Preserving Population Allele Frequencies in Ex Situ Conservation Programs

Abstract: Optimization of contributions of parents to progeny by minimizing the average coancestry of the progeny is an effective strategy for maintaining genetic diversity in ex situ conservation programs, but its application on the basis of molecular markers has the negative collateral effect of homogenizing the allelic frequencies at each locus. Because one of the objectives of a conservation program is to preserve the genetic composition of the original endangered population, we devised a method in which markers are used to maintain the allele frequency distribution at each locus as closely as possible to that of the native population. Contributions of parents were obtained so as to minimize changes in allele frequency for a set of molecular markers in a population of reduced size. We used computer simulations, under a range of scenarios, to assess the effectiveness of the method in comparison with methods in which contributions of minimum coancestry are sought, either making use of molecular markers or genealogical information. Our simulations indicated that the proposed method effectively maintained the original distribution of allele frequencies, particularly under strong linkage, and maintained acceptable levels of genetic diversity in the population. Nevertheless, contributions of minimum coancestry determined from pedigree information but ignoring the genealogy previous to the conservation program, was the most effective method for maintaining allelic frequencies in realistic situations.     

Bird Extinctions in Atlantic Forest Fragments of the Viçosa Region, Southeastern Brazil

Abstract:   We studied the conservation status of Atlantic forest birds in 43 forest fragments ranging in size from 1 to 384 ha in the Viçosa region of southeastern Brazil. We compared data from 15 years of field work with historical records from the region, mainly originating from specimens collected by João Moojen during the 1930s. We used published studies associated with museum data and current field work to assess the decline of forest birds during the last 70 years and to relate their disappearance to forest fragmentation and destruction. At least 28 bird species have become locally extinct, 43 are critically endangered, and 25 are vulnerable, representing 60.7% of the original forest bird community known to exist in the region. Vulnerability to fragmentation differed among guilds, forest strata, and endemicity status. Birds that feed on fruit and seeds, and those that feed on insects, were more threatened than omnivores and carnivores. Nectarivorous species were less threatened than other guilds. Moreover, terrestrial and understory birds or birds using only one forest stratum also were more likely to have been threatened. Finally, Atlantic forest endemics were more likely to have become extinct than nonendemic species. In general, sensitivity to environmental disturbance at the local level was similar to the predicted vulnerability to regional disturbance derived from the literature. Our results indicate that a serious decline of Atlantic forest birds is underway and that many other species of birds, not previously recognized as threatened, are of conservation concern .     

不同营养模式下固定化斜生栅藻和普通小球藻氨氮去除能力对比分析

微藻培养耦合污水处理是一项极具潜力的绿色生物技术,具有污染物减排和资源化的双重效应.为明确不同微藻固定化后对NH₄+-N去除的差异及优势,以斜生栅藻和普通小球藻为研究对象,以自由生长为对照,通过5 d的批次培养试验对比分析了2种固定化微藻不同营养模式下对NH₄+-N污水的适应性及其生长特性.结果表明:①对比自由生长,固定化生长可有效提升斜生栅藻在自养和异养模式下的NH₄+-N去除能力,2种模式下最大去除率分别为98%和53%,而在混养模式下,最大去除率则从100%降至86%.②固定化生长对普通小球藻NH₄+-N去除率的提升较弱,仅在自养模式下发挥正效应,最大去除率可升至37%,在混养模式下,其自由生长优势强于固定化生长,当C/N为10时,NH₄+-N第4天即可完全去除.③固定化生长并未改变混养模式下2种微藻生长对ρ(COD_Cr)的依赖性,而该效应在异养模式下并不明显.④除自养模式外,固定化生长均略低于自由生长,并且普通小球藻的生长速率也显著高于斜生栅藻.研究显示,斜生栅藻单个细胞对NH₄+-N的去除能力优于普通小球藻单个细胞,斜生栅藻污水培养的适应性更强,并且固定化自养模式最佳,而普通小球藻固定化优势微弱.      

The Near Extinction of Two Large European Predators: Super Specialists Pay a Price

Abstract:  Despite recovery plans, the Spanish Imperial Eagle ( Aquila adalberti ) and the Iberian lynx ( Lynx pardinus ) are in danger of extinction. These two flagship species tend to occur in pristine Mediterranean forests, and both prey preferentially on the rabbit ( Oryctologus cuniculus ). Spanish lynxes and eagles have sister species in continental Europe, the Eurasian lynx (  Lynx europaeus ) and the Eastern Imperial Eagle ( A. heliaca ), respectively. Recent genetic evidence indicates that these two pairs of species started to diverge from their ancestor species slightly less than 1 million years ago, when the longest-lasting Pleistocene glaciations covered Europe. We hypothesize that the Iberian lynx and the Spanish Imperial Eagle emerged as separate species in the Pleistocene refugia of southern Spain, where they hunted yet another locally evolved species, the rabbit, on which they have become dependent for survival. Two large predators that emerged at the same time may go extinct simultaneously because of their inability to shift to alternative prey. Many other relict species, including numerous species from oceanic islands, have naturally small populations because of evolutionary constraints and are permanently threatened with extinction. Recovery plans aimed at putting these species out of danger are unrealistic, as their populations are and have been chronically scarce. We suggest that what these species need are maintenance plans designed to buffer population declines due to either stochastic or human-induced events. A metaphor for this would be "emergency care units" for conservation.     

Species Review of Amphibian Extinction Risks in Madagascar: Conclusions from the Global Amphibian Assessment

Abstract:  We assessed the extinction risks of Malagasy amphibians by evaluating their distribution, occurrence in protected areas, population trends, habitat quality, and prevalence in commercial trade. We estimated and mapped the distribution of each of the 220 described Malagasy species and applied, for the first time, the IUCN Red List categories and criteria to all species described at the time of the assessment. Nine species were categorized as critically endangered, 21 as endangered, and 25 as vulnerable. The most threatened species occur on the High Plateau and/or have been subjected to overcollection for the pet trade, but restricted extent of occurrence and ongoing habitat destruction were identified as the most important factors influencing extinction threats. The two areas with the majority of threatened species were the northern Tsaratanana-Marojejy-Masoala highlands and the southeastern Anosy Mountains. The current system of protected areas includes 82% of the threatened amphibian species. Of the critically endangered species, 6 did not occur in any protected area. For conservation of these species we recommend the creation of a reserve for the species of the Mantella aurantiaca group, the inclusion of two Scaphiophryne species in the Convention on the International Trade in Endangered Species Appendix II, and the suspension of commercial collecting for Mantella cowani . Field surveys during the last 15 years reveal no pervasive extinction of Malagasy amphibians resulting from disease or other agents, as has been reported in some other areas of the world.     

Small Populations and Offspring Sex-Ratio Deviations in Eagles

Abstract:  Stochastic variation of sex ratio has long been appreciated as a potential factor driving small populations to extinction, but it is not the only source of sex-ratio bias in small populations. We examined whether some consequences of sex allocation could affect extinction risk in small populations of size-dimorphic birds such as eagles. We report variations in sex ratio at fledging from a long-term study of a declining population of Spanish Imperial Eagles ( Aquila adalberti ). Nestling sex-ratio deviation apparently was mediated by age of breeders, whereas territory quality had no obvious effect. Adult–adult pairs produced the same proportion of both sexes in high- or low-density situations, but pairs with at least one member in nonadult plumage class produced more males. As the population declined over a period of years, the proportion of breeders with immature plumage increased; consequently, the proportion of fledgling males increased. However, when population density was high, the proportion of breeders with immature plumage decreased and more female offspring were produced. This relationship between population density, composition of breeder age, and fledgling sex ratios allowed us to make predictions of extinction risk due to nonstochastic deviations of sex ratio in small, declining populations. In the study population, on the basis of the Vortex simulation results, an estimated reduction of 42.5% in predicted mean time to extinction was attributed solely to biased sex ratio.     

VALUING ECOSYSTEM SERVICES OF CHILEAN TEMPERATE RAINFORESTS

The Valdivian Rainforest Ecoregion (35°–48° S) in southern South America is among the ecosystems with highest conservation priority worldwide due to its rich diversity, degree of endemism, and critical conservation status. Temperate rainforests in this vast area are essential as source of biological resources and to maintain different ecosystem services which remain largely unmeasured and unvalued. Consequently, the benefits they provide are not reflected in decision-making regarding forest management and conservation. Based on existing studies and results from ongoing research we describe selected ecosystem services and provide estimates of their economic value. Timber benefits for secondary forests expressed as net present stumpage values were US$ 3742 ha⁻¹ and US$ 3093 ha⁻¹ for sustainable forest management (SFM) and unsustainable harvesting, respectively. Timber benefits for old growth forests␣equaled US$ 4546 ha⁻¹ and US$ 5718 ha⁻¹, for SFM and unsustainable harvesting, respectively, using an 8% discount rate. Annual benefits from recreation were US$ 1.6 ha⁻¹ and US$ 6.3 ha⁻¹ for the two most important national parks located in the study area. The annual value of maintaining soil fertility was US$ 26.3 ha⁻¹ using the replacement cost of nutrient losses due to soil erosion. The annual economic value of water supply for human consumption using the production function method was US$ 235 ha⁻¹. These results provide valuable information on the kind and magnitude of values that could be relevant in decision-making concerning conservation and management of native forests in the Valdivian Rainforest Ecoregion.     

Relative Contribution of Inbreeding Depression and Eroded Adaptive Diversity to Extinction Risk in Small Populations of Shore Campion

Abstract:  To study the relative importance of inbreeding depression and the loss of adaptive diversity in determining the extinction risk of small populations, we carried out an experiment in which we crossed and self-fertilized founder plants from a single, large population of shore campion ( Silene littorea Brot.). We used the seeds these plants produced to colonize 18 new locations within the distribution area of the species. The reintroduced populations were of three kinds: inbred and genetically homogeneous, each made up of selfed seed from a single plant; inbred and mixed, made up of a mixture of selfed seeds from all founder plants; and outbred and mixed, made up of a mixture of seeds obtained in outcrosses between the founders. We compared the inbred homogeneous populations with the inbred mixed to measure the effect of genetic diversity among individuals and the inbred mixed with the outbred mixed to measure the effect of inbreeding. Reintroduction success was seriously limited by inbreeding, whereas it was not affected by genetic diversity. This observation and the nonsignificant interaction between family and reintroduction location for individual plant characters suggest that the fixation of overall deleterious genes causing inbreeding depression posed a more serious threat to the short-term survival of the populations than the loss of genes involved in genotype and environment interactions. Thus, reintroduction success was related to adaptive diversity. Preventing such fixation might be the most important consideration in the genetic management and conservation of shore campion populations.