Hepatitis A Virus: State of the Art

Hepatitis A is the most common among all hepatitis worldwide in spite of an efficient vaccine and improved hygiene. Shellfish-borne outbreaks are still of major concern causing hundreds of cases and huge economical losses in the present context of global food trade. Hepatitis A virus (HAV) is a unique picornavirus with many differences in its molecular biology including both its incapacity to induce the inhibition of the cellular protein synthesis and a highly biased and deoptimized codon usage with respect the cell. The final goal of this intriguing strategy seems to be the need for a fine-tuning control of the translation kinetics, particularly at the capsid coding region, and the underlying mechanism is the use of a right combination of common and rare codons to allow a regulated ribosome traffic rate thus ensuring the proper protein folding. Capsid folding is critical to warrant a high environmental stability for a virus transmitted through the fecal–oral route with long extracorporeal periods.     

Movements and environmental preferences of the shortfin mako, <Emphasis Type="Italic">Isurus oxyrinchus</Emphasis>, in the southeastern Pacific Ocean

Nine individuals of shortfin mako, Isurus oxyrinchus, were tracked in the southeastern Pacific Ocean, off northern Chile, by means of pop-up satellite archival tags. No common pattern was observed in their trajectories, apart from a movement onshore of all the fish tracked during June–August. The average estimated rate of movement was of c. 27 km day⁻¹. Data were collected and processed for a total of 341 days, including 33 days for one recaptured fish specimen, allowing high-resolution archived data to be downloaded. The fish spent most of their time in the mixed layer but undertook dives down to 888 m. Ambient temperatures ranged between 4.6 and 24.1°C, and the sea surface temperatures recorded ranged from 13.4 to 24.1°C during the study period. No clear diel pattern in depth behavior was observed, but mean vertical distribution was deeper during the daytime. Moreover, a foraging pattern, consisting of rapid descents below the thermocline followed by slower ascents, was generally observed during daylight hours. Dissolved oxygen concentration and water temperature seem to be the main factors affecting the vertical range of the species in the area. This is the first study on electronic tagging of the shortfin mako in the southeastern Pacific Ocean and covers the longest total tracking period reported so far for this species.     

Bottom-up control of consumers leads to top-down indirect facilitation of invasive annual herbs in semiarid Chile

The abundance of exotic plants is thought to be limited by competition with resident species (including plants and generalist herbivores). In contrast, observations in semiarid Chile suggest that a native generalist rodent, the degu (Octodon degus), may be facilitating the expansion of exotic annual plants. We tested this hypothesis with a 20-year data set from a World Biosphere Reserve in mediterranean Chile. In this semiarid environment, rainfall varies annually and dramatically influences cover by both native and exotic annual plants; degu population density affects the composition and cover of exotic and native annual plants. In low-rainfall years, cover of both native and exotic herbs is extremely low. Higher levels of precipitation result in proportional increases in cover of all annual plants (exotic and native species), leading in turn to increases in degu population densities, at which point they impact native herbs in proportion to their greater cover, indirectly favoring the expansion of exotic plants. We propose that bottom-up control of consumers at our site results in top-down indirect facilitation of invasive annual herbs, and that this pattern may be general to other semiarid ecosystems.     

Landscape changes of desertification in arid areas: the case of south-west Algeria

This study aims to monitor the arid Algerian High Plateaus, a key region for pastoral activities which has suffered harsh and widespread degradation from the eighties. This area is not sufficiently known by the international scientific community. For this purpose, we considered phytoecological inventories and thematic maps that have been carried out during 30 years. Available data for the study are vegetation maps derived from aerial photographs (1975-1978) and from satellite imagery (2006). The parameters considered include vegetation, flora, and soil surface properties. The study area is part of the ROSELT/OSS (ROSELT: Réseau d'Observatoires de Surveillance Ecologique à Long Terme (Long Term Ecological Monitoring Observatories Network); OSS: Observatory of the Sahara and the Sahel) network observatory (OSS 2008). To assess land degradation, we used landscape ecology parameters. These include the number and surface area of vegetation units, synthesized by the large patch index and the Shannon landscape diversity index. All parameters reflect an increase in landscape heterogeneity. The largest decline is observed for Stipa tenacissima vegetation units constituting 2/3 of the landscape in 1978 and occupied just 1/10 in 2006. Vegetation units linked to degradation, such those dominated by Salsola vermiculata, inexistent in 1978, now dominate the steppe. Another result of the ongoing landscape degradation on the plateaus between 1975 and 2006 is the decrease of vegetation cover. In 1978, 1/3 of rangelands only had low vegetation covers, inferior to 15%. Presently 9/10 present the same class cover. This can be explained by severe spells of drought combined by an exponential rise of livestock during the last 30 years. This has in turn greatly undermined the fodder potential of the steppe. Results suggest that the "greening-up" described by several authors in the Sahel over the last 40 years is not observed in the Algerian, nor in the North African steppes. On the contrary, the desertification is still ongoing and the threshold of irreversibility seems to be imminent.     

Multi-residue analysis of fifty pesticides in river waters and in wastewaters

Environmental Science and Pollution Research - Three sampling campaigns were performed in the Lis River (Leiria, Portugal) in February of 2018, November of 2018, and May of 2019. River water and...     

“Nutrient Inputs to the Laurentian Great Lakes by Source and Watershed Estimated Using SPARROW Watershed Models” by Dale M. Robertson and David A. Saad2

Richards, R. Peter, Ibrahim Alameddine, J. David Allan, David B. Baker, Nathan S. Bosch, Remegio Confesor, Joseph V. DePinto, David M. Dolan, Jeffrey M. Reutter, and Donald Scavia, 2012. Discussion –“Nutrient Inputs to the Laurentian Great Lakes by Source and Watershed Estimated Using SPARROW Watershed Models” by Dale M. Robertson and David A. Saad. Journal of the American Water Resources Association (JAWRA) 1‐10. DOI: 10.1111/jawr.12006 Abstract: Results from the Upper Midwest Major River Basin (MRB3) SPARROW model and underlying Fluxmaster load estimates were compared with detailed data available in the Lake Erie and Ohio River watersheds. Fluxmaster and SPARROW estimates of tributary loads tend to be biased low for total phosphorus and high for total nitrogen. These and other limitations of the application led to an overestimation of the relative contribution of point sources vs. nonpoint sources of phosphorus to eutrophication conditions in Lake Erie, when compared with direct estimates for data‐rich Ohio tributaries. These limitations include the use of a decade‐old reference point (2002), lack of modeling of dissolved phosphorus, lack of inclusion of inputs from the Canadian Lake Erie watersheds and from Lake Huron, and the choice to summarize results for the entire United States Lake Erie watershed, as opposed to the key Western and Central Basin watersheds that drive Lake Erie’s eutrophication processes. Although the MRB3 SPARROW model helps to meet a critical need by modeling unmonitored watersheds and ranking rivers by their estimated relative contributions, we recommend caution in use of the MRB3 SPARRROW model for Lake Erie management, and argue that the management of agricultural nonpoint sources should continue to be the primary focus for the Western and Central Basins of Lake Erie.