Preimplantation genetic testing for aneuploidy: A review of published blastocyst reanalysis concordance data

Preimplantation genetic testing for aneuploidy (PGT-A) reduces miscarriage risk, increases the success of IVF, shortens time to pregnancy, and reduces multiple gestation rates without compromising outcomes. The progression of PGT-A has included common application of next-generation sequencing (NGS) from single nucleotide polymorphism microarray, quantitative real-time PCR, and array comparative hybridization platforms of analysis. Additional putative advances in PGT-A capability include classifying embryos as mosaic and predicting the presence of segmental imbalance. A critical component in the process of technical validation of these advancements involves evaluation of concordance between reanalysis results and initial testing results. While many independent studies have investigated the concordance of results obtained from the remaining embryo with the original PGT-A diagnosis, compilation and systematic analysis of published data has not been performed. Here, we review results from 26 primary research articles describing concordance in 1271 human blastocysts from 2260 pairwise comparisons. Results illustrate significantly higher discordance from PGT-A methods which utilize NGS and include prediction of mosaicism or segmental imbalance. These results suggest caution when considering new iterations PGT-A.     

Estimating the magnitude of morphoscapes: how to measure the morphological component of biodiversity in relation to habitats using geometric morphometrics

Ecological indicators are currently developed to account for the different facets of loss of biological diversity due to direct or indirect effects of human activities. Most ecological indicators include species richness as a metric. Others, such as functional traits and phylogenetic diversity, account for differences in species, even when species richness is the same. Here, we describe and apply a different indicator, called morphoscape dimension, accounting for morphological variability across habitats in a geographical region. We use the case of ground beetles (Coleoptera: Carabidae) in four different habitats in the Po Plain in Northern Italy to exemplify how to quantify the magnitude of the morphological space (i.e. the dimension of the morphoscape) occupied by the species in each habitat using geometric morphometrics. To this aim, we employed a variety of metrics of morphological disparity related to univariate size, and more complex multivariate shape and form. Our ‘proof of concept’ suggests that metrics assessing size and form might largely tend to simply mirror the information provided by species richness, whereas shape morphoscape disparity may be able to account for non-trivial differences in species traits amongst habitats. This is indicated by the woodland morphoscape being on average bigger than that of crops, the most species-rich habitat, despite having almost 20% less species. We conclude suggesting that the analysis of morphoscape dimension has the potential to become a new additional and complimentary tool in the hands of conservation biologists and ecologists to explore and quantify habitat complexity and inform decisions on management and conservation based on a wide set of ecological indicators.     

A jellyfish diet for the herbivorous green turtle Chelonia mydas in the temperate SW Atlantic

Feeding ecology of juvenile green turtles (Chelonia mydas) was studied from 2008 to 2011 at Samborombón Bay (35°30′–36°30′S, Argentina), combining data on digestive tract examination and stable isotope analysis through a Bayesian mixing model. We found that animal matter, in particular gelatinous plankton, was consumed in large proportions compared to herbivorous food items such as terrestrial plants and macroalgae. This diet is facilitated by the high abundance of gelatinous plankton in the region, thus confirming the adaptive foraging behaviour of the juveniles according to prey abundance in the SW Atlantic. To our knowledge, this is the first study to employ this combination of techniques and to conclusively demonstrate that animal matter, in particular gelatinous plankton, is important in the diet of the neritic green sea turtles.     

Analysis of sex sequences by means of generalized linear mixed models

Adaptive strategies of sex allocation functioning to increase fitness, including strategic allocation of sex in relation to birth order and sex composition of the progeny, have frequently been explored, but the development of a statistical framework for these analyses has lagged behind. In this paper, we contribute to filling this gap by devising a method for analyzing sex sequences based on a proper parameterization of generalized linear mixed models (GLMMs). The method is highly flexible and can be easily extended to investigate sequences of traits or events or other longitudinal data. As a worked example, we focus on the analysis of sex sequences of offspring produced by females in a single reproductive event and develop a method that allows analyzing simultaneously sequences of different length (e.g., clutches of different size) and sequences with missing data, as may frequently happen in “real-world” data sets. Different patterns of allocation among traits or events along the sequence were investigated, and a real data base of sex sequences of eclectus parrots (Eclectus roratus) fledglings produced by different females was analyzed. A tutorial for running the analyses with the R or the SAS software is provided in the Electronic Supplementary Material.     

Photodegradation of pesticides .1. Photolysis rates and half‐life of acylanilides and their major metabolites in water

The photolysis in water solution of three fungicides (Metalaxyl, Benalaxyl, and Furalaxyl) was studied under artificial light. At λ = 254 Benalaxyl and Furalaxyl underwent fast degradation with rearrangement reactions less complex than those of Metalaxyl. Under A = 254–290 the photolysis was very fast and Benalaxyl and Furalaxyl show a common behaviour. This was found to be a kinetic consecutive process leading, at first, to N‐2,6‐xylyl‐D,L‐alaninate (II), which was degraded to 2,6‐dimethylaniline (IV). This amine gives unknown products. Metalaxyl underwent a parallel/consecutive photodegradtion to give (II) and N‐(methoxyacetyl)‐2,6‐dimethylaniline (VI). While (II) was easily converted to (IV) as earlier, (VI) was more stable to photolysis. Under λ > 290 all the fungicides shown very slow degradation with pseudo first order rate constants. The photoproducts were degraded faster than the parent compounds by factors from 13 to 1800. The presence of photosensitizer in water (humic acids or acetone) resulted in total decomposition of fungicides and of their photoproducts.     

Land cover effects on water balance partitioning in the Colombian Andes: improved water availability in early stages of natural vegetation recovery

Regional Environmental Change - Vegetation actively affects different components of the water budget in multiple spatial and temporal scales. Changes in vegetation cover and structure—such as...     

Multi-causal and integrated assessment of sustainability: the case of agriculturization in the Argentine Pampas

Assessing the sustainability of complex development processes requires multi-causal and integrated analyses. We develop a system-based methodology, rooted in interdisciplinary discussion and consensus building between 15 experts, to construct a multi-causal diagram which examines the sustainability of the Argentine Pampas′ process of agriculturization. The resulting diagram includes 25 factors and provides a big-picture of the multiple dimensions and interrelations affecting sustainability. According to this examination, the increasing concentration of production and the incorporation of technological innovations, triggered by economic and institutional factors, are the cause of environmental distresses and social changes, whose consequences for sustainability are still highly disputed. Nevertheless, the symptoms of both environmental and social unsustainability are more evident in the case of the extra-Pampean regions than in the Pampas. This suggests that the Pampean agriculture model should not be transferred to these regions without substantial modifications. The experts did not reach consensus on whether the agriculturization process is overall sustainable or unsustainable. Lack of consensus revolved mainly around opposing perspectives regarding the significance of the threats to environmental sustainability. The magnitude of socio-distributive unbalance and loss of rural jobs were also contentious. Yet, the paper shows how the exercise of building a joint causal diagram was undoubtedly helpful for linking piece-meal disciplinary facts, brought in from all fronts, into a comprehensive and coherent picture. Readers should send their comments on this paper to: BhaskarNath@aol.com within 3 months of publication of this issue.     

Simulation of a waste incineration process with flue-gas cleaning and heat recovery sections using Aspen Plus

In the present paper, the modeling of a dual-purpose plant for the production of electrical and thermal energy from the heat treatment of solid wastes is presented. Particularly, the process has been modeled by using the Aspen Plus Shell, with the aim of performing a study about the applicability of this software in the simulation of a solid waste incineration process, which involves complex gas-solid reactions where the solids are referred to as "non-conventional". The model is developed to analyze and quantify the expected benefits associated with refuse derived fuel (RDF) thermal utilization; thus attention is focused on the performance of the energy recovery section.     

Environmental externalities and efficiency measurement

Production of desirable outputs often produces by-products that have harmful effects on the environment. This paper investigates technologies where the biggest good output producer is not the greatest polluter, i.e. technologies located on the downward-sloping segment of the frontier depicted in Färe et al. (1989). Directional distance functions and Data Envelopment Analysis techniques are used to define an algorithm that allows them to be identified empirically. Furthermore, we show that in such situations producers can contribute social goods, i.e. reducing polluting wastes, without limiting their capacity to maximise production of marketable output. Finally, we illustrate our methodology with an empirical application to a sample of Spanish ceramic tile producers.