Modelling skewed data with many zeros: A simple approach combining ordinary and logistic regression

We discuss a method for analyzing data that are positively skewed and contain a substantial proportion of zeros. Such data commonly arise in ecological applications, when the focus is on the abundance of a species. The form of the distribution is then due to the patchy nature of the environment and/or the inherent heterogeneity of the species. The method can be used whenever we wish to model the data as a response variable in terms of one or more explanatory variables. The analysis consists of three stages. The first involves creating two sets of data from the original: one shows whether or not the species is present; the other indicates the logarithm of the abundance when it is present. These are referred to as the presence data and the log-abundance data, respectively. The second stage involves modelling the presence data using logistic regression, and separately modelling the log-abundance data using ordinary regression. Finally, the third stage involves combining the two models in order to estimate the expected abundance for a specific set of values of the explanatory variables. A common approach to analyzing this sort of data is to use a ln (y+c) transformation, where c is some constant (usually one). The method we use here avoids the need for an arbitrary choice of the value of c, and allows the modelling to be carried out in a natural and straightforward manner, using well-known regression techniques. The approach we put forward is not original, having been used in both conservation biology and fisheries. Our objectives in this paper are to (a) promote the application of this approach in a wide range of settings and (b) suggest that parametric bootstrapping be used to provide confidence limits for the estimate of expected abundance.     

Site-Specific Characterization of Castromil Brownfield Area Related to Gold Mining Activities

Castromil is one of the gold mining areas in Portugal that has been abandoned since 1940. This area, which was first mined in Roman times, is located within a Hercynian granite body near the contact with Silurian metasediments. Gold is essentially disseminated along veins in the silicified granite, running NW-SE, related with a shear zone and frequently associated with sulphides (arsenopyrite and basically pyrite). In paragenetic terms, three stages of mineralization are considered: ferro-arseniferous (quartz + arsenopyrite I + pyrite I + pyrrhotite + bismuth), zinciferous (sphalerite + chalcopyrite), and remobilization (arsenopyrite II + galena + gold). Due to the lack of laws and environmental education, Castromil is today a gold mining heritage site where we can detect the consequences of an incautious exploration (tailings, wells and adits located in the old explored zone) and where a residential area is located. In order to characterize the actual state of the old mining area the trace metal contamination of soils and waters by mining activities was investigated. In the studied area 106 soil samples, 15 waters and 20 plants were sampled and analysed. The soil samples were analysed for 32 elements by ICP-AES. Waters were analysed by ionic chromatography and ICP-MS for major and trace elements. Plants were analysed for As, Fe and Pb by AAS. The results are discussed taking into account the risk-based standards for soils and groundwater's (target and intervention values) proposed by Swartjes (1999). The results show elevated concentration of As and Pb which were found in soils collected from agricultural areas. Foodstuff plants species collected in the Castromil agricultural area show high concentrations of As in the leaves (cabbage and lettuce) and in the tubers (potatoes). Groundwaters in the mining area contain high concentrations of As that exceeds the intervention values. The area must to be subject to a remediation process, considering the actual risks to humans and ecosystems and the risks due to contaminant migration.     

The use of Microtox to assess toxicity removal of industrial effluents from the industrial district of Camaçari (BA, Brazil)

The treatment efficiency, as toxicity removal, of complex effluents from the Industrial District of Cama?ari (BA, Brazil), after biological treatment with activated sludge was evaluated using Microtox. Samples of the equalised effluent (EE) were collected prior to treatment together with samples of the treated effluent (TE), which remained 24 h in the treatment plant. Rehydrated colonies of Vibrio fischeri were exposed to sequential dilutions of EE and TE to assess luminosity interference. Values for EC50 were calculated, together with the respective toxicity units. In all, twenty assays of each effluent type were carried out and the mean toxicity removal was 92.71%, while the chemical oxygen demand (COD) presented mean reduction of 83.04%. There was a variability of an order of magnitude between the Microtox results for the two types of effluents. The mean EC50 values were 2.12 for EE and 47.78% for TE. In spite of its weakness in some conditions, the Microtox system demonstrated to work adequately in assessing effluent toxicity removal in this treatment plant and therefore can be used for further toxicity removal programs.     

Cadmium,zinc and total mercury levels in the tissues of several fish species from La Plata river estuary,Argentina

A survey of the concentrations of heavy metals — cadmium, zinc and total mercury — in the tissues of fifteen fish species from Samborombón Bay, La Plata river estuary, in Argentina, has been carried out. Liver appeared to be the main organ accumulating cadmium and zinc, while both liver and muscle showed a similar ability for accumulating mercury. The bioaccumulation process was verified for the three metals analyzed, even though low concentrations have been determined. The biomagnification process of the metals studied was not verified in this environment. The highest metal concentrations were recorded in Mugil liza, and particulate matter and sediments — which are closely related to its trophic and ecological habits — seemed to be the main source of metals for this species. Both Micropogonias furnieri and Mugil liza were recognized as possible indicator species for future monitoring programmes for heavy metals in Samborombón Bay. Considering the present results, this area of La Plata river estuary is characterized as a non-polluted environment.Scientific Researcher from the National Council for Scientific and Technological Researches (CONICET), of Argentina     

Integrating geochemical (surface waters, stream sediments) and biological (diatoms) approaches to assess AMD environmental impact in a pyritic mining area: Aljustrel (Alentejo, Portugal)

Aljustrel mines were classified as having high environmental hazard due to their large tailings volume and high metal concentrations in waters and sediments.To assess acid mine drainage impacted systems whose environmental conditions change quickly,the use of biological indicators with short generation time such as diatoms is advantageous.This study combined geochemical and diatom data,whose results were highlighted in 3 groups:Group 1,with low p H(1.9–5.1)and high metal/metalloid(Al,As,Cd,Co,Cu,Fe,Mn,Ni,Pb,Zn;0.65–1032 mg/L)and SO_4(405–39124 mg/L)concentrations.An acidophilic species,Pinnularia aljustrelica,was perfectly adapted to the adverse conditions;in contrast,teratological forms of Eunotia exigua were found,showing that metal toxicity affected this species.The low availability of metals/metalloids in sediments of this group indicates that metals/metalloids of the exchangeable fractions had been solubilized,which in fact enables metal/metalloid diatom uptake and consequently the occurrence of teratologies;Group 2,with sites of near neutral p H(5.0–6.8)and intermediate metal/metalloid(0.002–6 mg/L)and SO_4(302–2179 mg/L)concentrations;this enabled the existence of typical species of uncontaminated streams(Brachysira neglectissima,Achnanthidium minutissimum);Group 3,with samples from unimpacted sites,showing low metal/metalloid(0–0.8 mg/L)and SO_4(10–315 mg/L)concentrations,high pH(7.0–8.4)and Cl contents(10–2119 mg/L)and the presence of brackish to marine species(Entomoneis paludosa).For similar conditions of acidity,differences in diversity,abundance and teratologies of diatoms can be explained by the levels of metals/metalloids.     

Effects of customized foot orthoses on manufacturing workers in the metal industry

This 8-week study evaluates the effects of customized foot orthoses on work-related musculoskeletal disorders (WMSDs) of metal industry workers. These WMSDs were evaluated applying the Nordic musculoskeletal questionnaire (NMQ) at three different times (start, 4th week and 8th week) and additional questions were also formulated to obtain information about adaptation, fatigue, comfort and possible improvements. According to the NMQ results, statistical significance was found in the improvements after 4?weeks (p?<?0.05 in two areas, p?<?0.01 in three areas, p?<?0.001 in two areas and no significance in the other two) and after 8?weeks (p?<?0.01 in three areas, p?<?0.001 in four areas and no significance in the other two). The additional questions indicated fatigue reduction (both in general and in lower extremity), comfort level increase (after the adaptation period) and good acceptance, according to workers’ answers, suggesting customized orthoses can be effective in reducing and preventing WMSDs in several body regions.     

Joining sheet panels to thin-walled tubular profiles by tube end forming

This paper is focused on novel utilizations of the fundamental modes of deformation of tube end forming for assembling sheet panels to thin-walled tubular profiles.The objective is to present an innovative and environmental friendly joining technology built upon the combination of compression beading with tube inversion that can successfully eliminate currently available technologies based on mechanical fixing with fasteners, welding and structural adhesive bonding. The technology works at room temperature, is capable of ensuring significant economic and time savings and offers potential for opening new markets for the assembly of lightweight frame structures.The presentation is supported by experimentation and numerical modelling based on independently determined mechanical properties of the materials with the purpose of characterizing and evaluating the process feasibility limits as a function of the major operative parameters.The feasibility of joining sheet panels to tubular profiles by means of the proposed technology is demonstrated by presenting industrial applications and by evaluating the performance of a safety auto part in an operation failure test.     

The Relationship between “Soiling Index” and Suspended Particulate Matter Concentrations

Experimental relationships between the mass concentration of suspended particulate matter and the optical density of particulates collected on paper tape have been determined for the atmospheric aerosol and for aerosols of constant optical properties. Simultaneous samples were obtained on membrane filters (for gravimetric analysis) and on Whatman No. 4 paper tape (for optical evaluation). Sampling procedures were adopted which ensured that the efficiency of sampling was the same in both cases.

Consistent relationships between mass concentrations of suspended particulate matter and optical density expressed in terms of per cent transmittance or per cent reflectance were found for dispersions of coal, limestone, fly ash, and a coal-limestone mixture.

For atmospheric aerosol samples collected on the roof of the Graduate School of Public Health, University of Pittsburgh, the relationship between mass concentration and per cent transmittance or per cent reflectance was found to be linear over the range of values observed. The correlation coefficients were ?0.93 (for concentration versus per cent transmittance) and ?0.89 (for concentration versus per cent reflectance).     

Using forest historical information to target landscape ecological restoration in Southwestern Patagonia

Ambio - Ecotonal zones between eastern semi-arid steppes and Nothofagus spp. forests in western Patagonia are the result of broad ecosystem changes, which have intensified in the last...     

Methods to prepare biosorbents and magnetic sorbents for water treatment: a review

Access to drinkable water is becoming more and more challenging due to worldwide pollution and the cost of water treatments. Water and wastewater treatment by adsorption on solid materials is usually cheap and effective in removing contaminants, yet classical adsorbents are not sustainable because they are derived from fossil fuels, and they can induce secondary pollution. Therefore, biological sorbents made of modern biomass are increasingly studied as promising alternatives. Indeed, such biosorbents utilize biological waste that would otherwise pollute water systems, and they promote the circular economy. Here we review biosorbents, magnetic sorbents, and other cost-effective sorbents with emphasis on preparation methods, adsorbents types, adsorption mechanisms, and regeneration of spent adsorbents. Biosorbents are prepared from a wide range of materials, including wood, bacteria, algae, herbaceous materials, agricultural waste, and animal waste. Commonly removed contaminants comprise dyes, heavy metals, radionuclides, pharmaceuticals, and personal care products. Preparation methods include coprecipitation, thermal decomposition, microwave irradiation, chemical reduction, micro-emulsion, and arc discharge. Adsorbents can be classified into activated carbon, biochar, lignocellulosic waste, clays, zeolites, peat, and humic soils. We detail adsorption isotherms and kinetics. Regeneration methods comprise thermal and chemical regeneration and supercritical fluid desorption. We also discuss exhausted adsorbent management and disposal. We found that agro-waste biosorbents can remove up to 68–100% of dyes, while wooden, herbaceous, bacterial, and marine-based biosorbents can remove up to 55–99% of heavy metals. Animal waste-based biosorbents can remove 1–99% of heavy metals. The average removal efficiency of modified biosorbents is around 90–95%, but some treatments, such as cross-linked beads, may negatively affect their efficiency.