Can entropy maximization use functional traits to explain species abundances? A comprehensive evaluation

Entropy maximization (EM) is a method that can link functional traits and community composition by predicting relative abundances of each species in a community using limited trait information. We developed a complementary suite of tests to examine the strengths and limitations of EM and the community-aggregated traits (CATs; i.e., weighted averages) on which it depends that can be applied to virtually any plant community data set. We show that suites of CATs can be used to differentiate communities and that EM can address the classic problem of characterizing ecological niches by quantifying constraints (CATs) on complex trait relationships in local communities. EM outperformed null models and comparable regression models in communities with different levels of dominance, diversity, and trait similarity. EM predicted well the abundance of the dominant species that drive community-level traits; it typically identified rarer species as such, although it struggled to predict the abundances of the rarest species in some cases. Predictions were sensitive to choice of traits, were substantially improved by using informative priors based on null models, and were robust to variation in trait measurement due to intraspecific variability or measurement error. We demonstrate how similarity in species' traits confounds predictions and provide guidelines for applying EM.     

Influence of corallivory, competition, and habitat structure on coral community shifts

The species composition of coral communities has shifted in many areas worldwide through the relative loss of important ecosystem engineers such as highly branched corals, which are integral in maintaining reef biodiversity. We assessed the degree to which the performance of recently recruited branching corals was influenced by corallivory, competition, sedimentation, and the interactions between these factors. We also explored whether the species-specific influence of these biotic and abiotic constraints helps to explain recent shifts in the coral community in lagoons of Moorea, French Polynesia. Population surveys revealed evidence of a community shift away from a historically acroporid-dominated community to a pocilloporid- and poritid-dominated community, but also showed that the distribution and abundance of coral taxa varied predictably with location in the lagoon. At the microhabitat scale, branching corals grew mainly on dead or partially dead massive Porites ("bommies"), promontories with enhanced current velocities and reduced sedimentation. A demographic study revealed that growth and survival of juvenile Pocillopora verrucosa and Acropora retusa, the two most common branching species of each taxon, were affected by predation and competition with vermetid gastropods. By 24 months of age, 20-60% of juvenile corals suffered partial predation by corallivorous fishes, and injured corals experienced reduced growth and survival. A field experiment confirmed that partial predation by corallivorous fishes is an important, but habitat-modulated, constraint for branching corals. Competition with vermetid gastropods reduced growth of both branching species but unexpectedly also provided an associational defense against corallivory. Overall, the impact of abiotic constraints was habitat-specific and similar for Acropora and Pocillopora, but biotic interactions, especially corallivory, had a greater negative effect on Acropora than Pocillopora, which may explain the local shift in coral community composition.     

Negligible evidence for regional genetic population structure for two shark species <Emphasis Type="Italic">Rhizoprionodon acutus</Emphasis> (Rüppell, 1837) and <Emphasis Type="Italic">Sphyrna lewini</Emphasis> (Griffith &; Smith, 1834) with contrasting biology

Biodiversity of sharks in the tropical Indo-Pacific is high, but species-specific information to assist sustainable resource exploitation is scarce. The null hypothesis of population genetic homogeneity was tested for scalloped hammerhead shark (Sphyrna lewini, n = 237) and the milk shark (Rhizoprionodon acutus, n = 207) from northern and eastern Australia, using nuclear (S. lewini, eight microsatellite loci; R. acutus, six loci) and mitochondrial gene markers (873 base pairs of NADH dehydrogenase subunit 4). We were unable to reject genetic homogeneity for S. lewini, which was as expected based on previous studies of this species. Less expected were similar results for R. acutus, which is more benthic and less vagile than S. lewini. These features are probably driving the genetic break found between Australian and central Indonesian R. acutus (F-statistics; mtDNA, 0.751–0.903, respectively; microsatellite loci, 0.038–0.047 respectively). Our results support the spatially homogeneous monitoring and management plan for shark species in Queensland, Australia.     

Dryland salinity and vector-borne disease emergence in southwestern Australia

Broad-scale clearing of native vegetation for agriculture in southwestern Australia has resulted in severe ecosystem degradation, which has been compounded by the subsequent development of large areas of dryland salinity; decreased transevaporation allows the water table to rise, dissolving ancient aeolian salt deposits and creating saline surface pools. The mosquito-borne disease Ross River virus has been noted as a potential adverse human health outcome in salinity-affected regions because the principal vector, Aedes camptorhynchus, is salt tolerant and thrives preferentially in such systems. To understand the geology and ecology underlying the relationship between land clearing and disease emergence, we examine the relationship between dryland salinity processes that determine the dissolved solids profile of saline pools in affected areas, the mosquito vectors and interactions with the human population within the disease cycle. Aedes camptorhynchus is able to survive in a wide range of salinities in pools created by dryland salinity processes. The link with disease emergence is achieved where population distribution and activity overlaps with the convergence of environmental and ecological conditions that enhance disease transmission.     

Flow regimes in gaps within stands of flexible vegetation: laboratory flume simulations

Analyses of results from laboratory flume experiments are presented in which flow within gaps in canopies of flexible, submerged aquatic vegetation simulations is investigated. The aims of the work are (a) to identify the different flow regimes that may be found within such gaps, using Morris’ classical definitions of skimming flow, wake interference flow and isolated roughness flow as a template, (b) to determine the parameter space in which those flow regimes are most consistently delineated, and (c) to provide quantitative measurements of the loci of each flow regime within that parameter space for these experiments. The sedimentary and biological implications of each flow regime are also discussed. The results show that five flow regimes may be identified, expanding on Morris’ original set of three. The five are: (i) skimming flow; (ii) recirculation flow; (iii) boundary layer recovery; (iv) canopy through-flow; and (v) isolated roughness flow, the last being assumed to occur in some cases though it is not directly observed in these experiments. A Reynolds number based on the canopy overflow speed and the gap depth, and the gap aspect ratio are found to be the key parameters that determine these flow regimes, though a Froude number is found to be important for determining bed shear stress, and the length of leaves overhanging the gap from the upstream canopy is found to be important in determining the location of flow recirculation cells within the gap.     

Coral identity underpins architectural complexity on Caribbean reefs

The architectural complexity of ecosystems can greatly influence their capacity to support biodiversity and deliver ecosystem services. Understanding the components underlying this complexity can aid the development of effective strategies for ecosystem conservation. Caribbean coral reefs support and protect millions of livelihoods, but recent anthropogenic change is shifting communities toward reefs dominated by stress-resistant coral species, which are often less architecturally complex. With the regionwide decline in reef fish abundance, it is becoming increasingly important to understand changes in coral reef community structure and function. We quantify the influence of coral composition, diversity, and morpho-functional traits on the architectural complexity of reefs across 91 sites at Cozumel, Mexico. Although reef architectural complexity increases with coral cover and species richness, it is highest on sites that are low in taxonomic evenness and dominated by morpho-functionally important, reef-building coral genera, particularly Montastraea. Sites with similar coral community composition also tend to occur on reefs with very similar architectural complexity, suggesting that reef structure tends to be determined by the same key species across sites. Our findings provide support for prioritizing and protecting particular reef types, especially those dominated by key reef-building corals, in order to enhance reef complexity.     

An assessment of benthic condition in several small watersheds of the Chesapeake Bay, USA

We examined benthic condition in three small watersheds in the Chesapeake Bay. Characterization of benthic condition was based on the combined measurements of benthic fauna, sediment toxicity, and sediment contaminant loads. Significant differences between watersheds were detected for sediment contaminant concentrations and water quality. The intensity of benthic impairment was greatest in the river surrounded by the most developed watershed. Spatial patterns of benthic condition were detected within all three watersheds. In contrast to current, intense focus on nutrient pollution in the Chesapeake Bay, qualitative comparison of our findings to land-use patterns supports findings of other studies that suggest benthic condition in tributaries of the Chesapeake Bay may more closely relate to urbanization than agricultural land uses.     

Identification of tetramethylarsonium in rice grains with elevated arsenic content

Tetramethylarsonium has for the first time been identified in a commercially grown food product, rice, constituting up to 5.8% of the total arsenic in the rice.     

Drug markets during the Katrina disaster

PURPOSE: The purpose of this paper is to examine the experiences of poor drug users and sellers who remained in New Orleans during Hurricane Katrina in 2005 to identify their special needs and the unique challenges they present to disaster management. DESIGN/METHODOLOGY/APPROACH: Semi-structured, open-ended interviews were conducted with 119 poor, predominantly African-American, drug users and sellers. Their stories in their own words provide a mosaic of drug-related experiences from the period immediately preceding the storm through evacuation and reveal the motivations behind their behaviors. FINDINGS: Many drug users placed partying, maintaining their habits, and making money ahead of personal safety and evacuation. Drug use and sales led many not to evacuate before the storm, to use drugs in congregate shelters, to avoid shelters, to roam through flooded debris-strewn streets, to loot stores and homes of drug dealers, and to use violence or the threat of violence to achieve their drug-related aims. ORIGINALITY/VALUE: During a disaster, many poor drug users place risks on themselves, their families, their communities and ultimately on rescue workers. The conclusion presents pragmatic and humanitarian guidelines for successfully addressing this additional challenge. The recommendations are consistent with other suggestions concerning the special needs of indigent populations.