Genomic erosion in a demographically recovered bird species during conservation rescue

The pink pigeon (Nesoenas mayeri) is an endemic species of Mauritius that has made a remarkable recovery after a severe population bottleneck in the 1970s to early 1990s. Prior to this bottleneck, an ex situ population was established from which captive-bred individuals were released into free-living subpopulations to increase population size and genetic variation. This conservation rescue led to rapid population recovery to 400–480 individuals, and the species was twice downlisted on the International Union for the Conservation of Nature (IUCN) Red List. We analyzed the impacts of the bottleneck and genetic rescue on neutral genetic variation during and after population recovery (1993–2008) with restriction site-associated sequencing, microsatellite analyses, and quantitative genetic analysis of studbook data of 1112 birds from zoos in Europe and the United States. We used computer simulations to study the predicted changes in genetic variation and population viability from the past into the future. Genetic variation declined rapidly, despite the population rebound, and the effective population size was approximately an order of magnitude smaller than census size. The species carried a high genetic load of circa 15 lethal equivalents for longevity. Our computer simulations predicted continued inbreeding will likely result in increased expression of deleterious mutations (i.e., a high realized load) and severe inbreeding depression. Without continued conservation actions, it is likely that the pink pigeon will go extinct in the wild within 100 years. Conservation rescue of the pink pigeon has been instrumental in the recovery of the free-living population. However, further genetic rescue with captive-bred birds from zoos is required to recover lost variation, reduce expression of harmful deleterious variation, and prevent extinction. The use of genomics and modeling data can inform IUCN assessments of the viability and extinction risk of species, and it helps in assessments of the conservation dependency of populations.     

Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program

The effectiveness of environmental protection measures is based on the early identification and diagnosis of anthropogenic pressures. Similarly, restoration actions require precise monitoring of changes in the ecological quality of ecosystems, in order to highlight their effectiveness. Monitoring the ecological quality relies on bioindicators, which are organisms revealing the pressures exerted on the environment through the composition of their communities. Their implementation, based on the morphological identification of species, is expensive because it requires time and experts in taxonomy. Recent genomic tools should provide access to reliable and high-throughput environmental monitoring by directly inferring the composition of bioindicators’ communities from their DNA (metabarcoding). The French-Swiss program SYNAQUA (INTERREG France-Switzerland 2017–2019) proposes to use and validate the tools of environmental genomic for biomonitoring and aims ultimately at their implementation in the regulatory bio-surveillance. SYNAQUA will test the metabarcoding approach focusing on two bioindicators, diatoms, and aquatic oligochaetes, which are used in freshwater biomonitoring in France and Switzerland. To go towards the renewal of current biomonitoring practices, SYNAQUA will (1) bring together different actors: scientists, environmental managers, consulting firms, and biotechnological companies, (2) apply this approach on a large scale to demonstrate its relevance, (3) propose robust and reliable tools, and (4) raise public awareness and train the various actors likely to use these new tools. Biomonitoring approaches based on such environmental genomic tools should address the European need for reliable, higher-throughput monitoring to improve the protection of aquatic environments under multiple pressures, guide their restoration, and follow their evolution.     

Glyphosate concentrations in global freshwaters: are aquatic organisms at risk?

Environmental Science and Pollution Research - Glyphosate is the most used herbicide worldwide. Many studies have reported glyphosate risks to aquatic organisms of different trophic levels....     

The use of polymer compounds in the deposits from the combustion of briquettes in domestic heating as an identifier of fuel quality

Environmental Science and Pollution Research - The utilisation of waste wood from furniture production brings new problems connected with an incomplete thermochemical decomposition of additives...     

Presence of metals in drinking water distribution networks due to pipe material leaching: a review

Drinking water quality should remain constant from the drinking water treatment plant to the consumer's tap. However, water quality characteristics might be affected by interactions with pipe materials. This review describes the iron, copper, lead, zinc, aluminum, chromium, and cadmium in drinking water leached from the pipe material present in drinking water, as well as the factors and mechanisms that affect leaching processes. Data analysis suggests that monitoring the water quality in distribution systems is important for their proper management; however, the low measured concentrations highlight the need for sensitive sensors. In addition, further research is necessary to anticipate possible future effects before the installation of new materials/infrastructure or changes in water source/treatment.     

Antagonism and synergism between lead and zinc in amphibian larvae

Lead and zinc effects on Bufo arenarum larval survival were studied in single and combined treatments. On a weight basis, lead is about twice as toxic as zinc. The antagonism or synergism between these heavy metals is dose-dependent.     

Complex national sampling design for long-term monitoring of protected dry grasslands in Switzerland

We describe a probabilistic sampling design of circular permanent plots for the long-term monitoring of protected dry grasslands in Switzerland. The population under study is defined by the perimeter of a national inventory. The monitoring focus is on the species composition of the protected grassland vegetation and derived conservation values. Efficient trend estimations are required for the whole country and for some predefined target groups (six biogeographical regions and eleven vegetation types). The target groups are equally important regardless of their size. Consequently, intensified sampling of the less frequent groups is essential for sample efficiency. The prior information needed to draw a targeted sample is obtained from the sampling frame and external databases. The logistics and generalized delineation of the target population may pose further problems. Thus, investments in fieldwork and travel time should be well balanced by selecting a cluster sample. Second, any access problems in the field and non-target units in the sample should be compensated for by selecting reserve plots as they otherwise may considerably reduce the effective sample size. Finally, the design has to be flexible as the sampling frame may change over time and sampling intensity might have to be adjusted to redefined budgets or requirements. Likewise, the variables and biological items of interest may change. To fulfil all these constraints and to optimally use the available prior information, we propose a multi-stage self-weighted unequal probability sampling design. The design uses modern techniques such as: balanced sampling, spreading, stratified balancing, calibration, unequal probability sampling and power allocation. This sampling design meets the numerous requirements of this study and provides a very efficient estimator.     

Temporal variation of the concentration and biochemical composition of seston within the Humboldt Current System off northern Chile (21°S)

Seasonal differences in the concentration and biochemical composition of seston have been assessed for the first time in the Humboldt Current System off northern Chile (21°S). The study comprised four seasonal surveys in the Bay of Chipana, including the summer and winter of 2006 and 2007, when El Niño 2006 and La Niña 2007 developed. Protein, lipid, carbohydrate and biogenic silica contents were measured in samples collected at four selected depths. The highest protein, lipid and carbohydrate concentrations were found at the fluorescence maximum (between 10 and 15 m depth), whereas the highest biogenic silica concentration was found 1 m above the seabed. When El Niño started developing, every variable showed low values throughout the water column; however, the lowest values were found when La Niña conditions dominated, together with low oxygen concentrations. Samples collected within the oxygen minimum zone (65 m depth) showed the lowest values for the water column and the lowest seasonal variations. After the evident decline coincident with El Niño 2006, the abundance and biochemical quality (high protein and lipid contents) of seston recovered earlier in the surface layer (upper 15 m) than at other depths.     

Chitosan/albumin/CaCO3 as mimics for membrane bioreactor fouling: genesis of structural mineralized-EPS-building blocks and cake layer compressibility

Membrane bioreactor biofouling is usually described as an extracellular matrix in which biopolymers, inorganic salts and active microbes co-exist. For that reason, biomineralization (BM) models can be useful to describe the spatial organization and environmental constraints within the referred scenario. BM arguments were utilized as background in order to (1) evaluate CaCO₃ influence on flux decline; pore blocking and cake layer properties (resistance, permeability and compressibility) in a wide range of Chitosan/Bovine serum albumin (BSA) mixtures during step-pressure runs and, (2) perform membrane autopsies in order to explore the genesis of mineralized extracellular building blocks (MEBB) during cake layer build up. Using low molecular weight chitosan (LC) and BSA, 2 L of 5 LC/BSA mixtures (0.25-1.85 ratio) were pumped to an external ultra filtration (UF) membrane (23.5 cm², hydrophobic, piezoelectric, 100 kDa as molecular weight cut-off). Eight different pressure steps (40 ± 7 to 540 ± 21 kPa) were applied. Each pressure step was held for 900 s. CaCO₃ was added to LC/BSA mixtures at 0.5, 1.5 and 3 mM in order to create MEBB during the filtration tests. Membrane autopsies were performed after the filtration tests using thermo gravimetric, scanning microscopy and specific membrane mass (mg cm⁻²) analyses. Biopolymer-CaCO₃ step-pressure filtration created compressible cake layers (with inner voids). The formation of an internal skeleton of MEBB may contribute to irreversible fouling consolidation. A hypothesis for MEBB genesis and development was set forth.