Shifts in Microbial Communities, Microbial Biomass and Organic Matter Mineralization for Three Mediterranean Soils Contaminated By Metals

Microbial communities (phospholipid fatty acid pattern, bacterial growing strategies, eco-physiological index (EPI) and total bacteria counts, as a number of heterotrophic cuhurable bacteria), substrate-induced respiration (SIR), and nitrogen mineralization were studied in three Mediterranean soils at three different depth levels (A, B and C). Soils were experimentally treated with a final concentration of 1000 ppm of trace metals (Cu²⁺, Zn²⁺, Al³⁺, Fe²⁺, Pb²⁺, Ni²⁺, Mn²⁺, Cr³⁺ and Cd²⁺). Soils were stored in 571 plastic containers for one year, and watered with 1001 during this period. Leachate was recovered through a bottom tap. Samples of the three depths were studied. Soil microbial communities showed different effects to other studies presented in the literature, but carried out on non-Mediterranean soils. Dramatic differences were found between treated soils and untreated ones, but not between soils or horizons. the treated soil displayed a decrease in CFUs, SIR N-mineralization and EPI together with a dominance of r-growing strategists. the relative moles percent of several PLFAs, especially 15:0, 16: 1ω7, cy17: 0, br18:0 and 18: 1ω7 decreased because of the pollution of soils, whereas 10Me16, 18:2ω6, cy19:0, i16:0 and br17:0 showed higher values than in untreated soils.     

Application of activated sludge model no. 3 for the modeling of organic matter biodegradation at thermophilic temperatures.

The primary aim of our research was to investigate the applicability of activated sludge models (ASM) for aerobic thermophilic processes, especially autothermal thermophilic aerobic digestion (ATAD). The ASM3 model (Gujer et al., 1999) theoretically seems to be the most suitable, because storage plays an important role in a batch-feed cycle system like ATAD. The ASM3 model was extended with an activation step of the thermophilic organisms. This model was calibrated and verified by independent test results, demonstrating its ability to describe the process. The growth (microH = 26.04 day(-1)), storage (k(STO) = 20.39 day(-1)), hydrolysis (kH = 11.15 day(-1)) and decay rates (b 9H,O2) = 1.28 day(-1), b(STO,O2 = 1.10 day-1)) obtained from calibration are significantly higher at 55 degrees C than at mesophilic temperatures, justifying the faster metabolism at higher temperatures. An inert fraction of the biomass (characterized by the model parameter f(i) = 0.4) was found to be significantly greater than in the mesophilic case. This can be attributed to the lower diversity of the thermophilic species and thus to their narrower substrate spectra.     

Temporal and spatial variability in coral recruitment on two Indonesian coral reefs: consistently lower recruitment to a degraded reef

Corals are the primary reef-building organisms, therefore it is key to understand their recruitment patterns for effective reef management. Coral recruitment rates and juvenile coral abundance were recorded in the Wakatobi National Marine Park, Indonesia, on two reefs (Sampela and Hoga) with different levels of environmental degradation (12.5 vs. 44 % coral cover with high and low sedimentation rates, respectively) to examine consistencies in recruitment patterns between years and seasons. Recruitment was measured on multiple panels at two sites on each reef (6–7 m depth) and cleared areas of natural reef. Although coral recruitment was twofold higher in 2008–2009 than in 2007–2008, and seasonal differences were identified, consistent significant differences in recruitment rates were found between the two reefs even though they are separated by only ~1.5 km. Recruitment rates and juvenile abundance were lower on the more degraded reef. These patterns are likely a consequence of differential pre- and post-settlement mortality as a result of the high sedimentation rates and degraded conditions and possibly reduced larval supply.     

Twelve years of assessing the quality of preimplantation genetic testing for monogenic disorders

Objective

Genomics Quality Assessment has provided external quality assessments (EQAs) for preimplantation genetic testing (PGT) for 12 years for eight monogenic diseases to identify sub-optimal PGT strategies, testing and reporting of results, which can be shared with the genomics community to aid optimised standards of PGT services for couples.

Method

The EQAs were provided in two stages to mimic end-to-end protocols. Stage 1 involved DNA feasibility testing of a couple undergoing PGT and affected proband. Participants were required to report genotyping results and outline their embryo testing strategy. Lymphoblasts were distributed for mock embryo testing for stage 2. Submitted clinical reports and haplotyping results were assessed against peer-ratified criteria. Performance was monitored to identify poor performance.

Results

The most common testing methodology was short tandem repeat linkage analysis (59%); however, the adoption of single nucleotide polymorphism-based platforms was observed and a move from blastomere to trophectoderm testing. There was a variation in testing strategies, assigning marker informativity and understanding test limitations, some clinically unsafe. Critical errors were reported for genotyping and interpretation.

Conclusion

EQA provides an overview of the standard of preimplantation genetic testing-M clinical testing and identifies areas of improvement for accurate detection of high-risk embryos.     

Flow cytometry detection of lysosomal presence and lysosomal membrane integrity in the three-spined stickleback (Gasterosteus aculeatus L.) immune cells: applications in environmental aquatic immunotoxicology.

The neutral red retention assay has been proposed to determine the lysosomal membrane stability in immune cells. Nevertheless, this assay implies many examinations under a microscope at short time intervals and therefore the analysis of few samples. The present study proposes two more rapid, efficient, and sensitive sample analyses using flow cytometry method. Lysosomal presence and lysosomal membrane integrity (LMI) were evaluated on the three-spined stickleback, Gasterosteus aculeatus (L.), a well-described model fish species for aquatic ecotoxicology studies. After development of the two biomarkers, they were validated by ex vivo contamination with endosulfan and copper and by in situ sampling. These immunomarkers were clearly modulated by pollutants and their variations seemed to be correlated with leucocyte mortality. Thus, from a practical point of view, lysosomal presence and LMI may provide novel and efficient means of evaluating immune capacities and indicating the toxic effects of environmental pollution.