Analysis of two-way layout of count data with negative binomial variation

A number of methods has been proposed for dealing with single-factor or factorial experiments when the requirements for performing the normal theory analysis of variance procedure are not satisfied. This paper suggests the use of the likelihood ratio statistic for testing the main effects and the interaction between the factors in two-way layout of count data following negative binomial distributions with a common dispersion parameter. The likelihood ratio statistic for testing the equality of the dispersion parameters of several groups of count data is also derived. The methods is illustrated by an example concerning the study of spatial and temporal variation of bacterial counts.     

Robust graphical methods for diagnosing trend in irregularly spaced water quality time series

Graphical methods can play an important role in the reliable assessment of trends in typically ill behaved river quality data series both as diagnostic tools and as visual corroborative evidence when assumptions required for formal statistical tests are not met. Robust, graphically-oriented trend diagnosis procedures are presented for data series characterized by nonnormal populations, uneven time spacing, nonmonotonic trend and other factors which can create serious problems for standard parametric time series methods. Cleveland's robust locally weighted regression (RLWR) developed for investigating nonlinearity in x-y scatterplots is adapted as a robust/resistant smoothing filter for the analysis of irregular time series comprising quantitative observations. Low powered RLWR trend lines reveal temporally local phenomena, e.g. abrupt jumps (often associated with point source impacts) and periodicities, while higher powered RLWR yields smooth lines characterizing medium and longer term trends. Simple variants of Tukey smoothing concepts are developed for series with censored observations. Applications to Ontario river quality series reveal that graphical evidence is frequently sufficient to obviate the need for formal trend testing. The methods are generally applicable to most time series.     

Dose-time-response functions for toxic chemicals

In many situations, the effect of a toxic chemical on a biological system depends on both the intensity and the duration of exposure. The dependence on the time dimension can be the expression of a range of processes including the physical accumulation of toxic chemicals or their metabolites and the functional accumulation of damage. Measures and functions that have been used to describe this dependence are reviewed.Some of these functions are compared through a case study of the neurotoxicity of methylmercury. Use is made of data that indicates a dependency between the blood concentration at which monkeys were exposed and the length of time before damage was detected. Several exposure functions are fitted to these data and their appropriateness is compared. Using the most appropriate function, an exposure-response relationship is developed using probit analysis. An alternative data analysis procedure is also investigated. The apparent threshold after a 100 day exposure is estimated to be greater by a factor of 3–5 compared to the threshold for chronic exposure. Applying this factor to man, the blood concentration threshold for chronic exposure is estimated to be 40–170 ppb, a finding consistent with recent reports of neurological damage in humans exposed below the generally accepted threshold.     

The eolian sand problems arising from desertification

Eolian (wind blown) sand constitutes a very serious problem to development in sandy desert lands and causes equally serious problems in lands that are undergoing desertification. In this paper, eolian sand movement due to bulk movement such as sand dune and ripple movement, sand drift by saltation, and sand storms by strong winds are discussed. Associated problems such as eolian sand encroachment on highways, farms, communities and industrial complexes are also discussed and workable solutions are offered. Solutions include chemical stabilization of the surface grains, fences to trap the blown sand and vegetation to prevent soil deflation. Vegetation is emphasized and recommended as the ultimate viable solution to combat desertification and eolian sand problems.     

Indoor concentrations of carbon monoxide in selected urban microenvironments

CO concentrations were measured in five kindergartens, one children's hospital and two homes for aged, practically without indoor sources, all situated in the city centre, for ten random days in winter and ten in summer. The indoor CO concentrations were the result of the distance from and the traffic density in the nearest street, of general pollution level, seasonal differences, day-to-day variations and daily cycle of air pollution, the vicinity of traffic having a dominant influence. Therefore location of institutions for sensitive population groups in old city centres within a block of houses seems to be a suitable solution as far as exposure to CO is concerned.Revised version of a paper presented as poster at the VIth World Congress on Air Quality, Paris 1983.     

Determination of biomass burning emission factors: Methods and results

Biomass burning, in a broad sense, encompasses different burning practices, including open and confined burnings, and different types of vegetation. Emission factors of gaseous or particulate trace compounds are directly dependent both on the fuel type and the combustion process. Emission factors are generally calculated by stoichiometric considerations using the carbon mass balance method, applied either to combustion chamber experiments or to field experiments based on ground-level measurements or aircraft sampling in smoke plumes. There have been a number of experimental studies in the last 10 years to investigate wildfires in tropical, temperate, or boreal regions. This article presents an overview of measurement methods and experimental data on emission factors of reactive or radiatively active trace compounds, including trace gases and particles. It focuses on fires in tropical regions, that is, forest and savanna fires, agricultural burns, charcoal production, use of fuelwood, and charcoal combustion.     

Characterization of microbial communities from coastal waters using microarrays

Molecular methods, including DNA probes, were used to identify and enumerate pathogenic Vibrio species in the Chesapeake Bay; our data indicated that Vibrio vulnificus exhibits seasonal fluctuations in number. Our work included a characterization of total microbial communities from the Bay; development of microarrays that identify and quantify the diversity of those communities; and observation of temporal changes in those communities. To identify members of the microbial community, we amplified the 16S rDNA gene from community DNA isolated from a biofilm sample collected from the Chesapeake Bay in February, 2000. The resultant 75 sequences were 95% or more similar to 7 species including two recently described Shewanella species, baltica and frigidimarina, that have not been previously isolated from the Chesapeake. When the genera of bacteria from biofilm after culturing are compared to those detected by subcloning amplified 16S fragments from community DNA, the cultured sample exhibited a strong bias. In oysters collected in February, the most common bacteria were previously unknown. Based on our 16S findings, we are developing microarrays to detect these and other microbial species in these estuarine communities. The microarrays will detect each species using four distinct loci, with the multiple loci serving as an internal control. The accuracy of the microarray will be measured using sentinel species such as Aeromonas species, Escherichia coli, and Vibrio vulnificus. Using microarrays, it should be possible to determine the annual fluctuations of bacterial species (culturable and non-culturable, pathogenic and non-pathogenic). The data may be applied to understanding patterns of environmental change; assessing the health of the Bay; and evaluating the risk of human illness associated with exposure to and ingestion of water and shellfish.     

Life-history parameters and vertical distribution of Maurolicus muelleri in Masfjorden in summer

Population characteristics, individual life-history variables, feeding and vertical distribution of the mesopelagic fish Müller's pearlside Maurolicus muelleri collected in 1990 in Masfjorden, western Norway, are reported as well as environmental variables from the fjord. Minimum size at maturity was far smaller than reported from previous investigations in the same region. Fecundity was size-dependent and total egg numbers were higher than reported from other investigations of M. muelleri world wide, while the number of maturing eggs was far lower than observed in the same region earlier. Food concentration in the fjord was an order of magnitude lower than previous early summer observations, and several factors indicated that feeding opportunities may have been low for a long period. Daily feeding rate (g prey g^-1 fish) decreased with increasing fish size. These observations fit well with a model of maximizing fitness by means of a flexible size at maturity. Minimum age at maturity seems to be achieved at the expense of fecundity. M. muelleri was concentrated in a 20 to 30 m deep sound scattering layer (SSL). The SSL stayed close to the surface during the night and at 100 to 180 m during the daytime. The vertical position of the SSL varied instantaneously with changes in surface light intensity, remaining at 10^-3 to 10^-4 mol m^-1 s^-1 at the top of the SSL. Stomach fullness was highest during the night; feeding intensity seems to have been peaked at dusk. Cladocerans were the main prey ranked by number, copepods by biomass. Intake of large copepods increased with fish size.     

Fractionation of Cu, Pb and Zn in certified reference soils SRM 2710 and SRM 2711 using the optimized BCR sequential extraction procedure

Sequential extraction of metals from solid media is a common analytical tool used in environmental and exploration geochemistry. A number of procedures exist, but without harmonization and standardization, meaningful comparisons are tenuous without baseline data. A newly developed, standardized sequential extraction procedure (optimized BCR) was applied to two contaminated certified reference soils from Montana, US (SRM 2710 and SRM 2711) for Cu, Pb and Zn. Four operationally defined fractions were isolated, acid extractable, reducible, oxidizable, and residual (by aqua regia). Fraction-specific concentrations, percentages and recoveries for Cu, Pb and Zn were used to explore differences between the optimized BCR procedure and three other sequential extraction schemes with published data for SRM 2710 and 2711 (i.e. Tessier scheme, Geological Survey of Canada scheme and the original BCR scheme). Results indicate significant differences between the four schemes, even for schemes that are closely associated (i.e. the original and optimized BCR schemes). Order-of-magnitude fraction-specific concentration differences were observed, especially for Pb in the reducible fraction. Differences between schemes are worrisome because trends varied between metals, between fractions and between reference soils. These data reinforce the need for increased adoption of standardized sequential extraction procedures and further examination of different solid media.