Studying crop sequences with CarrotAge,a HMM-based data mining software

We have developed a knowledge discovery system based on high-order hidden Markov models for analyzing spatio-temporal data bases. This system, named CarrotAge , takes as input an array of discrete data – the rows represent the spatial sites and the columns the time slots – and builds a partition together with its a posteriori probability. CarrotAge has been developed for studying the cropping patterns of a territory. It uses therefore an agricultural drench database, named Ter-Uti , which records every year the land-use category of a set of sites regularly spaced. The results of CarrotAge are interpreted by agronomists and used in research works linking agricultural land use and water management. Moreover, CarrotAge can be used to find out and study crop sequences in large territories, that is a main question for agricultural and environmental research, as discussed in this paper.     

A Habitat-Based Metapopulation Model of the California Gnatcatcher

We present an analysis of the metapopulation dynamics of the federally threatened coastal California Gnatcatcher (Polioptila c. californica) for an approximately 850 km² region of Orange County, California. We developed and validated a habitat suitability model for this species using data on topography, vegetation, and locations of gnatcatcher pair observations. Using this habitat model, we calculated the spatial structure of the metapopulation, including size and location of habitat patches and the distances among them. We used data based on field studies to estimate parameters such as survival, fecundity, dispersal, and catastrophes, and combined these parameters with the spatial structure to build a stage-structured, stochastic, spatially-explicit metapopulation model. The model predicted a fast decline and high risk of population extinction with most combinations of parameters. Results were most sensitive to density-dependent effects, the probability of weather-related catastrophes, adult survival, and adult fecundity. Based on data used in the model, the greatest difference in results was given when the simulation's time horizon was only a few decades, suggesting that modeling based on longer or shorter time horizons may underestimate the effects of alternative management actions.     

Comparison between the carbon-14 and oxygen consumption method for the determination of the activity of heterotrophic bacterial populations

The activity of the heterotrophic microbial population in the saline Lake Grevelingen (The Netherlands) and the Mediterranean Etang Salses Leucate (France) was determined by measuring the oxygen consumption rate, and the uptake of ¹⁴C-labelled glycollate, pyruvate and an amino acid mixture. The maximum uptake rate of the applied organic compounds in Lake Grevelingen was generally less than 10% of the carbon mineralization rate calculated from the oxygen consumption experiments. Only for pyruvate and glycollate higher values were found of about 30 to 40% with one exceptionally high value for pyruvate of 149%. However, these higher percentages were found in winter, when the activity of the heterotrophic microbial population was very low. In Etang Salses Leucate higher maximum uptake rates of the ¹⁴C-labelled compounds were found, relating this uptake to the oxygen consumption rate. Yet the maximum uptake rate is still always lower than 35% of the carbon mineralization calculated from the oxygen uptake rate. Taking into account that maximum uptake rates were considered, the results demonstrate that the uptake of ¹⁴C-labelled organic compounds represents a serious underestimation of the activity of the bacterial population in situ. The extent of the underestimation depends on the water type. It was concluded that the determination of the heterotrophic activity by measuring oxygen consumption rates offers a better insight into the carbon mineralization process in natural waters than the uptake experiments with ¹⁴C-labelled substrates.Communication no. 228 of the Delta Institute for Hydrobiological Research, Yerseke, The Netherlands     

Self-monitoring of reproductive success: nest switching in the redlip blenny (Pisces: Blenniidae)

Summary In the redlip blenny Ophioblennius atlanticus, commonly found on Caribbean reefs, eggs are laid in a male's nest and are guarded by the male until they hatch as planktonic larvae. Male reproductive success, defined as the number of egg batches hatched per reproductive period, was positively correlated with male size and with the inner surface area of the male's nest. Male blennies often switch nests between reproductive periods. Most nest switching (83%) occurred following periods of low reproductive success. Moreover, a male having low reproductive success was more likely to switch if the inner surface area of his nest was small. Most nest switching (72–80%) was to a nest of larger surface area than the previous nest. In 72% of all switches, males had higher reproductive success in the period following the switch than in the one preceding it. The results suggest that male redlip blennies monitor their current reproductive success and the characteristics of their current nests, switch to better nests if their reproductive success is low, and typically benefit from the decision to do so. These capabilities have seldom been demonstrated in any phylum.     

First trimester prenatal diagnosis of haemophilia A: Two years' experience

We evaluated the feasibility, reliability, and acceptability of prenatal diagnosis of haemophilia A by DNA analysis of chorionic villi. Twenty-two women at risk to transmit the abnormal gene were referred for prenatal diagnosis, two of them twice. Two of the 22 women appeared to be non-carriers by DNA analysis. In one of these women, the results were known only after chorionic villus sampling had been carried out. Thirteen of the twenty carriers were heterozygous for an intragenic (Bell or Xbal) marker; six women were only heterozygous for the extragenic DXS52 (Stl4) locus. One of the women was homozygous for all the presently known DNA markers within or closely linked with the factor VIII locus. Twelve of the 22 fetuses at risk were male, ten were female. Seven of the 12 male fetuses were shown to be affected and were subsequently aborted. Four male fetuses appeared to be not affected. In one case, the diagnosis was made by use of an extragenic marker. The woman rejected fetal blood sampling to confirm the diagnosis. After birth, a normal factor VIII level was found in three of the four cases. The fourth pregnancy is still continuing. In one of the 12 male fetuses, no diagnosis at the gene level was possible. DNA analysis is expected to provide maximum certainty as to the phenotype of the fetus for approximately 60 per cent of the women; for another 37 per cent a rate of misdiagnosis of 4–5 per cent applies. In only 3 per cent of the cases will no diagnosis at the gene level be possible as yet. The new possibility of a prenatal diagnosis in the first trimester of pregnancy enabled some of these women to have a family of their own and was appreciated in particular by the women who underwent fetoscopy in an earlier pregnancy.     

Application of response surface methodology for the optimization of biodiesel production from yellow mustard (Sinapis alba L.) seed oil

In the present study, response surface methodology (RSM) involving central composite design (CCD) was applied to optimize the reaction parameters of biodiesel production from yellow mustard (Sinapis alba L.) seed oil during the single-step transesterification process. A total of 30 experiments were designed and performed to determine under the effects of variables on the biodiesel yield such as methanol to oil molar ratio (2:1–10:1), catalyst concentration (0.2–1.0 wt.% NaOH), reaction temperature (50–70°C), and reaction time (30–90 min). The second order polynomial model was used to predict the biodiesel yield and coefficient of determination (R²) was found to be at 0.9818. The optimum biodiesel yield was calculated as 96.695% from the model with the following reaction conditions: 7.41:1 of methanol to oil molar ratio, 0.63 wt. % NaOH of catalyst concentration, 61.84°C of reaction temperature, and 62.12 min of reaction time. It is seen that the regression model results were in agreement with the experimental data. The results showed that RSM is a suitable statistical technique for optimizing the reaction parameters in the transesterification process in order to maximize the biodiesel yield.     

Seasonal,diurnal and nocturnal variations of carbonyl compounds in the semi-urban environment of Orléans,France

Atmospheric carbonyls were measured at a semi-urban site in Orléans, France, from October 2010to July2011. Formaldehyde, acetaldehyde and acetone were found to be the most abundant carbonyls, with average concentrations of 3.1, 1.0, 2.0 ppb, respectively in summer, 2.3, 0.7, 2.2 ppb, respectively in autumn, 2.2, 1.0, 2.1 ppb, respectively in spring,and 1.5, 0.7, 1.1 ppb, respectively in winter. Photo-oxidation of volatile organic compounds(VOCs) was found to make a remarkable contribution to atmospheric carbonyls in the semi-urban site based on the distinct seasonal and diurnal variations of the carbonyls, as well as the significantly positive correlations between the carbonyls and ozone. The significantly negative correlations between NO x and O_3 as well as the carbonyls and the positive correlations between wind speed and O_3 as well as the carbonyls implied that the carbonyls and O_3 at the semi-urban site were probably formed during air mass transport from neighboring cities.     

Employees' reactions to problematic events: a circumplex structure of five categories of responses,and the role of job satisfaction

A refined exit, voice, loyalty, and neglect (EVLN) typology (Farrell, 1983) was examined. It was argued that the category of voice responses, that is, attempts to improve the situation, should be divided into two forms: considerate voice and aggressive voice. Considerate voice consists of attempts to solve the problem taking into account one's own concerns as well as those of the organization, and aggressive voice consists of efforts to win, without consideration for the concerns of the organization. In line with Farrell (1983), all categories of behavioral responses were assumed to differ on two dimensions, namely, destructive–constructive and active–passive. It was assumed that the responses can be ordered in a circumplex structure. Factor analyses of data from 233 teachers and maternity nurses demonstrated the empirical separability of the five categories of behavioral responses and supported the two‐dimensional structure of the model. Job satisfaction, especially satisfaction with supervision, seemed to promote considerate voice and loyalty (that was relabeled as patience), and suppress exit, aggressive voice, and neglect. Furthermore, the correlations between job satisfaction and the five responses provided additional support for the circumplex structure of the refined model. The pattern of responses runs in the following order: considerate voice, aggressive voice, exit, neglect, patience. Copyright © 1999 John Wiley & Sons, Ltd.     

Mating effort and space use of an alpine ungulate during the rut

In ungulates, the rut generally leads to increased intra and interpopulation movements for males. Because movements induce energetic costs and missed feeding opportunities, they could be an indication of male mating effort. We studied space use of 44 male mountain goats (Oreamnos americanus) from three neighboring subpopulations in southeast Alaska, during the rut from 2005 to 2008. Using mixed models and an information theoretic approach with AIC, we analyzed the relationships between individual traits of males and their space use. We found no indication of breeding migration between subpopulations. Distances between individual seasonal ranges were not related to any individual trait. Daily movements, home range sizes, and total distance traveled during the rut did not vary with mass or age of individuals. As such, effects of individual traits on male space use during the rut appear weak and observed space use patterns do not support any of the main mating effort hypotheses.     

Potential correlation between perfluorinated acids and liver morphology in East Greenland polar bears (Ursus maritimus)

In this study, residual concentrations of chlorpyrifos (CPF) were determined in feed (40) and fodder (25) samples collected from various locations of Tarai region of Uttarakhand. For extracting residues, liquid–liquid partition followed by alumina column clean up was used and the detection and quantification of residues was undertaken with the help of high-performance liquid chromatography using C18 column and diode array detector at 220?nm. Of the total 40 feed samples analyzed, 7 (17.5%) samples were found positive for CPF with the mean residual concentration of 0.058?µg?g^?1; while out of 25 fodder samples, CPF residues were detected in a single (4%) sample with residual concentration of 0.39?µg?g^?1. However, none of the feed or fodder samples contained CPF residues above the prescribed limit.