Radioactivity in fossils at the Hagerman Fossil Beds National Monument

Since 1996, higher than background levels of naturally occurring radioactivity have been documented in both fossil and mineral deposits at Hagerman Fossil Beds National Monument in south-central Idaho. Radioactive fossil sites occur primarily within an elevation zone of 900-1000 m above sea level and are most commonly found associated with ancient river channels filled with sand. Fossils found in clay rich deposits do not exhibit discernable levels of radioactivity. Out of 300 randomly selected fossils, approximately three-fourths exhibit detectable levels of natural radioactivity ranging from 1 to 2 orders of magnitude above ambient background levels when surveyed with a portable hand held Geiger-Muller survey instrument. Mineral deposits in geologic strata also show above ambient background levels of radioactivity. Radiochemical lab analysis has documented the presence of numerous natural radioactive isotopes. It is postulated that ancient groundwater transported radioactive elements through sand bodies containing fossils which precipitated out of solution during the fossilization process. The elevated levels of natural radioactivity in fossils may require special precautions to ensure that exposures to personnel from stored or displayed items are kept as low as reasonably achievable (ALARA).     

Preservation of ancient DNA in thermally damaged archaeological bone

Evolutionary biologists are increasingly relying on ancient DNA from archaeological animal bones to study processes such as domestication and population dispersals. As many animal bones found on archaeological sites are likely to have been cooked, the potential for DNA preservation must be carefully considered to maximise the chance of amplification success. Here, we assess the preservation of mitochondrial DNA in a medieval cattle bone assemblage from Coppergate, York, UK. These bones have variable degrees of thermal alterations to bone collagen fibrils, indicative of cooking. Our results show that DNA preservation is not reliant on the presence of intact collagen fibrils. In fact, a greater number of template molecules could be extracted from bones with damaged collagen. We conclude that moderate heating of bone may enhance the retention of DNA fragments. Our results also indicate that ancient DNA preservation is highly variable, even within a relatively recent assemblage from contexts conducive to organic preservation, and that diagenetic parameters based on protein diagenesis are not always useful for predicting ancient DNA survival.     

COVID-19: how a self-monitoring checklist can empower early intervention and slow disease progression

The SARS-CoV-2 novel coronavirus pandemic has revealed many scientific, social, and institutional challenges required to improve the health and wellbeing of individuals stricken by this disease. While organizations and governing institutions have risen to the task to concurrently prepare for and respond to this pandemic under conditions of high uncertainty and extreme pressure, another important aspect of this viral infection deserves attention and is not being fully considered, that is early intervention strategies and structured tools for individuals who test positive for the virus and begin developing symptoms. For those whose infection is progressing, we describe the potential benefits of a self-monitoring tool for use in combination with physician directed early medical interventions to slow COVID-19 progression.

     

Foodweb modeling for polychlorinated biphenyls (PCBs) in the Twelvemile Creek Arm of Lake Hartwell,South Carolina,USA

PCBs from the Sangamo-Weston Superfund Site near Clemson, South Carolina, USA, were released into the Twelvemile Creek Arm of Lake Hartwell until the early 1990s. Monitoring data have shown that while PCB concentration in sediments declined since 1995, PCB concentrations in fish have remained elevated, e.g., largemouth bass (Micropterus salmoides) concentrations have ranged from 5 to 10 ppm. The EPA aquatic ecosystem model AQUATOX was applied to this system to better characterize foodweb dynamics that lead to biomagnification of PCBs. The model was calibrated with observed fish biomass data. Simulated PCB loading over a 12-year period provided a reasonable fit to observed PCB data in fish. The model demonstrated that contaminated labile detritus loaded to the system was incorporated into the foodweb rather than deposited, thereby maintaining the PCB concentrations in fish while concentrations in the sediment declined. A dominant PCB pathway was from detritus to daphnia to shad to largemouth bass. Fish PCB concentrations showed moderate sensitivity to toxicant parameters; model runs incorporating uncertainty in these parameters predicted recovery (<2 ppm PCB) for all species in the range of years from 2008 to 2013. The high sensitivity of the model to parameters related to growth strongly affected PCB concentrations in fish and should be considered in future AQUATOX applications.     

Food webs and intraguild predation: community interactions of a native mesocarnivore

Trophic level interactions between predators create complex relationships such as intraguild predation. Theoretical research has predicted two possible paths to stability in intraguild systems: intermediate predators either outcompete higher-order predators for shared resources or select habitat based on security. The effects of intraguild predation on intermediate mammalian predators such as swift foxes (Vulpes velox) are not well understood. We examined the relationships between swift foxes and both their predators and prey, as well the effect of vegetation structure on swift fox-coyote (Canis latrans) interactions, between August 2001 and August 2004. In a natural experiment created by the Pinon Canyon Maneuver Site in southeastern Colorado, USA, we documented swift fox survival and density in a variety of landscapes and compared these parameters in relation to prey availability, coyote abundance, and vegetation structure. Swift fox density varied significantly between study sites, while survival did not. Coyote abundance was positively related to the basal prey species and vegetation structure, while swift fox density was negatively related to coyote abundance, basal prey species, and vegetation structure. Our results support the prediction that, under intraguild predation in terrestrial systems, top predator distribution matches resource availability (resource match), while intermediate predator distribution inversely matches predation risk (safety match). While predation by coyotes may be the specific cause of swift fox mortality in this system, the more general mechanism appears to be exposure to predation moderated by shrub density.     

Mimics and magnets: the importance of color and ecological facilitation in floral deception

Plants that lack floral rewards can attract pollinators if they share attractive floral signals with rewarding plants. These deceptive plants should benefit from flowering in close proximity to such rewarding plants, because pollinators are locally conditioned on floral signals of the rewarding plants (mimic effect) and because pollinators are more abundant close to rewarding plants (magnet effect). We tested these ideas using the non-rewarding South African plant Eulophia zeyheriana (Orchidaceae) as a study system. Field observations revealed that E. zeyheriana is pollinated solely by solitary bees belonging to a single species of Lipotriches (Halictidae) that appears to be closely associated with the flowers of Wahlenbergia cuspidata (Campanulaceae), a rewarding plant with which the orchid is often sympatric. The pale blue color of the flowers of E. zeyheriana differs strongly from flowers of its congeners, but is very similar to that of flowers of W. cuspidata. Analysis of spectral reflectance patterns using a bee vision model showed that bees are unlikely to be able to distinguish the two species in terms of flower color. A UV-absorbing sunscreen was applied to the flowers of the orchid in order to alter their color, and this resulted in a significant decline in pollinator visits, thus indicating the importance of flower color for attraction of Lipotriches bees. Pollination success in the orchid was strongly affected by proximity to patches of W. cuspidata. This was evident from one of two surveys of natural populations of the orchid, as well as experiments in which we translocated inflorescences of the orchid either into patches of W. cuspidata or 40 m outside such patches. Flower color and location of E. zeyheriana plants relative to rewarding magnet patches are therefore key components of the exploitation by this orchid of the relationship between W. cuspidata and Lipotriches bee pollinators.     

A test of reproductive power in snakes

Reproductive power is a contentious concept among ecologists, and the model has been criticized on theoretical and empirical grounds. Despite these criticisms, the model has successfully predicted the modal (optimal) size in three large taxonomic groups and the shape of the body size distribution in two of these groups. We tested the reproductive power model on snakes, a group that differs markedly in physiology, foraging ecology, and body shape from the endothermic groups upon which the model was derived. Using detailed field data from the published literature, snake-specific constants associated with reproductive power were determined using allometric relationships of energy invested annually in egg production and population productivity. The resultant model accurately predicted the mode and left side of the size distribution for snakes but failed to predict the right side of that distribution. If the model correctly describes what is possible in snakes, observed size diversity is limited, especially in the largest size classes.     

Nuclear magnetic resonance logging: Example applications of an emerging tool for environmental investigations

Nuclear magnetic resonance (NMR) geophysical tools have been widely used in the petroleum exploration industry since the 1960s and have improved significantly in the last two decades. These tools can provide estimates of bulk porosity and fluid content, quantification of bound versus mobile fluids, and estimates of hydraulic conductivity (K). Although the size and cost of oil‐field tools historically limited their use for near‐surface applications, smaller and more economical downhole NMR logging tools are now available for detecting and characterizing the formation water content and K to support environmental and groundwater resource investigations. These tools can be deployed using direct‐push drilling techniques or they can be lowered into existing open borings or wells with nonconductive polyvinyl chloride casings and screens. In many cases, using the tool in existing wells offers a safer and more cost‐effective alternative compared to drilling new boreholes. For environmental investigations, NMR can provide useful high‐resolution quantitative hydrostratigraphic information that can provide additional valuable data to further inform and refine the conceptual site model. This paper highlights several NMR field investigations that demonstrate the viability of this technology as a site characterization tool for near‐surface investigations. NMR measurements were compared to data from lithologic logs, cone penetrometer testing data, and prior field hydraulic tests. Use of NMR to detect vadose zone water, including previously unidentified perched groundwater zones, provided hydrostratigraphic details that could not be gleaned from historical well drilling logs and were used to evaluate drainable pore water versus pore water bound in small pores by capillary forces or electrochemically clay‐bond water. NMR also produced K estimates similar to those from conventional hydraulic tests, but the improved vertical resolution from NMR provided additional information regarding the vertical heterogeneity of the formation along the entire length of the well or borehole. Additionally, bench‐scale tests are presented that confirm the capability for NMR to reliably detect and quantify light nonaqueous phase liquid saturation (specifically diesel fuel and weathered gasoline) in situ. The field tests combined with bench‐scale testing results affirm the applicability and potential for NMR as a practical characterization tool that should increasingly be utilized in environmental investigations.     

Evaluations of combined zebrafish (Danio rerio) embryo and marine phytoplankton (Diacronema lutheri) toxicity of dissolved organic contaminants in the Ythan catchment,Scotland, UK

A wide variety of organic contaminants including pesticides, polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) have previously been detected in surface waters in the river Ythan catchment, North East Scotland UK. While the concentrations detected were below Water Framework Directive Environmental Quality Standards (WFD-EQSs) environmental exposures to the diverse mixtures of contaminants, known and unknown, may pose chronic and/or sublethal effects to non target organisms. The present study assessed the embryo and algal toxicity potential of freely dissolved organic contaminants from the Ythan catchment using silicone rubber passive sampling devices (SR-PSDs) and miniaturised bioassay techniques. Zebrafish (Danio rerio) embryos and marine phytoplankton species (Diacronema lutheri) were exposed to extracts from SR-PSDs deployed at different locations along the river Ythan and an undeployed procedural blank. Statistically significant developmental and algal toxicities were measured in all tests of extracts from deployed samples compared with the procedural blanks. This indicates environmental exposure to, and the combined toxicity potential of, freely dissolved organic contaminants in the catchment. The present and previous studies in the Ythan catchment, coupling SR-PSDs and bioassay techniques, have both helped to understand the interactions and combined effects of dissolved organic contaminants in the catchment. They have further revealed the need for improvement in the techniques currently used to assess environmental impact.     

Is shrimp farming a successful adaptation to salinity intrusion? A geospatial associative analysis of poverty in the populous Ganges–Brahmaputra–Meghna Delta of Bangladesh

The Ganges–Brahmaputra–Meghna delta of Bangladesh is one of the most populous deltas in the world, supporting as many as 140 million people. The delta is threatened by diverse environmental stressors including salinity intrusion, with adverse consequences for livelihood and health. Shrimp farming is recognised as one of the few economic adaptations to the impacts of the rapidly salinizing delta. Although salinity intrusion and shrimp farming are geographically co-located in the delta, there has been no systematic study to examine their geospatial associations with poverty. In this study, we use multiple data sources including Census, Landsat Satellite Imagery and soil salinity survey data to examine the extent of geospatial clustering of poverty within the delta and their associative relationships with salinity intensity and shrimp farming. The analysis was conducted at the union level, which is the lowest local government administrative unit in Bangladesh. The findings show a strong clustering of poverty in the delta, and whilst different intensities of salinization are significantly associated with increasing poverty, neither saline nor freshwater shrimp farming has a significant association with poverty. These findings suggest that whilst shrimp farming may produce economic growth, in its present form it has not been an effective adaptation for the poor and marginalised areas of the delta. The study demonstrates that there are a series of drivers of poverty in the delta, including salinization, water logging, wetland/mudflats, employment, education and access to roads, amongst others that are discernible spatially, indicating that poverty alleviation programmes in the delta require strengthening with area-specific targeted interventions.