Spatial and Temporal Patterns in Fish Assemblages Following an Artificially Extended Floodplain Inundation Event, Northern Murray-Darling Basin, Australia

Water extraction from dryland rivers is often associated with declines in the health of river and floodplain ecosystems due to reduced flooding frequency and extent of floodplain inundation. Following moderate flooding in early 2008 in the Narran River, Murray-Darling Basin, Australia, 10,423 ML of water was purchased from agricultural water users and delivered to the river to prolong inundation of its terminal lake system to improve the recruitment success of colonial waterbirds that had started breeding in response to the initial flooding. This study examined the spatial and temporal patterns of fish assemblages in river and floodplain habitats over eight months following flooding to assess the possible ecological benefits of flood extension. Although the abundances of most fish species were greater in river channel habitats, the fish assemblage used floodplain habitats when inundated. Young-of-the-year (4–12 months age) golden perch (Macquaria ambigua) and bony bream (Nematalosa erebi) were consistently sampled in floodplain sites when inundated, suggesting that the floodplain provides rearing habitat for these species. Significant differences in the abundances of fish populations between reaches upstream and downstream of a weir in the main river channel indicates that the effectiveness of the environmental water release was limited by restricted connectivity within the broader catchment. Although the seasonal timing of flood extension may have coincided with sub-optimal primary production, the use of the environmental water purchase is likely to have promoted recruitment of fish populations by providing greater access to floodplain nursery habitats, thereby improving the ability to persist during years of little or no flow.     

Assessing the Response of Estuarine Intertidal Assemblages to Urbanised Catchment Discharge

Measurement of intertidal rock assemblages was investigated as a potential biological indicator to provide a quantitative estimate of the impact of urbanised catchment discharge on the estuaries of Sydney, Australia, from 1995 to 1999. Based on the presence and characteristics of adjacent human activities, sampling locations were categorised as: Bush; Urban; Urban with Sewer Overflows; and Industry with Sewer Overflows. In Sydney Harbour, variation in assemblage structure was measured between most impact categories, however differences between impact categories were not consistent for each year. Nevertheless, in years of above average rainfall (1998–1999), reference assemblages adjacent to national parks and distant from urbanisation were different to all other putatively impacted assemblages. Variability within assemblages was least at reference locations in each year and greatest at locations adjacent to stormwater canals and sewer overflows, particularly in 1998–1999. Variation in assemblage structure in Sydney estuaries was most strongly correlated with chlorophyll – a concentrations. Univariate analysis also identified highly significant differences for a number of factors, however, interactions between year, impact categories and location for numerous analyses, confounded the differentiation between impact categories. The results suggest that intertidal rock assemblages in Sydney Harbour and surrounding estuaries appear to be responding to the quality and quantity of discharge from urbanised catchments and, furthermore, that assemblages are more suitable than individual taxa to indicate the difference between Bush and anthropogenically disturbed estuarine locations.     

Management of adverse effects of a public water supply well field on the aquatic habitat of a stratified drift stream in eastern Connecticut.

A study was conducted to determine the effect of water withdrawals from the University of Connecticut's (Storrs) water supply wells on the fisheries habitat of the Fenton River adjacent to the well field. The study was designed to investigate the relationships between in-stream flow and selected fish habitat in the section of the Fenton River situated in the main zone of influence of the pumping field. With the aid of historical data, new data collection, and mathematical simulation modeling, the relation between the magnitude and timing of groundwater withdrawals on the stage and flow of water in the stream was derived. Fish sampling and habitat modeling were used to assess the effects of human influence on certain reaches of the Fenton River. Among the various water management scenarios studied, several are presented that would optimize water withdrawals, while minimizing adverse effects on the stream flow and in-stream habitat.     

The conversion of chicken manure to biooil by fast pyrolysis I. Analyses of chicken manure, biooils and char by 13C and 1H NMR and FTIR spectrophotometry

Fast pyrolysis of chicken manure produced two biooils (Fractions I and II) and a residual char. All four materials were analyzed by chemical methods, 13C and 1H Nuclear Magnetic Resonance Spectrometry (13C and 1H NMR), and Fourier Transform Infrared Spectrosphotometry (FTIR). The char showed the highest C content and the highest aromaticity. Of the two biooils Fraction II was higher in C, yield and calorific value but lower in N than Fraction I. The S and ash content of the two biooil fractions were low. The Cross Polarization Magic Angle Spinning (CP-MAS) 13C NMR spectrum of the initial chicken manure showed it to be rich in cellulose, which was a major component of sawdust used as bedding material. Nuclear Magnetic Resonance (NMR) spectra of the two biooils indicated that Fraction I was less aromatic than Fraction II. Among the aromatics in the two biooils, we were able to tentatively identify N-heterocyclics like indoles, pyridines, and pyrazines. FTIR spectra were generally in agreement with the NMR data. FTIR spectra of both biooils showed the presence of both primary and secondary amides and primary amines as well as N-heterocyclics such as pyridines, quinolines, and pyrimidines. The FTIR spectrum of the char resembled that of the initial chicken manure except that the concentration of carbohydrates was lower.     

The spatial links tool: Automated mapping of habitat linkages in variegated landscapes

The removal, alteration and fragmentation of habitat in many parts of the world has led to a loss of biodiversity. Within the prevailing societal limitations the process is not easily reversed. Attempts are being made to minimise the fragmentation of remaining habitat by strategically reversing or managing habitat loss. Although their relative usefulness is a topic of debate among ecologists, habitat corridors are seen as one way of maintaining spatially dependent ecological processes within landscapes where habitat has been seriously depleted. Corridors can only be effective if they significantly contribute to the species sustaining processes of gene flow, resource access or the colonisation of vacant patches. We present a spatial habitat modelling methodology for evaluating the contribution and potential contribution of connecting paths to landscape connectivity. We have developed the spatial links tool (SLT), which maps link value across a region. The SLT combines connectivity measures from metapopulation ecology with the least cost path algorithm from graph theory, and can be applied to continuously variable landscape data. Combined with expert judgement, link value maps can be used to delineate habitat corridors. The approach capitalises on some synergies between ecological relevance and computational efficiency to produce an easily applied heuristic tool that has been successfully applied in NSW Australia.     

Boosted trees for ecological modeling and prediction

Accurate prediction and explanation are fundamental objectives of statistical analysis, yet they seldom coincide. Boosted trees are a statistical learning method that attains both of these objectives for regression and classification analyses. They can deal with many types of response variables (numeric, categorical, and censored), loss functions (Gaussian, binomial, Poisson, and robust), and predictors (numeric, categorical). Interactions between predictors can also be quantified and visualized. The theory underpinning boosted trees is presented, together with interpretive techniques. A new form of boosted trees, namely, "aggregated boosted trees" (ABT), is proposed and, in a simulation study, is shown to reduce prediction error relative to boosted trees. A regression data set is analyzed using ABT to illustrate the technique and to compare it with other methods, including boosted trees, bagged trees, random forests, and generalized additive models. A software package for ABT analysis using the R software environment is included in the Appendices together with worked examples.     

Larval settlement and metamorphosis of the mussel <Emphasis Type="Italic">Mytilus galloprovincialis</Emphasis> in response to biofilms

Biofilms were allowed to develop on glass slips immersed 1.0–1.5 m below the sea surface in Tachibana Bay, Nagasaki, Japan, for different periods of time from November 2003 to January 2005. The effects of age, immersion month, dry weight, bacterial and diatom densities of these biofilms on the settlement and metamorphosis of pediveliger larvae of the mussel Mytilus galloprovincialis were investigated in the laboratory. Furthermore, biofilms were subjected to various treatments to investigate the nature of the settlement and metamorphosis cue in the biofilm. Pediveliger larvae of the mussel settled and metamorphosed in response to biofilms. Settlement and metamorphosis to the post-larval stage significantly increased with the biofilm age. In addition, the biofilm activity varied depending on the immersion month (season), e.g., for biofilms with the same age, those immersed between June and August had higher activities than those immersed between November and March. The activity of the biofilm also positively correlated with the dry weight, bacterial and diatom densities. These three quantitative parameters of the biofilm were significantly affected by the film age but were not affected by the immersion month, suggesting that other parameters (e.g., community structures, extracellular products) also affected the inductive activity of the biofilm. The fixative agents (formalin and glutaraldehyde), heat, ethanol, ultraviolet irradiation and antibiotics treatments of the biofilm resulted in significant reduction or loss of its inductive activity. The survival of bacterial cells in the treated films where activities were either reduced or lost also decreased significantly. No settlement and metamorphosis were obtained when larvae were exposed to the conditioned water of the biofilm. Thus, larvae of M. galloprovincialis settled and metamorphosed in response to a cue produced by living bacteria in the biofilm. The cue may be a bacterial extracellular product which was susceptible to the above treatments.     

Dynamic floodplain vegetation model development for the Kootenai River, USA

The Kootenai River floodplain in Idaho, USA, is nearly disconnected from its main channel due to levee construction and the operation of Libby Dam since 1972. The decreases in flood frequency and magnitude combined with the river modification have changed the physical processes and the dynamics of floodplain vegetation. This research describes the concept, methodologies and simulated results of the rule-based dynamic floodplain vegetation model "CASiMiR-vegetation" that is used to simulate the effect of hydrological alteration on vegetation dynamics. The vegetation dynamics are simulated based on existing theory but adapted to observed field data on the Kootenai River. The model simulates the changing vegetation patterns on an annual basis from an initial condition based on spatially distributed physical parameters such as shear stress, flood duration and height-over-base flow level. The model was calibrated and the robustness of the model was analyzed. The hydrodynamic (HD) models were used to simulate relevant physical processes representing historic, pre-dam, and post-dam conditions from different representative hydrographs. The general concept of the vegetation model is that a vegetation community will be recycled if the magnitude of a relevant physical parameter is greater than the threshold value for specific vegetation; otherwise, succession will take place toward maturation stage. The overall accuracy and agreement Kappa between simulated and field observed maps were low considering individual vegetation types in both calibration and validation areas. Overall accuracy (42% and 58%) and agreement between maps (0.18 and 0.27) increased notably when individual vegetation types were merged into vegetation phases in both calibration and validation areas, respectively. The area balance approach was used to analyze the proportion of area occupied by different vegetation phases in the simulated and observed map. The result showed the impact of the river modification and hydrological alteration on the floodplain vegetation. The spatially distributed vegetation model developed in this study is a step forward in modeling riparian vegetation succession and can be used for operational loss assessment, and river and floodplain restoration projects.