Noninvasive prenatal testing (NIPT) using cell-free DNA is being offered to an increasing number of women. Comprehensive pre-test counseling is complicated by emerging information about the benefits and limitations of testing, as well as the potential to detect incidental findings. Genetic counselors are trained to facilitate informed decision-making; however, not all centers have access to these professionals. To aid in the informed consent process, we have summarized key points to be included in discussions with patients who are considering NIPT. © 2015 John Wiley & Sons, Ltd.     

A dispersal-constrained habitat suitability model for predicting invasion of alpine vegetation

Developing tools to predict the location of new biological invasions is essential if exotic species are to be controlled before they become widespread. Currently, alpine areas in Australia are largely free of exotic plant species but face increasing pressure from invasive species due to global warming and intensified human use. To predict the potential spread of highly invasive orange hawkweed (Hieracium aurantiacum) from existing founder populations on the Bogong High Plains in southern Australia, we developed an expert-based, spatially explicit, dispersal-constrained, habitat suitability model. The model combines a habitat suitability index, developed from disturbance, site wetness, and vegetation community parameters, with a phenomenological dispersal kernel that uses wind direction and observed dispersal distances. After generating risk maps that defined the relative suitability of H. aurantiacum establishment across the study area, we intensively searched several locations to evaluate the model. The highest relative suitability for H. aurantiacum establishment was southeast from the initial infestations. Native tussock grasslands and disturbed areas had high suitability for H. aurantiacum establishment. Extensive field searches failed to detect new populations. Time-step evaluation using the location of populations known in 1998-2000, accurately assigned high relative suitability for locations where H. aurantiacum had established post-2003 (AUC [area under curve] = 0.855 +/- 0.035). This suggests our model has good predictive power and will improve the ability to detect populations and prioritize areas for ongoing monitoring.     

Bioremediation of a former dry cleaner using potassium lactate

Chlorinated solvents were released to the surficial groundwater underneath a former dry cleaning building, resulting in a groundwater plume consisting of high concentrations of trichloroethene (TCE) and cis‐1,2‐dichloroethene (cis‐1,2‐DCE) and low concentrations of tetrachloroethene (PCE) and vinyl chloride. The initial remedial action included chemical oxidation via injection of 14,400 gallons of Fenton's Reagent in March 2002, and an additional 14,760 gallons in April 2002. A sharp reduction of contaminant concentrations in groundwater was observed the following month; however, rebound of contaminant concentrations was evident as early as October 2002. A source area of PCE‐impacted soils was excavated in June 2004. Following the excavation, Golder Associates Inc. (2007) implemented a biostimulation plan by injecting 55 gallons of potassium lactate (PURASAL® HiPure P) in September 2005, and again in February 2006. Comparing the preinjection and postinjection site conditions, the potassium lactate treatments were successful in accomplishing a 40 to 70 percent reduction in mass within four months following the second injection. Elevated vinyl chloride concentrations have persisted through both injection events; however, significant vinyl chloride reduction has been observed in one well with the highest total organic carbon (TOC) concentrations following each injection. © 2008 Wiley Periodicals, Inc.     

What makes a honeybee scout?

A honeybee colony needs to divide its workforce so that each of the many tasks it performs has an appropriate number of workers assigned to it. This task allocation system needs to be flexible enough to allow the colony to quickly adapt to an ever-changing environment. In this study, we examined possible mechanisms by which a honeybee colony regulates the division of labor between scouts (foragers that search for new food sources without having been guided to them) and recruits (foragers that were guided via recruitment dances toward food sources). Specifically, we examined the roles that the availability of recruitment dances and worker genotype has in the colony-level regulation of the number of workers engaged in scouting. Our approach was threefold. We first developed a mathematical model to demonstrate that the decision to become a scout or a recruit could be regulated by whether a potential forager can find a recruitment dance within a certain time period. We then tested this model by investigating the effect of dance availability on the regulation of scouts in the field. Lastly, we investigated if the probability of being a scout has a genetic basis. Our field data supported the hypothesis that scouts are those foragers that have failed to locate a recruitment dance as predicted by our model, but we found no effect of genotype on the propensity of foragers to become scouts.     

Anaerobic biodegradation of methyl tert-butyl ether under iron-reducing conditions in batch and continuous-flow cultures.

The feasibility of biodegradation of the fuel oxygenate methyl tert-butyl ether (MTBE) under iron-reducing conditions was explored in batch and continuous-flow systems. A porous pot completely-mixed reactor was seeded with diverse cultures and operated under iron-reducing conditions. For batch studies, culture from the reactor was transferred anaerobically to serum bottles containing either MTBE alone or MTBE with ethanol (EtOH) and excess electron acceptor. In the continuous-flow reactor, MTBE conversion to tert-butyl alcohol (TBA) was observed after 181 days of operation, and stable removal was achieved throughout the remainder of the study. Simultaneously, both the MTBE only and the MTBE and EtOH iron-reducing batch serum bottles also began to degrade MTBE. Bottles were respiked and the degradation rate was determined to be 2.36 +/- 0.10 x 10(-4) mmol MTBE/min-kgVSS. The EtOH present with MTBE degraded faster (7.76 +/- 0.08 x 10(-3) mmol EtOH/min-kg VSS) but did not have a noticeable effect on the rate of MTBE degradation. No evidence of TBA degradation was observed by the iron-reducing cultures. Stoichiometry of iron utilization was determined from the iron balance of the continuous-flow reactor, and it was found that the bulk of the electron acceptor was required for energy and maintenance with little remaining for cell synthesis. This is consistent with a yield coefficient of less than 0.1. Molecular analysis of the iron-reducing culture by denaturing gradient gel electrophoresis indicated that uncultured strains of delta-Proteobacteria were dominant in the reactor.