Utilizing pyrosequencing and quantitative PCR to characterize fungal populations among house dust samples

Molecular techniques are an alternative to culturing and counting methods in quantifying indoor fungal contamination. Pyrosequencing offers the possibility of identifying unexpected indoor fungi. In this study, 50 house dust samples were collected from homes in the Yakima Valley, WA. Each sample was analyzed by quantitative PCR (QPCR) for 36 common fungi and by fungal tag-encoded flexible (FLX) amplicon pyrosequencing (fTEFAP) for these and additional fungi. Only 24 of the samples yielded amplified results using fTEFAP but QPCR successfully amplified all 50 samples. Over 450 fungal species were detected by fTEFAP but most were rare. Twenty-two fungi were found by fTEFAP to occur with at least an average of ≥0.5% relative occurrence. Many of these fungi seem to be associated with plants, soil or human skin. Combining fTEFAP and QPCR can enhance studies of fungal contamination in homes.     

Impact of wastewater treatment plant discharge of lidocaine, tramadol, venlafaxine and their metabolites on the quality of surface waters and groundwater

The presence of the anesthetic lidocaine (LDC), the analgesic tramadol (TRA), the antidepressant venlafaxine (VEN) and the metabolites O-desmethyltramadol (ODT) and O-desmethylvenlafaxine (ODV) was investigated in wastewater treatment plant (WWTP) effluents, in surface waters and in groundwater. The analytes were detected in all effluent samples and in only 64% of the surface water samples. The mean concentrations of the analytes in effluent samples from WWTPs with wastewater from only households and hospitals were 107 (LDC), 757 (TRA), 122 (ODT), 160 (VEN) and 637 ng L(-1) (ODV), while the mean concentrations in effluents from WWTPs treating additionally wastewater from pharmaceutical industries as indirect dischargers were for some pharmaceuticals clearly higher. WWTP effluents were identified as important sources of the analyzed pharmaceuticals and their metabolites in surface waters. The concentrations of the compounds found in surface waters ranged from 相似文献   

Attribution of Carbon Dioxide Fluxes to Crop Types in a Heterogeneous Agricultural Landscape of Argentina

The increasing proportion of agricultural lands worldwide makes it necessary to intensify the research concerning the carbon exchange at agricultural sites. In order to determine the Net Ecosystem Exchange (NEE) in an agricultural landscape in the province of Buenos Aires, Argentina, we carried out eddy covariance measurements with a flux tower, which was placed between two agricultural fields. Therefore, the measured CO₂ flux represents the accumulated flux from both areas, i.e., from different crop types. We here present an analysis method which attributes the flux to the two crop types. For this analysis, we applied the Hsieh footprint model to identify the contributing source area to the flux measurement. We then applied a multiple regression analysis to calculate the NEE in the growing season 2011/2012 for each field separately. The pronounced differences in the time courses of the CO₂ fluxes in the two fields can be explained by the different sowing times and different growth stages of both cultivations. The time courses furthermore show that the CO₂ uptake of the plants was strongly affected by the drought which lasted from December 2011 to January 2012. For the growth cycle of maize (216 days), the NEE was ?240 g C m^?2 and for the growth cycle of soybean (154 days) ?231 g C m^?2. In order to obtain the NEE of a complete agricultural cycle (from harvest to harvest), we also considered the NEE of autumn and winter 2011. Uncertainties of the spatially partitioned NEE are quantified and discussed.     

Large and mesoscale meteo-oceanographic patterns in local responses of biogeochemical concentrations

Investigations surrounding the variability of productivity in upwelling regions are necessary for a better understanding the physical-biological coupling in these regions by monitoring systems of environmental impacts according to the needs of the regional coastal management. Using a spatial and temporal database from National Centers for Environmental Prediction (NCEP) and National Center for Atmospheric (NCAR) Research reanalysis, Quick Scatterometer vector wind, and surface stations from the Southeast coast of Brazil, we investigate the meteorological influences due to the large-scale systems in the variability of the nutrient and larvae concentration, and chlorophyll a, describing statistically relationships between them in upwelling regions. In addition, we used multivariate analysis, such as PCA and clustering to verify spatial and temporal variances and describe more clear the structure and composition of the ecosystem. Correlation matrix analyses were applied for different water masses present in the study area to identify the relations between physical and biogeochemical parameters in a region, where frequently upwelling occur. Statistical approaches and seasonal variability show that the period of November to March is more sensitive to nutrients (1.20?mg/m(3) for chlorophyll a, 2.20?μmol/l for total nitrogen and 5.5?ml/l for DO) and larvae concentrations (120 org/m(3) for most of the larvae, except for cirripedia that presented values around 370 org/m(3)) relating to the influence of large and mesoescale meteorological patterns. The spatial and temporal variables analyzed with multivariate approach show meaningful seasonality variance of the physical and biological samples, characterizing the principal components responsible for this variance in spring and summer (upwelling period), emphasizing the monitoring of species as crustaceans and mussels that are present in the local economy. Then, the spring and summer season are characterized by high productivity due to the occurrence of upwelling in this period.     

Potential effects on the marine environment of dredging of the Bonny channel in the Niger Delta

This study is an assessment of the possible effects of the dredging project on the water quality of the surrounding environment. Water quality data for the Bonny offshore river were collected. The parameters assessed were temperature, dissolved oxygen (DO), pH, biochemical oxygen demand (BOD), total dissolved solids (TDS), total suspended solids (TSS), nitrogen as nitrate, and phosphate. The concentrations of TDS, TSS, and nitrate far exceeded the permissible standard. There were significant differences between the dry and rainy season values of BOD5, TDS, TSS, nitrate, and phosphate. Also, the sediment physicochemical analysis indicated the presence of heavy metals such as Pb, Fe, Cd, Zn, Cr, and elements such as Ca, K, and Na. Following an assessment of the potential impact of the project using interaction matrix and checklist questionnaires, results showed that the major physicochemical parameters influenced by dredging are DO, TDS, TSS, heavy metals and calcium, potassium, and sodium. Mitigation measures for eliminating or reducing the negative impacts of dredging are presented.     

Tidally driven N, P, Fe and Mn exchanges in salt marsh sediments of Tagus estuary (SW Europe)

Short-sediment cores and flooding water were collected at 0, 5, 15, 25 and 50?min of tidal inundation in the two sites colonised by pure stands of Spartina maritima (low marsh) and Sarcocornia fruticosa (high marsh) from the Rosário salt marsh (Tagus estuary, SW Europe). Concentrations of NH (4) (+) , NO (3) (-) +?NO (2) (-) and HPO (4) (2-) , Fe and Mn were measured in tidal flooding water and pore water. Flooding water is enriched in nutrients, particularly ammonium due to local discharge of untreated urban effluents. Nevertheless, NH (4) (+) and NO (3) (-) +?NO (2) (-) concentrations in flooding waters at t?=?5?min (NH (4) (+) =?246?±?7?μM, NO (3) (-) +?NO (2) (-) =?138?±?1?μM for S. fruticosa and NH (4) (+) =?256?±?8?μM, NO (3) (-) +?NO (2) (-) =?138?±?1?μM for S. maritima) rose sharply at both vegetated sites. An increase was also registered for HPO (4) (2-) and total dissolved Fe although the subsequent decrease was smoother. Advective transport induced by the two daily pulses of inundation is several orders of magnitude higher than the diffusive fluxes during submerged periods. In addition, solutes are exported from the sediment with the inundation and imported in submerged periods. The exported amount of inorganic nitrogen during tidal inundation (export of 3,200?μmol?N?m(-2)?day(-1)to the water column), is not counterbalanced by the sink of -290?μmol?N?m(-2)?day(-1) occurred during the submerged period.     

Assessment and monitoring of long-term forest cover changes in Odisha, India using remote sensing and GIS

Deforestation and fragmentation are important concerns in managing and conserving tropical forests and have global significance. In the Indian context, in the last one century, the forests have undergone significant changes due to several policies undertaken by government as well as increased population pressure. The present study has brought out spatiotemporal changes in forest cover and variation in forest type in the state of Odisha (Orissa), India, during the last 75 years period. The mapping for the period of 1924–1935, 1975, 1985, 1995 and 2010 indicates that the forest cover accounts for 81,785.6 km² (52.5 %), 56,661.1 km² (36.4 %), 51,642.3 km² (33.2 %), 49,773 km² (32 %) and 48,669.4 km² (31.3 %) of the study area, respectively. The study found the net forest cover decline as 40.5 % of the total forest and mean annual rate of deforestation as 0.69 %?year^?1 during 1935 to 2010. There is a decline in annual rate of deforestation during 1995 to 2010 which was estimated as 0.15 %. Forest type-wise quantitative loss of forest cover reveals large scale deforestation of dry deciduous forests. The landscape analysis shows that the number of forest patches (per 1,000) are 2.463 in 1935, 10.390 in 1975, 11.899 in 1985, 12.193 in 1995 and 15.102 in 2010, which indicates high anthropogenic pressure on the forests. The mean patch size (km²) of forest decreased from 33.2 in 1935 to 5.5 in 1975 and reached to 3.2 by 2010. The study demonstrated that monitoring of long term forest changes, quantitative loss of forest types and landscape metrics provides critical inputs for management of forest resources.     

Metals in water, sediments, and biota of an offshore oil exploration area in the Potiguar Basin, Northeastern Brazil

Metal concentrations were evaluated in water, bottom sediments, and biota in four field campaigns from 2002 to 2004 in the Potiguar Basin, northeastern Brazil, where offshore oil exploration occurs. Analyses were performed by inductively coupled plasma mass spectrometry and inductively coupled plasma optical emission spectrometry. Total metal concentrations in water (dissolved?+?particulate) and sediments were in the range expected for coastal and oceanic areas. Abnormally high concentrations in waters were only found for Ba (80 μg?l^?1) and Mn (12 μg?l^?1) at the releasing point of one of the outfalls, and for the other metals, concentrations in water were found in stations closer to shore, suggesting continental inputs. In bottom sediments, only Fe and Mn showed abnormal concentrations closer to the effluent releasing point. Metal spatial distribution in shelf sediments showed the influence of the silt–clay fraction distribution, with deeper stations at the edge of the continental shelf, which are much richer in silt–clay fraction showing higher concentrations than shallower sediments typically dominated by carbonates. Metal concentrations in estuarine (mollusks and crustaceans) and marine (fish) organisms showed highest concentrations in oysters (Crassostrea rhizophorae). Fish tissues metal concentrations were similar between the continental shelf influenced by the oil exploration area and a control site. The results were within the range of concentrations reported for pristine environments without metals contamination. The global results suggest small, if any, alteration in metal concentrations due to the oil exploration activity in the Potiguar Basin. For monitoring purposes, the continental inputs and the distribution of the clay–silt fraction need to be taken into consideration for interpreting environmental monitoring results.     

A geographical approach to tracking Escherichia coli and other water quality constituents in a Texas coastal plains watershed

Diffuse sources of surface water pathogens and nutrients can be difficult to isolate in larger river basins. This study used a geographical or nested approach to isolate diffuse sources of Escherichia coli and other water quality constituents in a 145.7-km² river basin in south central Texas, USA. Average numbers of E. coli ranged from 49 to 64,000 colony forming units (CFU) per 100 mL depending upon season and stream flow over the 1-year sampling period. Nitrate-N concentrations ranged from 48 to 14,041 μg?L^?1 and orthophosphate-P from 27 to 2,721 μg?L^?1. High concentrations of nitrate-N, dissolved organic nitrogen, and orthophosphate-P were observed downstream of waste water treatment plants but E. coli values were higher in a watershed draining an older part of the city. Total urban land use explained between 56 and 72 % of the variance in mean annual E. coli values (p?<?0.05) in nine hydrologically disconnected creeks. Of the types of urban land use, commercial land use explained most of the variance in E. coli values in the fall and winter. Surface water sodium, alkalinity, and potassium concentrations in surface water were best described by the proportion of commercial land use in the watershed. Based on our nested approach in examining surface water, city officials are able to direct funding to specific areas of the basin in order to mitigate high surface water E. coli numbers and nutrient concentrations.     

Delineating shallow saline groundwater zones from Southern India using geophysical indicators

A geophysical survey was conducted over an industrial belt encompassing 80 functional leather factories in Southern India. These factories discharge untreated effluents which pollute shallow groundwater where electrical conductivity (EC) value had a wide range between 545 and 26,600 μS/cm (mean, 3, 901 μS/cm). The ranges of Na⁺ and Cl^? ions were from 46 to 4,850 mg/L (mean, 348 mg/L) and 25 to 10,390 mg/L (mean, 1,079 mg/L), respectively. Geoelectrical layer parameters of 37 vertical electrical soundings were analyzed to demarcate fresh and saline water zones. However, the analysis not did lead to a unique resolution of saline and fresh waters. It was difficult to assign a definitive value to the aquifer resistivity of any area. Thus, geophysical indicators, namely longitudinal unit conductance (S), transverse unit resistance (T), and average longitudinal resistivity (R _s), were calculated for identifying fresh and saline waters. Spatial distributions of S, T, and R _s reflected widely varying ranges for the saline and fresh water zones. Further, the empirical relation of formation factor (F) was established from pore-water resistivity and aquifer resistivity for fresh and saline aquifers, which may be used to estimate local EC values from the aquifer resistivity, where well water is not available.