Fourth-corner correlation is a score test statistic in a log-linear trait–environment model that is useful in permutation testing

Ecologists wish to understand the role of traits of species in determining where each species occurs in the environment. For this, they wish to detect associations between species traits and environmental variables from three data tables, species count data from sites with associated environmental data and species trait data from data bases. These three tables leave a missing part, the fourth-corner. The fourth-corner correlations between quantitative traits and environmental variables, heuristically proposed 20 years ago, fill this corner. Generalized linear (mixed) models have been proposed more recently as a model-based alternative. This paper shows that the squared fourth-corner correlation times the total count is precisely the score test statistic for testing the linear-by-linear interaction in a Poisson log-linear model that also contains species and sites as main effects. For multiple traits and environmental variables, the score test statistic is proportional to the total inertia of a doubly constrained correspondence analysis. When the count data are over-dispersed compared to the Poisson or when there are other deviations from the model such as unobserved traits or environmental variables that interact with the observed ones, the score test statistic does not have the usual chi-square distribution. For these types of deviations, row- and column-based permutation methods (and their sequential combination) are proposed to control the type I error without undue loss of power (unless no deviation is present), as illustrated in a small simulation study. The issues for valid statistical testing are illustrated using the well-known Dutch Dune Meadow data set.     

A graphical assessment and spatial clustering of the Deepwater Horizon oil spill impact on Laughing Gulls

The Deepwater Horizon oil spill occurred in the Gulf of Mexico on April 20, 2010. Considered the largest accidental marine oil spill in history, oil flowed for three months and approximately five million barrels of oil spilled through by mid-July 2010. In this article, we analyze bird data to assess the impact of the oil spill on the Gulf wildlife. Particularly, we want to determine in which regions Laughing Gulls were mostly affected by the oil spill, and whether those regions spatially shifted throughout the year 2010. Though our data sets have some limitations to apply statistical analysis methods, we obtained very interesting results. Our analyses showed the general consistency of the results based on two population data sets (from the 2011 Data Expo and from the eBird community) and justified the use of both publicly available data sets. We showed that the closer the surface oil spill area approached to the Laughing Gulls habitats, the more significant clusters of bird cases were observed.     

2D brine sewage after impinging on a shallow sea free surface

We consider the problem of the vertically upwards disposal of heavy brine sewage from a two-dimensional diffuser in a lighter, homogeneous, motionless and shallow ambient sea. The rejected high salinity water of seawater desalination plants for urban and agricultural uses is such a case of a two dimensional fountain. The disposal of brine sewage produces a negative buoyant jet due to its initial momentum, which impinges on the free surface, spreads laterally on it and then sinks downwards, because of the negative buoyancy. Laboratory experiments and dimensional considerations are used in this paper in order to investigate the spreading behavior (width) of the vertical fountain which impinges on the free surface of the shallow ambient fluid. The experimental results have been used to derive an equation relating the width at the free surface with the initial parameters of the flow. In addition, the experimentally measured dilution of the heavier brine sewage on the recipient’s surface is compared with the dilution which was calculated by a numerical simulation of a well-known commercial software package, CORJET (a CORMIX sub model).     

Direct measurements of the drag force over aligned arrays of cubes exposed to boundary-layer flows

Wind tunnel measurements of the total drag force for aligned arrays of cubes exposed to two different boundary-layer flows at three flow velocities are discussed. The drag force for eight different building packing densities λ _p (from 0.028 to 1) is measured with a standard load cell generating a novel dataset. Different λ _p are reproduced by increasing the number of buildings on the same lot area; this represents a real situation that an urban planner is faced with when a lot area of a given (fixed) size is allocated to the development of new built areas. It is assumed that the surrounding terrain is uniform and there is a transition from a given roughness (smooth) to a new roughness (rough). The approaching flow will adjust itself over the new surface within a distance that in general may be larger than the horizontal length covered by the array. We investigate the region where the flow adjustment occurs. The wide range of packing densities allowed us to analyse in detail the evolution of the drag force. The drag force increases with increasing packing densities until it reaches a maximum at an intermediate packing density (λ _p  = 0.25 in our case) followed by a slight decrease at larger packing densities. The value of the drag force depends on the flow adjustment along the array which is evaluated by introducing the parameter “drag area” to retrieve information about the drag distribution at different λ _p . Results clearly suggest a change of the distribution of the drag force, which is found to be relatively uniform at low packing densities, while most of the force acts on first rows of the arrays at large packing densities. The drag area constitutes the basis for the formulation of a new adjustment length scale defined as the ratio between the volume of the air within the array and the drag area. The proposed adjustment length scale automatically takes into account the change in drag distribution along the array for a better parameterization of urban effects in dispersion models.     

Comparison of analytical descriptions of nocturnal low-level jets within the Ekman model framework

This study focuses on the inertial oscillation aspect of the nocturnal low-level jet (NLLJ). In the context of the Ekman model solutions, conceptual NLLJ inertial oscillation analytical frameworks proposed by Blackadar in 1957 and Shapiro and Fedorovich and van de Wiel et al. in 2010 are compared. Considering a NLLJ produced via direct numerical simulation over flat terrain with no baroclinic influence as a reference case, the deficiencies of each framework in representing a realistic NLLJ are assessed. The Blackadar theory results in unrealistic wind profiles near the surface. While extensions of Blackadar’s framework by Shapiro and Fedorovich and van de Wiel et al. produce more realistic NLLJs, the simpler approach taken by van de Wiel et al. does not describe the NLLJ wind hodograph at later times sufficiently in qualitative terms.     

Mechanism of the intermittent motion of two-phase debris flows

A typical two-phase debris flow exhibits a high and steep flow head consisting of rolling boulders and cobbles with intermittent or fluctuating velocity. The relative motion between the solid phase and the liquid phase is obvious. The motion of a two-phase debris flow depends not only on the rheological properties of the flow, but also on the energy transmission between the solid and liquid phases. Several models have been developed to study two-phase debris flows. An essential shortcoming of most of these models is the omission of the interaction between the two phases and identification of the different roles of the different materials in two-phase debris flows. The tracer particles were used for the velocity of solid phase and the velocity of liquid phase was calculated by the water velocity on the surface of the debris flow in the experiments. This paper analyzed the intermittent feature of two-phase debris flows based on videos of debris flows in the field and flume experiments. The experiments showed that the height of the head of the two-phase debris flow increased gradually in the initiation stage and reached equilibrium at a certain distance from the start of the debris flow. The height growth and the velocity of the flow head showed fluctuating characteristics. Model equations were established and the analyses proved that the average velocity of the two-phase debris flow head was proportional to the flood discharge and inversely proportional to the volume of the debris flow head.     

Froude scaling limitations in modeling of turbidity currents

The scaling problem associated with the modeling of turbidity currents has been recognized but is yet to be explored systematically. This paper presents an analysis of the dimensionless governing equations of turbidity currents to investigate the scale effect. Three types of flow conditions are considered: (i) conservative density current; (ii) purely depositional turbidity current; and (iii) mixed erosional/depositional turbidity current. Two controlling dimensionless numbers, the Froude number and the Reynolds number, appear in the non-dimensional governing equations. When densimetric Froude similarity is satisfied, the analysis shows that the results would be scale-invariant for conservative density current under the rough turbulent condition. In the case of purely depositional flows, truly scale-invariant results cannot be obtained, as the Reynolds-mediated scale effects appear in the bottom boundary conditions of the flow velocity and sediment fall velocity. However, the scale effect would be relatively modest. The Reynolds effect becomes more significant for erosional or mixed erosional/depositional turbidity currents as Reynolds-mediated scale effects also appear in the sediment entrainment relation. Numerical simulations have been conducted at three different scales by considering densimetric Froude scaling alone as well as combined densimetric Froude and Reynolds similarity. Simulation results confirm that although the scaling of densimetric Froude number alone can produce scale-invariable results for conservative density currents, variations occur in the case of turbidity currents. The results become scale invariant when densimetric Froude and Reynolds similarities are satisfied simultaneously.     

Heavy metals and soil microbes

Heavy metal pollution is a global issue due to health risks associated with metal contamination. Although many metals are essential for life, they can be harmful to man, animal, plant and microorganisms at toxic levels. Occurrence of heavy metals in soil is mainly attributed to natural weathering of metal-rich parent material and anthropogenic activities such as industrial, mining, agricultural activities. Here we review the effect of soil microbes on the biosorption and bioavailability of heavy metals; the mechanisms of heavy metals sequestration by plant and microbes; and the effects of pollution on soil microbial diversity and activities. The major points are: anthropogenic activities constitute the major source of heavy metals in the environment. Soil chemistry is the major determinant of metal solubility, movement and availability in the soil. High levels of heavy metals in living tissues cause severe organ impairment, neurological disorders and eventual death. Elevated levels of heavy metals in soils decrease microbial population, diversity and activities. Nonetheless, certain soil microbes tolerate and use heavy metals in their systems; as such they are used for bioremediation of polluted soils. Soil microbes can be used for remediation of contaminated soils either directly or by making heavy metals bioavailable in the rhizosphere of plants. Such plants can accumulate 100 mg g^?1 Cd and As; 1000 mg g^?1 Co, Cu, Cr, Ni and 10,000 mg g^?1 Pb, Mn and Ni; and translocate metals to harvestable parts. Microbial activity changes soil physical properties such as soil structure and biochemical properties such as pH, soil redox state, soil enzymes that influence the solubility and bioavailability of heavy metals. The concept of ecological dose (ED₅₀) and lethal concentration (LC₅₀) was developed in response to the need to easily quantify the influence of pollutants on microbial-mediated ecological processes in various ecosystems.     

Polyurethane for removal of organic dyes from textile wastewater

Synthetic organic dyes are extensively used in consumer products from textile to pharmaceuticals. A large amount of organic dyes is ultimately discharged as effluent into water bodies, thus posing a serious threat to environment and life. Therefore, removal of dyes from water bodies is needed. To address this problem, various synthetic and natural materials have been used to adsorb dyes. Here, we review the application of polyurethane for removal of organic dyes. First, we review the application of simple and modified polyurethane as efficient and economic adsorbents for dyes. Secondly, we review the polyurethane-based membranes for separation and adsorption of various dyes. Thirdly, we describe polyurethane composites with improved efficiency of dyes removal. Finally, we review the bioremediation of dyes where polyurethane has been proven as an excellent inert support.     

Technology and science: innovation at the International Symposium on Sustainable Systems and Technology

While science advances technology, it is also true that technology advances science. Thus, the two bodies of knowledge are increasingly recognized as interdependent. Nonetheless, recent advances in information communication technology (ICT), in particular, may have profound implications for the norms by which science is conducted. For example, treatment of data will increasingly be in terms of probability distributions, rather than as point estimates, because the cost of computation is now so low that more robust approaches to treatment of uncertainty are within the grasp of normal science. Perhaps more importantly, the techniques by which scientists collaborate, communicate, and curate science are undergoing a rare period of rapid change. The papers in this special section exemplify the evolution of the relationship between technology and science in these two important ways: (1) treatment of data uncertainties and (2) participation in novel methods of publication and review. The latter was fostered by the 2016 meeting of the International Symposium on Sustainable Systems and Technologies (ISSST), at which all of the papers in this special section were presented. This editorial summarizes some of the trends in ICT that are the subject of experimentation in ISSST and introduces the idea that scientific societies in the information age are more likely to take the form of a network than they are likely to look like the societies of the last several centuries.