Modeling carcass removal time for avian mortality assessment in wind farms using survival analysis

In monitoring studies at wind farms, the estimation of bird and bat mortality caused by collision must take into account carcass removal by scavengers or decomposition. In this paper we propose the use of survival analysis techniques to model the time of carcass removal. The proposed method is applied to data collected in ten Portuguese wind farms. We present and compare results obtained from semiparametric and parametric models assuming four main competing lifetime distributions (exponential, Weibull, log-logistic and log-normal). Both homogeneous parametric models and accelerated failure time models were used. The fitted models enabled the estimation of the carcass persistence rates and the calculation of a scavenging correction factor for avian mortality estimation. Additionally, we discuss the impact that the distributional assumption can have on parameter estimation. The proposed methodology integrates the survival probability estimation problem with the analysis of covariate effects. Estimation is based on the most suitable model while simultaneously accounting for censored observations, diminishing scavenging rate estimation bias. Additionally, the method establishes a standardized statistical procedure for the analysis of carcass removal time in subsequent studies.     

Detailed characterization of solute transport in a heterogeneous field soil

There is a necessity for improved physical understanding of solute transport processes in heterogeneous soil systems. In situ nondestructive techniques like time domain reflectometry (TDR) and fiber optic miniprobes (FOMPs) permit the collection of unique measurements of solute transport processes in soils for the purposes of model development and validation. This study examined the application of TDR and FOMPs to measure solute transport at various points laterally and at two depths in a heterogeneous clay-loam soil. A miscible displacement experiment was performed at a constant irrigation flux to examine the applicability of these probes to field soils. In their first application to a field soil, the FOMPs were successfully calibrated and performed well in measuring solute breakthrough curves. Two flow regimes were identified in the soil profile, the first where lateral spreading of the solute occurred in the surface horizon, followed by convergence into preferential flow pathways in the second transport zone. The measured transport response was heterogeneous with at least two identifiable vertical flow phases. It was demonstrated using transfer function modeling and data from a corresponding laboratory study that the FOMPs were measuring the slower phase, while the TDR probes captured a composite of the fast and slow phases. The combination of these two techniques may be a means to separate solute transport phases in heterogeneous media and relate laboratory column results to field studies.     

Mercury in sediments and vegetation in a moderately contaminated salt marsh (Tagus Estuary, Portugal)

Depth variations of total mercury (Hg) and methylmercury (MeHg) concentrations were studied in cores from non-colonized sediments, sediments colonized by Halimione portulacoides, Sarcocornia fruticosa and Spartina maritima and belowground biomass, in a moderately contaminated salt marsh (Tagus Estuary, Portugal). Concentrations in belowground biomass exceeded up to 3 (Hg) and 15 (MeHg) times the levels in sediments, and up to 198 (Hg) and 308 (MeHg) times those found in aboveground parts. Methylmercury in colonized sediments reached 3% of the total Hg, 50 times above the maximum values found in non-colonized sediments. The absence of correlations between total Hg concentrations in sediments and the corresponding MeHg levels suggested that methylation was only dependent on the environmental and microbiological factors. The analysis of belowground biomass at high-depth resolution (2 cm) provided evidence that Hg and MeHg were actively absorbed from sediments, with higher enrichment factors at layers where higher microbial activity was probably occurring. The results obtained in this study indicated that the biotransformation of Hg to the toxic MeHg could increase the toxicity of plant-colonized sediments.     

Water quality supply in a Portuguese teaching hospital: monitoring and studies on detection of critical points

Surveillance of drinking water quality is extremely important to human health, assuming greater relevance in hospital environments, especially to those individuals who are immunocompromised. This study is aimed to determine the effect of increasing free chlorine (Cl) concentration in a hospital water network in regard to water quality monitoring and microbial growth control, between 2010 and 2013 in Porto. The average of free Cl concentration in the period under analysis showed some heterogeneity per floor, varying between 0.84 and 1.25 mg/L. In addition, there was a rise in proportion of samples that exceeded WHO guidelines (free Cl ≥ 0.5 mg/L), particularly in the last two years of the same period. With respect to microbial analysis, 22.4% of the samples were positive for Legionella spp., 6.4% for Pseudomonas aeruginosa, 15% and 30.4% for aerobic plate counts at 36 and 22 ºC, respectively. The proportion of positive samples decreased throughout the period under analysis, in particular for Legionella spp. (41.7% in 2010 vs. non-detectable in 2013) and P. aeruginosa (10.8% in 2010 vs. 3.3% in 2013). These results are in accordance with the gradual rise in free Cl concentration (0.78 ± 0.94 mg/L in 2010 vs. 1.16 ± 0.51 mg/L in 2013). In conclusion, a suitable plan for drinking water quality was instituted which resulted in reducing microbiological growth in the waterwork network, improving public health protection. However, the detection of critical points associated with lower levels of free Cl were found on certain floors/points-of-use, requiring the need to improve the monitoring water treatment system and/or implementation of additional technologies.     

Application of water quality indices and analysis of the surface water quality monitoring network in semiarid North-Central Chile

Surface water quality has increasing importance worldwide and is particularly relevant in the semiarid North-Central Chile, where agriculture and mining activities are imposing heavy pressure on limited water resources. The current study presents the application of a water quality index in four watersheds of the 29°-33°S realm for the period 1999-2008, based on the Canadian Council of Ministers for the Environment approach and the Chilean regulation for irrigation water quality. In addition, two modifications to the index are tested and a comprehensive characterization of the existing monitoring network is performed through cluster analysis. The basins studied show fairly good water quality in the overall, specially the Limarí basin. On the other hand, the lower index values were obtained for the headwaters of Elqui, associated with the El Indio mining district. The first modification of the indicator (i.e., to consider parameters differentially according to their effect on human health or the environment) did not produce major differences with respect to the original index, given the generally good water quality. The second modification (i.e., to consider as threshold values the more restrictive figures derived from a set of regulations) yielded important differences in the indicator values. Finally, an adequate characterization of the monitoring network was obtained. The results presented spatial coherence and the information can be used as a basis for the optimization of the monitoring network if required.     

Are pharmaceuticals more harmful than other pollutants to aquatic invertebrate species: a hypothesis tested using multi-biomarker and multi-species responses in field collected and transplanted organisms

The aim of this study was to test if pharmaceuticals could explain observed responses of field collected and transplanted invertebrate species (Hydropsyche exocellata, Echinogammarus longisetosus, and Daphnia magna). The study was performed in the middle and lower course of Llobregat river basin, which is affected by pharmaceuticals and other pollutants coming from sewage treated effluents. Up to 10 different endpoints including enzyme activities related with detoxication mechanisms (i.e. glutathione S transferase, catalase, esterases), the oxidative stress damage marker (lipid peroxidation), and individual responses (mortality, post-exposure feeding rates) were assessed. Biological responses were complemented with a detailed chemical analysis of metals, detergents, pesticides, pharmaceuticals and other general water quality variables to allow identifying causal abiotic factors. Estimated hazard indexes of measured pollutants indicated that pesticides and metals accounted for most of the predicted toxicity (>95%) in the most contaminated site and that the predicted toxicity of pharmaceuticals was marginal (<5%). The three species showed a clear impact across the studied gradient indicated by higher levels of feeding inhibition and of mortality towards lower reaches. Specific responses such as inhibition of cholinesterase activities were closely related to high and presumable toxic levels of diazinon, whereas unspecific responses such as enhanced levels of antioxidant defensive mechanism and of lipid peroxidation levels were associated with most pollutant classes as well as with high and presumable toxic levels of salt and ammonia. These results indicate that pesticides, salinity, ammonia probably had greater effects on the studied species than pharmaceuticals.