Bridging gaps in demographic analysis with phylogenetic imputation

Phylogenetically informed imputation methods have rarely been applied to estimate missing values in demographic data but may be a powerful tool for reconstructing vital rates of survival, maturation, and fecundity for species of conservation concern. Imputed vital rates could be used to parameterize demographic models to explore how populations respond when vital rates are perturbed. We used standardized vital rate estimates for 50 bird species to assess the use of phylogenetic imputation to fill gaps in demographic data. We calculated imputation accuracy for vital rates of focal species excluded from the data set either singly or in combination and with and without phylogeny, body mass, and life-history trait data. We used imputed vital rates to calculate demographic metrics, including generation time, to validate the use of imputation in demographic analyses. Covariance among vital rates and other trait data provided a strong basis to guide imputation of missing vital rates in birds, even in the absence of phylogenetic information. Mean NRMSE for null and phylogenetic models differed by <0.01 except when no vital rates were available or for vital rates with high phylogenetic signal (Pagel's λ > 0.8). In these cases, including body mass and life-history trait data compensated for lack of phylogenetic information: mean normalized root mean square error (NRMSE) for null and phylogenetic models differed by <0.01 for adult survival and <0.04 for maturation rate. Estimates of demographic metrics were sensitive to the accuracy of imputed vital rates. For example, mean error in generation time doubled in response to inaccurate estimates of maturation time. Accurate demographic data and metrics, such as generation time, are needed to inform conservation planning processes, for example through International Union for Conservation of Nature Red List assessments and population viability analysis. Imputed vital rates could be useful in this context but, as for any estimated model parameters, awareness of the sensitivities of demographic model outputs to the imputed vital rates is essential.     

Flooding: what is the impact on pregnancy and child health?

Floods are the most common type of natural disaster in both developed and developing countries and have led to extensive morbidity and mortality throughout the world. Worldwide, over the past 30 years, flooding has claimed the lives of more than 200,000 people and affected more than 2.8 billion others. The impact of flooding on health varies among populations and depends primarily on vulnerability and the kind of event experienced. It severely disrupts livelihoods and has a significant impact on the health of pregnant women and children. In addition, it may exacerbate a range of negative psychological and physiological child and reproductive health outcomes. Awareness‐raising, education, and the issuing of warnings appear to be key initiatives to mitigate or prevent flood morbidity and mortality, especially among people living in low‐ and middle‐income countries. Agencies responding to emergencies also need to be more cognisant of the dangers, specifically those engaged in healthcare, nutrition, and water safety programmes.     

Contrasting effects of habitat loss and fragmentation on coral-associated reef fishes

Disturbance can result in the fragmentation and/or loss of suitable habitat, both of which can have important consequences for survival, species interactions, and resulting patterns of local diversity. However, effects of habitat loss and fragmentation are typically confounded during disturbance events, and previous attempts to determine their relative significance have proved ineffective. Here we experimentally manipulated live coral habitats to examine the potential independent and interactive effects of habitat loss and fragmentation on survival, abundance, and species richness of recruitment-stage, coral-associated reef fishes. Loss of 75% of live coral from experimental reefs resulted in low survival of a coral-associated damselfish and low abundance and richness of other recruits 16 weeks after habitat manipulations. In contrast, fragmentation had positive effects on damselfish survival and resulted in greater abundance and species richness of other recruits. We hypothesize that spacing of habitat through fragmentation weakens competition within and among species. Comparison of effect sizes over the course of the study period revealed that, in the first six weeks following habitat manipulations, the positive effects of fragmentation were at least four times stronger than the effects of habitat loss. This initial positive effect of fragmentation attenuated considerably after 16 weeks, whereas the negative effects of habitat loss increased in strength over time. There was little indication that the amount of habitat influenced the magnitude of the habitat fragmentation effect. Numerous studies have reported dramatic declines in coral reef fish abundance and diversity in response to disturbances that cause the loss and fragmentation of coral habitats. Our results suggest that these declines occur as a result of habitat loss, not habitat fragmentation. Positive fragmentation effects may actually buffer against the negative effects of habitat loss and contribute to the resistance of reef fish populations to declines in coral cover.     

Smoke pollution must be part of the savanna fire management equation: A case study from Darwin,Australia

Savanna fire management is a topic of global debate, with early dry season burning promoted as a large-scale emissions reduction opportunity. To date, discussions have centred on carbon abatement efficacy, biodiversity and cultural benefits and/or risks. Here we use a case study of Darwin, Australia to highlight smoke pollution as another critical consideration. Smoke pollution from savanna fires is a major public health issue, yet absent so far from discussions of program design. Here, we assess the likely impacts of increased early dry season burning on smoke pollution in Darwin between 2004 and 2019, spanning the introduction and expansion of carbon abatement programs. We found increased smoke pollution in the early dry season but little change in the late dry season, contributing to a net annual increase in air quality standard exceedances. Geospatial analysis suggests this relates to increased burning in the path of early dry season trade winds. This study highlights the complex health trade-offs involved with any large-scale prescribed burning, including for carbon abatement.Supplementary InformationThe online version contains supplementary material available at 10.1007/s13280-022-01745-9.     

Biodegradation of Low Molecular Weight Organic Acids in a Limed Forest Soil

The effect of liming (3.45 and 8.75 t ha^-1 dolomite; 16 yr after application) on the biodegradation of three low molecular weight organic acids (citrate, oxalate and propionate) in forest soils was investigated. The concentration of organic acids in the soil solution followed the series propionate > citrate > oxalate with liming having no significant impact on soil solution concentrations (mean organic acid concentration = 8.7 ± 2.3 M). Organic acid mineralization by the soil microbial community was rapid in surface organic horizons (mean half-life for citrate = 2–6 h), with biodegradation rate gradually declining with soil depth. Concentration-dependent biodegradation studies (0 to 350 M) showed that the mineralization kinetics generally conformed well to a single Michaelis–Menten equation with V_max values following the series oxalate > citrate > propionate (mean = 9.8 ± 1.0 nmol g^-1 h^-1) and K_M values following the series oxalate = citrate > propionate (mean 168 ± 25 M). The V_max values declined with soil depth, which was consistent with a general reduction in microbial activity down the soil profile. Liming induced a significant increase in V_max for citrate with no change for propionate and reduction in V_max for oxalate. The latter was probably due to adsorption and precipitation of Ca-oxalate making it unavailable for microbial uptake. The higher adsorption/precipitation capacity for oxalate in the limed soils was confirmed by adsorption isotherms. Generally, liming increased soil microbial activity by approximately 10 to 35% with calculations based on soil solution concentrations indicating that organic acid mineralization constituted approximately 3 to 15% of the total soil respiration.     

Kinetic adsorption of application of carbon nanotubes for Pb（II） removal from aqueous solution

The capability of carbon nanotubes (CNTs) to adsorb lead (Pb) in aqueous solution was investigated. Batch mode adsorption experiment was conducted to determine the effects of pH, agitation speed, CNTs dosage and contact time. The removal of Pb(II) was reach to maximum value 85% or 83% at pH 5 or 40 mg/L of CNTs, respectively. Higher correlation coefficients from Langmuir isotherm model indicates the strong adsorptions of Pb(II) on the surface of CNTs (adsorption capacity Xm = 102.04 mg/g). From this study, the results indicates that the highest percentage removal of Pb (96.03%) can be achieved at pH 5, 40 mg/L of CNTs, contact time 80 min, and agitation speed 50 r/min.     

南四湖沉积物中二噁英类化合物的分布

用1 3C同位素内标法 ,高分辨率气相色谱 高分辨率质谱对南四湖表层沉积物中 1 7种含 2 3 7 8 氯代二苯并二英 /呋喃 (PCDD/Fs)及 1 2种共平面多氯联苯 (Co PCBs)的含量、同系物异构体的分布特征、沉积通量、毒性当量及来源进行了初步分析 ,并与山东近海 (日照、烟台、青岛 )的测定结果进行比较 .总Co PCBs含量分别为 5 4 4pg·g- 1 dw (南阳湖 )和 41 4pg·g- 1 dw (微山湖 ) .总PCDD/Fs含量分别为 1 0 6 7pg·g- 1 dw (南阳湖 )和1 47 0pg·g- 1 dw (微山湖 ) .两湖含 2 3 7 8 PCDD/Fs异构体对总毒性当量浓度的贡献基本相同 ,即以四—五氯代异构体为主 .PCDD/Fs含量次序为青岛 >日照 >南四湖 >烟台 .南四湖、日照、烟台近海沉积物中的PCDD/Fs对总TEQ (PCDD/F TEQ PCB TEQ)的贡献为68 8%— 93 0 % .南四湖与山东近海沉积物中PCDDs/PCDFs比值和OCDD %∑百分比表明 ,山东省PCDD/Fs的来源较为一致 ,相对恒定 .除河口处外 ,大气沉降应是南四湖及山东近海PCDD/Fs的主要来源 .     

Bioremediation of soil contaminated with polynuclear aromatic hydrocarbons (PAHs): a review

Polynuclear aromatic hydrocarbons (PAHs) constitute a group of priority pollutants which are present at high concentrations in the soils of many industrially contaminated sites. Criteria established for the removal or treatment or both of soils contaminated with PAHs vary widely within and between nations. The bioremediation of contaminated soils with in-situ, on-site, and bioreactor techniques is reviewed, together with the factors affecting PAH degradation. Current in-situ remediation techniques are considered ineffective for the removal of most PAHs from contaminated soil. On-site 'landforming' methods have been used successfully (and within a reasonable period of time) to degrade only those PAHs with three or fewer aromatic rings. Bioreactors have proved most effective for soil remediation, since conditions for enhanced degradation can be achieved most readily. However, bioreactors are still at the development stage, and further research is required to optimise their efficiency and economy for routine use. Degradation of the more recalcitrant high-molecular-weight PAHs is contaminated soil has not been particularly successful to date. Further research needs are identified to help develop bioremediation into a most cost-effective technology. The importance of full site assessments and treatability studies for successful application in the field is emphasised.     

Remediation of metal polluted mine soil with compost: co-composting versus incorporation

Trace element contamination of post-industrial sites represents a major environmental problem and sustainable management options for remediating them are required. This study compared two strategies for immobilizing trace elements (Cu, Pb, Zn, and As) in mine spoil: (1) co-composting contaminated soil with organic wastes and (2) conventional incorporation of mature compost into contaminated soil. Sequential chemical extraction of the soil was performed to determine temporal changes in trace element fractionation and bioavailability during composting and plant growth. We show that mine spoil can be co-composted successfully and this action causes significant shifts in metal availability. However, co-composting did not lead to significant differences in metal partitioning in soil or in plant metal uptake compared with simply mixing mine spoil with mature compost. Both treatments promoted plant growth and reduced metal accumulation in plants. We conclude that co-composting provides little additional benefit for remediating trace-element-polluted soil compared with incorporation of compost.     

The national GIS demonstrator of common lands for England and Wales

This paper describes the construction of a Geographical Information System (GIS) for common land tracts in England and Wales. In particular we highlight the problems inherent in combining data sets which have not been designed with GIS approaches in mind. The paper documents, through this case study, a number of key principles for researchers faced with developing databases of this nature and the limitations of the resulting database in the light of such concerns. In doing so, we draw attention to the types of techniques that can be developed to ensure users do not use the data in unwarranted situations and so guard against potential misuse. Such statements, it is concluded, are essential components in studies where data from several different sources are combined in a GIS environment to address rural planning issues.