Importance of timely metadata curation to the global surveillance of genetic diversity

Genetic diversity within species represents a fundamental yet underappreciated level of biodiversity. Because genetic diversity can indicate species resilience to changing climate, its measurement is relevant to many national and global conservation policy targets. Many studies produce large amounts of genome-scale genetic diversity data for wild populations, but most (87%) do not include the associated spatial and temporal metadata necessary for them to be reused in monitoring programs or for acknowledging the sovereignty of nations or Indigenous peoples. We undertook a distributed datathon to quantify the availability of these missing metadata and to test the hypothesis that their availability decays with time. We also worked to remediate missing metadata by extracting them from associated published papers, online repositories, and direct communication with authors. Starting with 848 candidate genomic data sets (reduced representation and whole genome) from the International Nucleotide Sequence Database Collaboration, we determined that 561 contained mostly samples from wild populations. We successfully restored spatiotemporal metadata for 78% of these 561 data sets (n = 440 data sets with data on 45,105 individuals from 762 species in 17 phyla). Examining papers and online repositories was much more fruitful than contacting 351 authors, who replied to our email requests 45% of the time. Overall, 23% of our email queries to authors unearthed useful metadata. The probability of retrieving spatiotemporal metadata declined significantly as age of the data set increased. There was a 13.5% yearly decrease in metadata associated with published papers or online repositories and up to a 22% yearly decrease in metadata that were only available from authors. This rapid decay in metadata availability, mirrored in studies of other types of biological data, should motivate swift updates to data-sharing policies and researcher practices to ensure that the valuable context provided by metadata is not lost to conservation science forever.     

Gender impact on first trimester markers in Down syndrome screening

The influence of fetal gender on the level in the first trimester of the serological markers alpha-fetoprotein (AFP), pregnancy-associated plasma protein-A (PAPP-A) and free beta human chorionic gonadotropin (βhCG) and on nuchal translucency is described for 2637 singleton pregnancies with normal outcome. Mean log MoM values for pregnancies with female and male fetuses were calculated using regression of log marker values on gestational age expressed as crown rump length and on maternal weight. A pronounced gender impact was found for free βhCG, being 16% higher for female than for male fetuses. Copyright © 2002 John Wiley & Sons, Ltd.     

“Is this really a police station?”: Police department exteriors and judgments of authority, professionalism, and approachability

This study examined the relationship between exteriors of police department facilities and participants’ ratings of the buildings’ authority, professionalism, and approachability. After a pilot study, research was conducted with 122 participants who were undergraduate students from a small, liberal arts college in the Northeast. On each of three characteristics (authority, professionalism, and approachability), participants rated 16 color images of police departments located in the United States. The façade ratings for each characteristic were then categorized into factors through factor analyses. There were three factors for authority (Ineffectual, Strong, and Outdated); three for professionalism (Unskilled, Non-traditional, and Governmental); and four for approachability (Uninviting, Accessible, Public, and Impenetrable). The results were compared to participants’ scores on the Right-Wing Authoritarianism Scale (Altemeyer, 1981) and the Social Dominance Orientation scale (Sidanius & Pratto, 1999). Although the primary goal for the study was to determine whether there are consistent responses to police department exteriors, it was hypothesized that the façade ratings would relate to the authoritarianism ratings, with more authoritarian people expected to rate the façades higher in authority. Although this hypothesis was not supported, significant findings were related to gender. Applications to architectural design are discussed.     

Investigating freshwater periphyton community response to uranium with phospholipid fatty acid and denaturing gradient gel electrophoresis analyses

Periphyton communities can be used as monitors of ecosystem health and as indicators of contamination in lotic systems. Measures of biomass, community structure, and genetic diversity were used to investigate impacts of uranium (U) exposure on periphyton. Laboratory exposures of periphyton in river water amended with 238U were performed for 5 days, followed by 2 days of U depuration in unamended river water. Productivity as measured by biomass was not affected by concentrations up to 100 microg238U L(-1). Phospholipid fatty acid (PLFA) profiles and denaturing gradient gel electrophoresis (DGGE) banding patterns revealed no changes in community or genetic structure related to U exposure. We suggest that the periphyton community as a whole was not significantly impacted by exposures of 238U up to a concentration of 100 microgL(-1). These findings have significance for the assessment and prediction of U impacts on aquatic ecosystems.     

Egg buoyancy variability in local populations of Atlantic cod (Gadus morhua)

Previous studies have found strong evidences for Atlantic cod (Gadus morhua) egg retention in fjords, which are caused by the combination of vertical salinity structure, estuarine circulation, and egg specific gravity, supporting small-scaled geographical differentiations of local populations. Here, we assess the variability in egg specific gravity for selected local populations of this species, that is, two fjord-spawning populations and one coastal-spawning population from Northern Norway (66–71°N/10–25°E). Eggs were naturally spawned by raised broodstocks (March to April 2009), and egg specific gravity was measured by a density-gradient column. The phenotype of egg specific gravity was similar among the three local populations. However, the associated variability was greater at the individual level than at the population level. The noted gradual decrease in specific gravity from gastrulation to hatching with an increase just before hatching could be a generic pattern in pelagic marine fish eggs. This study provides needed input to adequately understand and model fish egg dispersal.     

THE EFFECT OF RESIDENTIAL DEVELOPMENT ON GROUND‐WATER QUALITY NEAR DETROIT,MICHIGAN1

ABSTRACT: Two water‐quality studies were done on the outskirts of the Detroit metropolitan area to determine how recent residential development has affected ground‐water quality. Pairs of monitor and domestic wells were sampled in areas where residential land use overlies glacial outwash deposits. Young, shallow waters had significantly higher median concentrations of nitrate, chloride, and dissolved solids than older, deeper waters. Analysis of chloride/bromide ratios indicates that elevated salinities are due to human activities rather than natural factors, such as upward migration of brine. Trace concentrations of volatile organic compounds were detected in samples from 97 percent of the monitor wells. Pesticides were detected infrequently even though they are routinely applied to lawns and roadways in the study area. The greatest influence on ground‐water quality appears to be from septic‐system effluent (domestic sewage, household solvents, water‐softener backwash) and infiltration of storm‐water runoff from paved surfaces (road salt, fuel residue). No health‐related drinking‐water standards were exceeded in samples from domestic wells. However, the effects of human activities are apparent in 76 percent of young waters, and at depths far below 25 feet, which is the current minimum well‐depth requirement.     

Conditions for citizen co-production in a resilient,efficient and legitimate flood risk governance arrangement. A tentative framework

Across Europe, there is an increasing trend towards citizen involvement in the implementation of flood risk governance. Policy-makers increasingly advocate co-produced flood risk governance (FRG), whereby citizens are actively engaged in the implementation of flood risk policy, for example, by taking property-level protection measures. In doing so, they aim to make FRG more resilient, efficient and legitimate [Mees, H., Crabbé, A., Alexander, M., Kaufmann, M., Bruzzone, L., Levy, L., & Lewandowski, J. (2016a). Coproducing flood risk management through citizen involvement: Insights from cross-country comparison in Europe. Ecology and Society, 21(3), 7. http://dx.doi.org/10.5751/ES-08500-210307]. Co-production, however, also raises important questions concerning these aims. In this paper, the opportunities and limitations of and barriers to citizen co-production in FRG in terms of resilience, efficiency and legitimacy are investigated by an extensive review of literature on citizen co-production in other public services and on individual and community-based climate change adaptation and FRG. Based on this, a tentative framework is developed on the required conditions to enable co-produced FRG, which benefits both the resilience, efficiency and legitimacy of FRG.     

纳滤膜在洁霉素废水浓缩分离中的应用

考察了DLNF₂-30(0.24m²)、MPS-44(1.4m²) 2种卷式纳滤膜串联运行时对洁霉素废水中残余洁霉素的浓缩性能.实验结果表明,当进水中洁霉素浓度为200mg/L 时,对废水浓缩10～20倍后洁霉素浓度可浓缩至2000mg/L 以上,满足回用要求,浓缩时间为60～70h.在浓缩过程中,COD_Cr的截留率始终高于80%,洁霉素截留率始终高于90%,且洁霉素的回收率高于90%.