Utilizing pyrosequencing and quantitative PCR to characterize fungal populations among house dust samples

Molecular techniques are an alternative to culturing and counting methods in quantifying indoor fungal contamination. Pyrosequencing offers the possibility of identifying unexpected indoor fungi. In this study, 50 house dust samples were collected from homes in the Yakima Valley, WA. Each sample was analyzed by quantitative PCR (QPCR) for 36 common fungi and by fungal tag-encoded flexible (FLX) amplicon pyrosequencing (fTEFAP) for these and additional fungi. Only 24 of the samples yielded amplified results using fTEFAP but QPCR successfully amplified all 50 samples. Over 450 fungal species were detected by fTEFAP but most were rare. Twenty-two fungi were found by fTEFAP to occur with at least an average of ≥0.5% relative occurrence. Many of these fungi seem to be associated with plants, soil or human skin. Combining fTEFAP and QPCR can enhance studies of fungal contamination in homes.     

Impact of wastewater treatment plant discharge of lidocaine, tramadol, venlafaxine and their metabolites on the quality of surface waters and groundwater

The presence of the anesthetic lidocaine (LDC), the analgesic tramadol (TRA), the antidepressant venlafaxine (VEN) and the metabolites O-desmethyltramadol (ODT) and O-desmethylvenlafaxine (ODV) was investigated in wastewater treatment plant (WWTP) effluents, in surface waters and in groundwater. The analytes were detected in all effluent samples and in only 64% of the surface water samples. The mean concentrations of the analytes in effluent samples from WWTPs with wastewater from only households and hospitals were 107 (LDC), 757 (TRA), 122 (ODT), 160 (VEN) and 637 ng L(-1) (ODV), while the mean concentrations in effluents from WWTPs treating additionally wastewater from pharmaceutical industries as indirect dischargers were for some pharmaceuticals clearly higher. WWTP effluents were identified as important sources of the analyzed pharmaceuticals and their metabolites in surface waters. The concentrations of the compounds found in surface waters ranged from 相似文献   

Attribution of Carbon Dioxide Fluxes to Crop Types in a Heterogeneous Agricultural Landscape of Argentina

The increasing proportion of agricultural lands worldwide makes it necessary to intensify the research concerning the carbon exchange at agricultural sites. In order to determine the Net Ecosystem Exchange (NEE) in an agricultural landscape in the province of Buenos Aires, Argentina, we carried out eddy covariance measurements with a flux tower, which was placed between two agricultural fields. Therefore, the measured CO₂ flux represents the accumulated flux from both areas, i.e., from different crop types. We here present an analysis method which attributes the flux to the two crop types. For this analysis, we applied the Hsieh footprint model to identify the contributing source area to the flux measurement. We then applied a multiple regression analysis to calculate the NEE in the growing season 2011/2012 for each field separately. The pronounced differences in the time courses of the CO₂ fluxes in the two fields can be explained by the different sowing times and different growth stages of both cultivations. The time courses furthermore show that the CO₂ uptake of the plants was strongly affected by the drought which lasted from December 2011 to January 2012. For the growth cycle of maize (216 days), the NEE was ?240 g C m^?2 and for the growth cycle of soybean (154 days) ?231 g C m^?2. In order to obtain the NEE of a complete agricultural cycle (from harvest to harvest), we also considered the NEE of autumn and winter 2011. Uncertainties of the spatially partitioned NEE are quantified and discussed.     

Biomonitoring of polychlorinated biphenyls (PCBs) in heavily polluted aquatic environment in different fish species

The distribution and concentrations of polychlorinated biphenyls (PCBs) were determined in fish species (European perch Perca fluviatilis, northern pike Esox lucius, pike perch Sander lucioperca, wels catfish Silirus glanus, common carp Cyprinus carpio, European eel Anguilla anguilla, freshwater bream Abramis brama, goldfish Carassius auratus, and roach Rutilus rutilus) in a heavily polluted water reservoir Zemplínska ?írava (Slovakia). The study performed at two different time points 5?years apart (2004 and 2009) revealed serious PCB contamination of fish muscle tissue and significant interspecies as well as tissue-specific differences in PCB uptake by fish. Total PCBs broadly correlated with the trophic position of individual fish species within a food chain (P??0.05). The study has shown that the kind of fish, its feeding habit, and specific conditions of the habitat are mutually interrelated factors that are responsible for significant variations in fish body burdens. A tendency to PCB biomagnification was also proved in some fish species of this water reservoir.     

Large and mesoscale meteo-oceanographic patterns in local responses of biogeochemical concentrations

Investigations surrounding the variability of productivity in upwelling regions are necessary for a better understanding the physical-biological coupling in these regions by monitoring systems of environmental impacts according to the needs of the regional coastal management. Using a spatial and temporal database from National Centers for Environmental Prediction (NCEP) and National Center for Atmospheric (NCAR) Research reanalysis, Quick Scatterometer vector wind, and surface stations from the Southeast coast of Brazil, we investigate the meteorological influences due to the large-scale systems in the variability of the nutrient and larvae concentration, and chlorophyll a, describing statistically relationships between them in upwelling regions. In addition, we used multivariate analysis, such as PCA and clustering to verify spatial and temporal variances and describe more clear the structure and composition of the ecosystem. Correlation matrix analyses were applied for different water masses present in the study area to identify the relations between physical and biogeochemical parameters in a region, where frequently upwelling occur. Statistical approaches and seasonal variability show that the period of November to March is more sensitive to nutrients (1.20?mg/m(3) for chlorophyll a, 2.20?μmol/l for total nitrogen and 5.5?ml/l for DO) and larvae concentrations (120 org/m(3) for most of the larvae, except for cirripedia that presented values around 370 org/m(3)) relating to the influence of large and mesoescale meteorological patterns. The spatial and temporal variables analyzed with multivariate approach show meaningful seasonality variance of the physical and biological samples, characterizing the principal components responsible for this variance in spring and summer (upwelling period), emphasizing the monitoring of species as crustaceans and mussels that are present in the local economy. Then, the spring and summer season are characterized by high productivity due to the occurrence of upwelling in this period.     

Potential effects on the marine environment of dredging of the Bonny channel in the Niger Delta

This study is an assessment of the possible effects of the dredging project on the water quality of the surrounding environment. Water quality data for the Bonny offshore river were collected. The parameters assessed were temperature, dissolved oxygen (DO), pH, biochemical oxygen demand (BOD), total dissolved solids (TDS), total suspended solids (TSS), nitrogen as nitrate, and phosphate. The concentrations of TDS, TSS, and nitrate far exceeded the permissible standard. There were significant differences between the dry and rainy season values of BOD5, TDS, TSS, nitrate, and phosphate. Also, the sediment physicochemical analysis indicated the presence of heavy metals such as Pb, Fe, Cd, Zn, Cr, and elements such as Ca, K, and Na. Following an assessment of the potential impact of the project using interaction matrix and checklist questionnaires, results showed that the major physicochemical parameters influenced by dredging are DO, TDS, TSS, heavy metals and calcium, potassium, and sodium. Mitigation measures for eliminating or reducing the negative impacts of dredging are presented.     

Multivariate analysis of mixed contaminants (PAHs and heavy metals) at manufactured gas plant site soils

Principal component analysis (PCA) was used to provide an overview of the distribution pattern of polycyclic aromatic hydrocarbons (PAHs) and heavy metals in former manufactured gas plant (MGP) site soils. PCA is the powerful multivariate method to identify the patterns in data and expressing their similarities and differences. Ten PAHs (naphthalene, acenapthylene, acenaphthene, fluorene, phenanthrene, anthracene, fluoranthene, pyrene, chrysene, benzo[a]pyrene) and four toxic heavy metals — lead (Pb), cadmium (Cd), chromium (Cr) and zinc (Zn) — were detected in the site soils. PAH contamination was contributed equally by both low and high molecular weight PAHs. PCA was performed using the varimax rotation method in SPSS, 17.0. Two principal components accounting for 91.7% of the total variance was retained using scree test. Principle component 1 (PC1) substantially explained the dominance of PAH contamination in the MGP site soils. All PAHs, except anthracene, were positively correlated in PC1. There was a common thread in high molecular weight PAHs loadings, where the loadings were inversely proportional to the hydrophobicity and molecular weight of individual PAHs. Anthracene, which was less correlated with other individual PAHs, deviated well from the origin which can be ascribed to its lower toxicity and different origin than its isomer phenanthrene. Among the four major heavy metals studied in MGP sites, Pb, Cd and Cr were negatively correlated in PC1 but showed strong positive correlation in principle component 2 (PC2). Although metals may not have originated directly from gaswork processes, the correlation between PAHs and metals suggests that the materials used in these sites may have contributed to high concentrations of Pb, Cd, Cr and Zn. Thus, multivariate analysis helped to identify the sources of PAHs, heavy metals and their association in MGP site, and thereby better characterise the site risk, which would not be possible if one uses chemical analysis alone.     

Heavy metal pattern and solute concentration in soils along the oldest highway of the world – the AVUS Autobahn

Highways and main roads are a potential source of contamination for the surrounding environment. High traffic rates result in elevated heavy metal concentrations in road runoff, soil and water seepage, which has attracted much attention in the recent past. Nonetheless, investigations of pollutants in roadside soils are still a subject of major interest due to the rapid development of traffic systems and increasing traffic all over the world. The accumulation of the heavy metals Pb, Cd, Cu and Zn in soils along the oldest federal highway of the world has been studied by sampling a roadside transect of 125 by 10?m. In addition, heavy metal concentrations of Pb, Cd, Zn, Cu, Ni and Cr in soil solutions from different distances (2.5, 5 and 10?m) from the hard shoulder of the highway and from three soil depths (10, 30, and 50?cm) were investigated. The results show that heavy metal concentrations are up to 20 times increased compared to the geochemical background levels and a reference site of 800-m distance from the roadside. Soil matrix concentrations in the topsoil (0-10?cm) mostly exceeded the precautionary values of the German Federal Soil Protection and Contamination Ordinance (BBodSchV). The concentrations of Cd, Pb and Zn in the soil matrix tended to decrease with distance from the roadside edge, whereas the concentrations in the soil solution increased at a distance of 10?m onwards due to a lower soil pH. Because of both high pH values and a high sorption capacity of the soils, soil solution concentrations seldom exceeded the trigger values of the German Federal Soil Protection and Contamination Ordinance (BBodSchV) for transferring soil solution to groundwater.     

Tidally driven N, P, Fe and Mn exchanges in salt marsh sediments of Tagus estuary (SW Europe)

Short-sediment cores and flooding water were collected at 0, 5, 15, 25 and 50?min of tidal inundation in the two sites colonised by pure stands of Spartina maritima (low marsh) and Sarcocornia fruticosa (high marsh) from the Rosário salt marsh (Tagus estuary, SW Europe). Concentrations of NH (4) (+) , NO (3) (-) +?NO (2) (-) and HPO (4) (2-) , Fe and Mn were measured in tidal flooding water and pore water. Flooding water is enriched in nutrients, particularly ammonium due to local discharge of untreated urban effluents. Nevertheless, NH (4) (+) and NO (3) (-) +?NO (2) (-) concentrations in flooding waters at t?=?5?min (NH (4) (+) =?246?±?7?μM, NO (3) (-) +?NO (2) (-) =?138?±?1?μM for S. fruticosa and NH (4) (+) =?256?±?8?μM, NO (3) (-) +?NO (2) (-) =?138?±?1?μM for S. maritima) rose sharply at both vegetated sites. An increase was also registered for HPO (4) (2-) and total dissolved Fe although the subsequent decrease was smoother. Advective transport induced by the two daily pulses of inundation is several orders of magnitude higher than the diffusive fluxes during submerged periods. In addition, solutes are exported from the sediment with the inundation and imported in submerged periods. The exported amount of inorganic nitrogen during tidal inundation (export of 3,200?μmol?N?m(-2)?day(-1)to the water column), is not counterbalanced by the sink of -290?μmol?N?m(-2)?day(-1) occurred during the submerged period.     

Assessment and monitoring of long-term forest cover changes in Odisha, India using remote sensing and GIS

Deforestation and fragmentation are important concerns in managing and conserving tropical forests and have global significance. In the Indian context, in the last one century, the forests have undergone significant changes due to several policies undertaken by government as well as increased population pressure. The present study has brought out spatiotemporal changes in forest cover and variation in forest type in the state of Odisha (Orissa), India, during the last 75 years period. The mapping for the period of 1924–1935, 1975, 1985, 1995 and 2010 indicates that the forest cover accounts for 81,785.6 km² (52.5 %), 56,661.1 km² (36.4 %), 51,642.3 km² (33.2 %), 49,773 km² (32 %) and 48,669.4 km² (31.3 %) of the study area, respectively. The study found the net forest cover decline as 40.5 % of the total forest and mean annual rate of deforestation as 0.69 %?year^?1 during 1935 to 2010. There is a decline in annual rate of deforestation during 1995 to 2010 which was estimated as 0.15 %. Forest type-wise quantitative loss of forest cover reveals large scale deforestation of dry deciduous forests. The landscape analysis shows that the number of forest patches (per 1,000) are 2.463 in 1935, 10.390 in 1975, 11.899 in 1985, 12.193 in 1995 and 15.102 in 2010, which indicates high anthropogenic pressure on the forests. The mean patch size (km²) of forest decreased from 33.2 in 1935 to 5.5 in 1975 and reached to 3.2 by 2010. The study demonstrated that monitoring of long term forest changes, quantitative loss of forest types and landscape metrics provides critical inputs for management of forest resources.