Behavior of a hammerhead ribozyme in aqueous solution at medium to high temperatures

The “RNA world” hypothesis proposes that—early in the evolution of life—RNA molecules played important roles both in information storage and in enzymatic functions. However, this hypothesis seems to be inconsistent with the concept that life may have emerged under hydrothermal conditions since RNA molecules are considered to be labile under such extreme conditions. Presently, the possibility that the last common ancestor of the present organisms was a hyperthermophilic organism which is important to support the hypothesis of the hydrothermal origin of life has been subject of strong discussions. Consequently, it is of importance to study the behavior of RNA molecules under hydrothermal conditions from the viewpoints of stability, catalytic functions, and storage of genetic information of RNA molecules and determination of the upper limit of temperature where life could have emerged. In the present work, self-cleavage of a natural hammerhead ribozyme was examined at temperatures 10–200?°C. Self-cleavage was investigated in the presence of Mg²⁺, which facilitates and accelerates this reaction. Self-cleavage of the hammerhead ribozyme was clearly observed at temperatures up to 60?°C, but at higher temperatures self-cleavage occurs together with hydrolysis and with increasing temperature hydrolysis becomes dominant. The influence of the amount of Mg²⁺ on the reaction rate was also investigated. In addition, we discovered that the reaction proceeds in the presence of high concentrations of monovalent cations (Na⁺ or K⁺), although very slowly. Furthermore, at high temperatures (above 60?°C), monovalent cations protect the ribozyme against degradation.     

Climate change,adaptation and Eco-Art in Singapore

Eco-Art has recently emerged as a potential means to place emphasis on environmental issues such as climate change, recycling and the metabolism of the city experienced both materially and conceptually within local, regional and global contexts. Such art presents the possibility of shaping civic practices in arenas beyond those of traditional planning domains. Adopting a pragmatic approach, which recognises the contextual pluralism that exists in debates regarding climate change, this paper is interested in how Eco-Art projects encourage the re-imagining of urban spaces within the context of sustainability, and flows of materials and the recycling of plastic in art specifically.     

Vaccinations for waste-handling workers. A review of the literature.

A review of the literature relating to the need for vaccination against infectious disease in the solid waste industry was conducted, focusing on hepatitis A, hepatitis B and tetanus. Databases (Medline, PreMedline, EMBASE, CINAHL, Current Contents, Cochrane Database, HTA Database, DARE, OSHROM) were searched up to and including August 2003. Articles were included in the review if they reported the prevalence of immunity to hepatitis A, hepatitis B or tetanus in solid waste workers or the incidence of clinical infection with any of these diseases. Papers about hazardous or medical waste, incineration or other infectious diseases were excluded. Forty-four papers constituted the evidence database. Only one paper studied the prevalence of antibodies to hepatitis A and hepatitis B in solid waste workers compared with sewage plant workers and office workers, and no difference was found between these groups of workers. There was some evidence to support a theoretical risk of infection with hepatitis A, B and tetanus; however, no studies could be found of the risk of these diseases in solid waste workers. No single cases of these diseases being acquired occupationally in solid waste management were identified in the literature. Workers in the solid waste industry may theoretically be at increased risk of acquiring infectious diseases occupationally. However, at present no studies could be found which have documented this risk.     

Ecological Biodiversity of Marine Nematodes in Samples from Temperate, Tropical, and Deep-Sea Regions

Little is known about the biodiversity of free-living nematodes. We have attempted to provide baseline information about the natural diversities (those not influenced by pollution) that might be expected in six biotopes. Seventeen marine nematode data sets consisting of 197 samples were standardized to allow a comparison of alpha diversity, or sample diversity, from temperate estuarine, tropical sublittoral, temperate sublittoral, bathyal, abyssal, and hadal biotopes, which were selected on criteria of depth and latitude. The diversity analysis methods we employed were rarefaction curves; three weighted diversity indices of species richness, SR, H', and ES(X); and two equitability indices, J' and V. Diversity was significantly different in the six biotopes. The weighted indices of species richness were more capable of resolving differences between the biotopes than were the equitability indices, whose large standard errors suggested that they were more influenced by local, small-scale ecological factors. This suggests that species richness is a better measure than equitability for large-scale comparisons of biotopes or regions. The ES(X), which is robust to sample size variations, was more efficient than the weighted indices of species richness, which were easily influenced by sample size. There was a nonlinear relationship between depth and diversity with the bathyal and abyssal biotopes displaying the highest diversity. The tropical sublittoral biotope was not more diverse than the temperate sublittoral biotope. The lowest diversities were found in the physically challenging temperate estuarine and hadal biotopes.     

An unusual cyanophyte,containing phycourobilin and symbiotic with ascidians and sponges

A study was made of the pigment composition and ultrastructure of a unicellular cyanophyte living in symbiosis with colonial didemnid ascidians and encrusting sponges collected from the southern end of the Great Barrier Reef, Australia, in 1981–1984. The ascidians were Trididemnum tegulum Kott and T. clinides. Kott; the sponges were Prianos aff. melanos de Laubenfels, Spirastrella aff. decumbens Ridley and an unidentified brown fleshy sponge (BFS). This cyanophyte seems to be identical with Synechocystis trididemni Lafargue et Duclaux. A phycoerythrin containing both phycourobilin and phycoerythrobilin chromophores was shown to be present; the urobilin was carried on and subunits, no subunit was found. A second phycoerythrin possessing only erythrobilin chromophores was also present. In thin-sections the cells showed no central DNA-containing nucleoid, and an unusual thylakoid arrangement with some thylakoids having greatly expanded lumens forming pseudo-vacuoles in the centre of the cell. Freeze-fracture showed 11 to 12 nm particles on both PF (protoplasmic face) and EF (exoplasmic face) faces of thylakoids. In many ways, the ultrastructure resembled that of the chlorophyll-b containing prokaryote Prochloron spp.     

A test of the producer-scrounger foraging game in captive flocks of spice finches,Loncbura punctulata

Group foraging allows the co-existence of a strategy (producer) that involves searching for food, and its alternative (scrounger) exploiting the food of the producer. The use of producer and scrounger strategies has been modelled as an alternative-option scramble which assumes strong negative frequency-dependence of the scrounger's pay-offs. We tested this assumption in a flock feeding situation by manipulating the proportion of scroungers in flocks of spice finches, Lonchura punctulata. In a first experiment we found that: (1) the food intake of scroungers, and to a lesser extent producers, was negatively affected by an increase in the proportion of scroungers; (2) the food intake of producers and scroungers was equal when the proportion of scroungers was small, suggesting that producers, who exploited 35.4% of their patches by scrounging were opportunistically adjusting their use of the strategies until the pay-offs equalized. In a second experiment we tested whether finches could vary their use of the two strategies in response to changes in foraging conditions brought about by an increase in the cost of producing. As predicted by the game, finches reduced their use of the producer strategy and increased their use of the scrounger strategy when the cost of producing increased. These results suggest that spice finches can alter their allocation to each foraging alternative by experience and that the producer-scrounger game is a realistic model for predicting group foraging decisions. Correspondence to: L.-A. Giraldeau     

Biorheological properties of intertidal organic fluff on mud flats and its modification of gill ventilation in buried sole <Emphasis Type="Italic">Solea solea</Emphasis>

Intertidal mudflats are important nursery grounds for juveniles of many fish species. However, they are being used increasingly to farm bivalve molluscs, which produce large amounts of organic “fluff”, overlying the mud. Fish such as sole, Solea solea, hide in this fluff from potential predators, but the energy consumed by respiring the fluff may be high due to its biorheological properties. We developed an ichthyoviscometer. It incorporates a freshly killed fish as a viscometer, and we developed it to measure the rheological properties of fluids and suspensions, including fluff, at scales encompassing those in gill ventilation. We have shown that the rheological behaviour of fluff is close to that of a gel with a yield stress strongly dependent on particulate organic matter concentration ([POM]). This has allowed us to model fluff flow through the gill channels in living sole as a function of fish size and [POM], showing that in a 26-g sole, fluff would halve flow at a [POM] value of 3.2 g l⁻¹, and stop it at 3.4.