Time and space: genetic structure of the cohorts of the common sea urchin <Emphasis Type="Italic">Paracentrotus</Emphasis><Emphasis Type="Italic">lividus</Emphasis> in Western Mediterranean

Spatio-temporal variability in settlement and recruitment, high mortality during the first life-history stages, and selection may determine the genetic structure of cohorts of long-lived marine invertebrates at small scales. We conducted a spatial and temporal analysis of the common Mediterranean Sea urchin Paracentrotus lividus to determine the genetic structure of cohorts at different scales. In Tossa de Mar (NW Mediterranean), recruitment was followed over 5 consecutive springs (2006–2010). In spring 2008, recruits and two-year-old individuals were collected at 6 locations along East and South Iberian coasts separated from 200 to over 1,100 km. All cohorts presented a high genetic diversity based on a fragment of mtCOI. Our results showed a marked genetic homogeneity in the temporal monitoring and a low degree of spatial structure in 2006. In 2008, coupled with an abnormality in the usual circulation patterns in the area, the genetic structure of the southern populations studied changed markedly, with arrival of many private haplotypes. This fact highlights the importance of point events in renewing the genetic makeup of populations, which can only be detected through analysis of the cohort structure coupling temporal and spatial perspectives.     

Normalisation models for accounting for fat content in stable isotope measurements in salmonid muscle tissue

Stable isotope analysis is increasingly used in ecological studies. Because lipid content influences δ¹³C, lipids should be removed from lipid-rich samples before δ¹³C analysis. To account for differences in δ¹³C arising from differences in lipid content, relationships between lipid content, C:N ratio and Δδ¹³C with lipid removal can be used to normalise lipid content to uniform levels. We investigate these relationships for salmonid muscle and evaluate the suitability of previously published normalisation equations for these fish. Salmonids with a wide range of condition (muscle lipid content = 3–35% of dry weight) were considered. There were no consistent relationships between lipid content or C:N ratio and Δδ¹⁵N. There were linear relationships between C:N ratio and lipid content (L = −16.53 + 6.27 × C:N); C:N ratio and Δδ¹³C (Δδ¹³C = −1.87 + 0.65 × C:N); and lipid content and Δδ¹³C (Δδ¹³C = 0.01 + 0.10 × L), which should be used on salmonid stable isotope studies.     

Do regular sea urchins show preference in which part of the body they orient forward in their walk?

Regular sea urchins, which have pentaradial symmetry, have been believed to show no preference in which part of the body forward they proceed with. Through use of circular statistics, we show that the regular sea urchin Hemicentrotus pulcherrimus had no preference with respect to what body part, as determined by Lovén’s system, should be anterior in locomotion. The sea urchins, however, preferably proceeded with the body part, which had contacted with the aquarium walls at rest, forward. When the contact part was artificially altered, the body part facing forward in the following proceeding changed accordingly: the animals walked with the part that had contacted last forward. The biological significance of this behavior was discussed in relation to the aggregation formation and homing behavior.     

Mercury bioaccumulation in arthropods from typical community habitats in a zinc-smelting area

This study assessed the enrichment of mercury in the food web from the different community habitats in a zinc-smelting area of China. We used a nitrogen stable isotope technique to analyze trophic level relationships among arthropods and found that the first trophic level consisted of plants in the different community habitats, the second trophic level consisted of herbivores such as locusts and grasshoppers (primary consumers), and the third trophic level included spiders and mantes (secondary consumers). Mercury enrichment in the primary consumers was not evident, but enrichment in arthropods of the third trophic level was significant. The average of enrichment coefficients in spiders and mantes was greater than 1. The δ¹⁵N values indicated that mercury concentrations accumulated from primary producers to top carnivorous arthropods increased. In this zinc-smelting area, the biological amplification of mercury in the food web is significant. It is reasonable to assume that humans, located at the top of the food chain, are exposed to biomagnified levels of mercury.     

Historical trends of organochlorine pesticides (OCPs) recorded in sediments across the Tibetan Plateau

Sediment cores from four lakes across the Tibetan Plateau were used as natural archives to study the time trends of organochlorine pesticides (OCPs). The total concentrations of dichlorodiphenyltrichloroethane (ΣDDT) and hexachlorocyclohexane isomers (ΣHCH) were in the range of 0.04–1.61 and 0.08–1.88 ng/g based on dry weight (dw), while the input fluxes were in the range of 0.3–236 and 0.7–295 pg/cm²/y in the core sediments, respectively. The input fluxes of ΣDDT and ΣHCH generally peaked in sediment layers corresponding to the 1970s–1990s and peaked in top sediment layers. The ratio of α/γ-HCH decreased in the top layer sediments, implying that the contribution of lindane (pure γ-HCH) has been increasing in recent years. In addition, the ratio of o,p′-DDT/p,p′-DDT increased significantly over the last 15–20 years, suggesting that dicofol (characterized by high ratio of o,p′-DDT/p,p′-DDT about 7.0) has recently become a relatively more important source of DDT compared to technical DDT itself. The time trends of OCPs recorded in lake sediments examined the impact on such remote alpine regions by human activities.     

Pollution indices as useful tools for the comprehensive evaluation of the degree of soil contamination–A review

The paper provides a complex, critical assessment of heavy metal soil pollution using different indices. Pollution indices are widely considered a useful tool for the comprehensive evaluation of the degree of contamination. Moreover, they can have a great importance in the assessment of soil quality and the prediction of future ecosystem sustainability, especially in the case of farmlands. Eighteen indices previously described by several authors (I_geo, PI, EF, C_f, PI_sum, PI_Nemerow, PLI, PI_ave, PI_Vector, PIN, MEC, CSI, MERMQ, C_deg, RI, mCd and ExF) as well as the newly published Biogeochemical Index (BGI) were compared. The content, as determined by other authors, of the most widely investigated heavy metals (Cd, Pb and Zn) in farmland, forest and urban soils was used as a database for the calculation of all of the presented indices, and this shows, based on statistical methods, the similarities and differences between them. The indices were initially divided into two groups: individual and complex. In order to achieve a more precise classification, our study attempted to further split indices based on their purpose and method of calculation. The strengths and weaknesses of each index were assessed; in addition, a comprehensive method for pollution index choice is presented, in order to best interpret pollution in different soils (farmland, forest and urban). This critical review also contains an evaluation of various geochemical backgrounds (GBs) used in heavy metal soil pollution assessments. The authors propose a comprehensive method in order to assess soil quality, based on the application of local and reference GB.     

Effect of ultra-sonication and its use with sodium hypochlorite as antifouling method against <Emphasis Type="Italic">Mytilus edulis</Emphasis> larvae and mussel

Biofouling is a stubborn problem in cooling systems where using raw water from lakes, rivers, and sea. The effect of ultrasound and its sequential application with sodium hypochlorite (chlorination) upon marine bivalve Mytilus edulis (blue mussel), a massive fouling organism, has been studied and discussed here. The results obtained from the work carried out have shown that 42 kHz ultrasound is better than 28 kHz in accordance with veliger larvae mortality. The 42 kHz ultrasound has enhanced the mortality rate of veliger larvae than only free-residual chlorination up to 99%. On the other side, the 14-mm size mussel was less resistance than 25-mm size mussel to 42 kHz ultrasonication, among the studied two sizes (14 and 25 mm) of the blue mussel. Lethal time (100%) have decreased by 1–12% used for the sequential action of 42 kHz ultrasonic followed by free-residual chlorination compare with only free-residual chlorination treatment. The obtained results are put forward that the application of ultra-sonication before chlorination can reduce the mussel extinct time up to 12%. Obviously, this result will provide a possible use of ultra-sonication with famous chlorination antifouling treatment and eventually can decrease the chlorine exposure time and dose. It could discharge low chlorine by-products that may provide an environment friendly way.     

Hydrodynamics and contaminant transport on a degraded bed at a 90-degree channel confluence

Channel confluences at which two channels merge have an important effect on momentum exchange and contaminant diffusion in both natural rivers and artificial canals. In this study, a three-dimensional numerical model, which is based on the Reynolds Averaged Navier–Stokes equations and Reynolds Stress Turbulence model, is applied to simulate and compare flow patterns and contaminant transport processes for different bed morphologies. The results clearly show that the distribution of contaminant concentrations is mainly controlled by the shear layer and two counter-rotating helical cells, which in turn are affected by the discharge ratio and the bed morphology. As the discharge ratio increases, the shear flow moves to the outer bank and the counter-clockwise tributary helical cell caused by flow deflection is enlarged, leading the mixing happens near the outer bank and the mixing layer distorted. The bed morphology can induce shrinkage of the separation zone and increase of the clockwise main channel helical cell, which is initiated by the interaction between the tributary helical cell and the main channel flow and strengthened by the deep scour hole. The bed morphology can also affect the distortion direction of the mixing layer. Both a large discharge ratio and the bed morphology could lead to an increase in mixing intensity.     

Estimation of maximum scour depths at upstream of front and rear piers for two in-line circular columns

Previous investigations indicate that scour around bridge piers is one of the most important factors for the failure of waterway bridges. Hence, it is essential to determine the accurate scour depth around the bridge piers. Most of the previous studies were based on scour around a single pier; however, in practice, new bridges are usually wide and then piers comprise two circular piers aligned in the flow direction that together support the loading of the structure. In this study, the effect on maximum scour depth of the spacing between two piers aligned in the flow direction was investigated experimentally under clear water scour conditions. The results show that the maximum scour depth at upstream of the front pier occurs when the spacing between the two piers is 2.5 times the diameter of the pier. Two semi empirical equations have been developed to predict the maximum scour depth at upstream of both front and rear piers as a function of the spacing between the piers, in terms of a pier-spacing factor. If the new equations for the pier-spacing factor are used with some of the existing equations for scour at a single pier, the predicted scouring depths are in good agreement with observed results. The S/M equation exhibited the best performance among the various equations tested and was recommended for use in prediction of the equilibrium scour depth. The findings of this study can be used to facilitate the positioning of piers when scouring is a design concern.     

Bayesian estimation of species relative abundances and habitat preferences using opportunistic data

We develop a new statistical procedure to monitor relative species abundances and their respective preferences for different habitat types, using opportunistic data. Following Giraud et al. (Biometrics 72(2):649–658, 2015), we combine the opportunistic data with some standardized data in order to correct the bias inherent to the opportunistic data collection. Species observations are modeled by Poisson distributions whose parameters quantify species abundances and habitat preferences, and are estimated using Bayesian computations. Our main contributions are (i) to tackle the bias induced by habitat selection behaviors, (ii) to handle data where the habitat type associated to each observation is unknown, (iii) to estimate probabilities of selection of habitat for the species. As an illustration, we estimate common bird species habitat preferences and abundances in the region of Aquitaine (France).