Inferring Metapopulation Dynamics from Patch-Level Incidence of Florida Scrub Plants

Spatial structure and dynamics of multiple populations may explain species distribution patterns in patchy communities with heterogeneous disturbance regimes, especially when species have poor dispersal. The endemic-rich Florida (U.S.A.) rosemary scrub occupies about 4% of the west portion of Archbold Biological Station and occurs scattered within a matrix of less xeric vegetation. Longer fire-return times and higher frequency of open patches in rosemary scrub provide favorable habitat for many plant species. Occupancy of 123 species of vascular plants and ground lichens in 89 patches was determined by repeated site surveys. About two-thirds of the species occurring at more than 14 patches had a significant logistic regression of presence on time-since-fire, patch size, patch isolation, or their interactions. Species with presence related to the interaction between patch isolation and patch size were primarily herbs and small shrubs specializing in rosemary scrub. These results suggest the importance of spatial characteristics of the landscape for population turnover of these species. An incidence-based metapopulation model was used to predict extinction and colonization probabilities of those species with presence in rosemary scrub patches related to the studied spatial variables. This is the first attempt to apply incidence-based metapopulation models to plants. The results showed stronger effects of patch size and patch isolation on extinction probabilities of herbs than on those of woody species. Because of their effect on spatial heterogeneity and habitat availability, fire suppression and habitat destruction may decrease persistence probabilities for these rosemary scrub specialists, many of which are endangered species.     

Publishing science without results and recycling research

Most scientists focus too much on publishing original articles. In doing so, scientists are restricting their writing skills to this form of highly specialised publication, which is poorly readable by scientists from other disciplines. In the context of rising interdisciplinary research and data abundance, there is a need for more publications that recycle existing research and communicate to a wider audience. Therefore, I present here five types of publications that do not require additional experiments, namely reviews, methods, data papers, meta-analyses and videos. Benefits include more citations, larger visibility, wider dissemination, easier job finding, grant success and better recycling of research.     

Cyclodextrin-based supramolecular assemblies: a versatile toolbox for the preparation of functional porous materials

The discovery of ordered mesoporous materials in 1992 by Mobil Oil Corporation scientists has opened great opportunities for new applications in many emerging fields such as heterogeneous catalysis, biocatalysis, energy conversion, biosensors, photocatalytic devices and environmental technologies. Porous materials are grouped by the International Union of Pure and Applied Chemistry (IUPAC) into three classes according to their pore diameter: microporous (<?2 nm), mesoporous (2–50 nm) and macroporous (>?50 nm). One of the most versatile methods for the preparation of those materials is the soft template approach which combines the sol–gel process with molecular self-assembly. While the micelles formed by ionic or nonionic surfactants, as well as amphiphilic polymers, have been extensively used as templates, the supramolecular assemblies formed between cyclodextrins and block copolymers have been less investigated, despite their large chemical and structural diversity. This review article focuses mainly on nanostructured porous inorganic materials derived from cyclodextrins or cyclodextrin-based assemblies. More than 100 references are described and discussed, in which we look both at their synthesis and characterization, as well as their applications in the emerging fields of heterogeneous catalysis and photocatalysis. A special attention is paid to the evaluation of the critical parameters that need to be controlled for improving their (photo) catalytic performances.     

Simulations of the flow in the Mahakam river–lake–delta system,Indonesia

Large rivers often present a river–lake–delta system, with a wide range of temporal and spatial scales of the flow due to the combined effects of human activities and various natural factors, e.g., river discharge, tides, climatic variability, droughts, floods. Numerical models that allow for simulating the flow in these river–lake–delta systems are essential to study them and predict their evolution under the impact of various forcings. This is because they provide information that cannot be easily measured with sufficient temporal and spatial detail. In this study, we combine one-dimensional sectional-averaged (1D) and two-dimensional depth-averaged (2D) models, in the framework of the finite element model SLIM, to simulate the flow in the Mahakam river–lake–delta system (Indonesia). The 1D model representing the Mahakam River and four tributaries is coupled to the 2D unstructured mesh model implemented on the Mahakam Delta, the adjacent Makassar Strait, and three lakes in the central part of the river catchment. Using observations of water elevation at five stations, the bottom friction for river and tributaries, lakes, delta, and adjacent coastal zone is calibrated. Next, the model is validated using another period of observations of water elevation, flow velocity, and water discharge at various stations. Several criteria are implemented to assess the quality of the simulations, and a good agreement between simulations and observations is achieved in both calibration and validation stages. Different aspects of the flow, i.e., the division of water at two bifurcations in the delta, the effects of the lakes on the flow in the lower part of the system, the area of tidal propagation, are also quantified and discussed.     

Control of invasive rats on islands and priorities for future action

Invasive rats are one of the world's most successful animal groups that cause native species extinctions and ecosystem change, particularly on islands. On large islands, rat eradication is often impossible and population control, defined as the local limitation of rat abundance, is now routinely performed on many of the world's islands as an alternative management tool. However, a synthesis of the motivations, techniques, costs, and outcomes of such rat‐control projects is lacking. We reviewed the literature, searched relevant websites, and conducted a survey via a questionnaire to synthesize the available information on rat‐control projects in island natural areas worldwide to improve rat management and native species conservation. Data were collected from 136 projects conducted over the last 40 years; most were located in Australasia (46%) and the tropical Pacific (25%) in forest ecosystems (65%) and coastal strands (22%). Most of the projects targeted Rattus rattus and most (82%) were aimed at protecting birds and endangered ecosystems. Poisoning (35%) and a combination of trapping and poisoning (42%) were the most common methods. Poisoning allows for treatment of larger areas, and poison projects generally last longer than trapping projects. Second‐generation anticoagulants (mainly brodifacoum and bromadiolone) were used most often. The median annual cost for rat‐control projects was US$17,262 or US$227/ha. Median project duration was 4 years. For 58% of the projects, rat population reduction was reported, and 51% of projects showed evidence of positive effects on biodiversity. Our data were from few countries, revealing the need to expand rat‐control distribution especially in some biodiversity hotspots. Improvement in control methods is needed as is regular monitoring to assess short‐ and long‐term effectiveness of rat‐control.     

Does the African social spider Stegodyphus dumicola control the sex of individual offspring?

By scoring the chromosome number of developing embryos, we show that the sex ratio bias of the African social spider Stegodyphus dumicola Pocock is the result of an overproduction of female embryos. Only 17% of 585 embryos sexed from 14 egg sacs were male, a significant departure from a 1:1 sex ratio. We also explored the possibility of direct control of the sex of individual offspring in this species by examining the variance in the number of males per sac and the spatial distribution of male and female embryos within the sacs. We postulated that a variance in the number of males per sac lower than binomial (i.e., underdispersed or precise sex ratios) or a non-random distribution of male embryos within the sacs would suggest direct control of the sex of individual offspring. We found that the variance in the number of males per sac was indistinguishable from binomial and significantly larger than expected under exact ratios. Likewise, the spatial distribution of male embryos within three sacs examined was no more clustered than expected by chance. The sex ratio biasing mechanism in this species, therefore, apparently only allows control of the mean sex ratio but not of its variance. We present randomization and Monte Carlo methods that can be applied to test for departures from a random spatial arrangement of male and female embryos in an egg mass and for departures from binomial or exact ratios when not all members of a clutch have been sexed. Received: 21 October 1998 / Received in revised form: 23 March 1999 / Accepted: 26 April 1999     

Dispersal connectivity and reserve selection for marine conservation

Although larval dispersal is crucial for the persistence of most marine populations, dispersal connectivity between sites is rarely considered in designing marine protected area networks. In particular the role of structural characteristics (known as topology) for the network of larval dispersal routes in the conservation of metapopulations has not been addressed. To determine reserve site configurations that provide highest persistence values with respect to their connectivity characteristics, we model nine connectivity topological models derived from graph theory in a demographic metapopulation model. We identify reserve site configurations that provide the highest persistence values for each of the metapopulation connectivity models. Except for the minimally connected and fully connected populations, we observed two general ‘rules of thumb’ for optimising the mean life time for all topological models: firstly place the majority of reserves, so that they are neighbours of each other, on the sites where the number of connections between the populations is highest (hub), secondly when the reserves have occupied the majority of the vertices in the hub, then select another area of high connectivity and repeat. If there are no suitable hubs remaining then distribute the remaining reserves to isolated locations optimising contact with non-reserved sites.     

Modelling the fate of marine turtle hatchlings

The SLIM oceanographic model was used to examine the fate of hatchling flatback turtles (Natator depressus) in the first two weeks of their dispersal starting at Wild Duck Island, a major turtle-nesting site in the central Great Barrier Reef region of Australia. We ran simulations to investigate the effects of spring versus neap tides, hatchling's swimming behaviour during their first three days at sea, and the location of nesting beaches. The model predicted that up to 50% of the turtle hatchlings entering the sea from the windward, southern beach remained after 14 days in shallow, nearshore waters, irrespective of tides and swimming. These waters are turbid and may be inhospitable to hatchlings. In contrast >80% of hatchlings dispersing from the leeward, northern beach were dispersed to deeper water (10-40 m) in a quasi-stationary dispersion core centred around 10 km north of the nesting beach after 14 days and the offshore spread of the turtle plume was enhanced by the hatchling's seaward swimming during the first three days. This was due to the presence of a coastal boundary layer and a stagnation zone around the northern side of island, but not the southern side. The model confirmed that dispersal from eastern Queensland flatback turtle rookeries is restricted to the lagoons and coastal waters, and that water circulation and hatchling's swimming control dispersion. The model explains why more turtles nest on the northern than the southern side. This study highlights the usefulness of oceanographic models to increase knowledge about a cryptic life stage of marine turtles.