Photosynthetic sulfur bacteria from Zimapan Reservoir (Mexico): Seasonal variations and toxic effects of zinc in a microcosm system

Photosynthetic sulfur bacteria oxidize the sulfide produced by dissimilatory sulfate-reducing bacteria, thus preventing the occurrence of pollution by these compounds in the oxygenic zone of aquatic systems. Zinc is one of the most abundant heavy metals. Its toxic effects have been documented in various organisms that can photosynthesize, but a lack of information prevails in this respect, about photosynthetic sulfur bacteria. The aim of the present study was to evaluate the toxic effects of zinc on green sulfur bacteria (Chlorobiaceae) and purple sulfur bacteria (Chromatiaceae) in a microcosm as well to explore the possible relationships between the bacterial population growths with the physicochemical properties of the metalimnion of Zimapan Reservoir (Mexico) during a 1-year period. Hydrosoluble organic carbon (HOC) and light availability in the metalimnion were the limiting factors for growth in these bacteria. Higher HOC levels occurred in Spring, at the end of the wet season and in Winter. Current zinc levels in the reservoir seem to elicit toxic effects. At lethal zinc concentrations, the best concentration-response relationship was shown. The biomarker for purple sulfur bacteria was the bacteriochlorophyll content, while total reducing sugar was the best biomarker for green sulfur bacteria. At sublethal concentrations, zinc alters adenosine triphosphate levels, total reducing sugar, total protein content, and bacteriochlorophyll content. The observed responses indicate that green sulfur bacteria are more sensitive than purple sulfur bacteria and are suitable target organisms for use in establishing the accepted threshold concentration of zinc (NOEC 0.056–0.097 mg L^?1 of Zn) in anoxic deep water.     

Automated indirect fluoride determination by ICP-OES using discontinuous-flow analysis

An automated method for the indirect determination of fluoride by inductively coupled plasma atomic emission spectrometry using discontinuous-flow analysis has been developed. A modified flow injection analysis system was used for sample preparation. The method is based on the determination of excess cerium(III) ion after precipitation of CeF₃. Separation of the precipitate is performed online on a syringe membrane filter that is cleaned each analysis cycle by 1 M nitric acid, ensuring a long life-time for the filter. As a result of the short reaction time, a detection limit of 9.5 mg L^?1 was obtained. The precision (RSD) of the proposed method is 1.02% at fluoride concentration of 28 mg L^?1. The applicability of the technique for groundwater monitoring of fluoride-contaminated area is demonstrated.     

Effect on benthic communities of a major input of organic matter and other pollutants (coast off Barcelona,Western Mediterranean)

Benthic communities on soft bottoms off Barcelona, at and around two main pollution sources, the mouth of the Besòs River and the outlet of the submarine pipeline draining wastewater and organic sludges from the wastewater treatment plant of Sant Adrià del Besòs, have been studied. Samples were obtained with a Van Veen grab from 36 stations covering a 100 km² grid, between 10 and 70 m in depth. The effect of both pollution sources is clearly seen both at the species (the following macrofauna groups have been studied: Polychaeta, Mollusca, Echinodermata and Crustacea Decapoda) and community levels. The distribution of species and individuals numbers, species diversity and a pollution index, and of some selected (indicator) polychaeta species, all clearly define the degree of environmental degradation and the extent of the areas under the influence of the organic pollution.     

How wave exposure, group size and habitat complexity influence foraging and population densities in fishes of the genus Halichoeres (Perciformes: Labridae) on tropical rocky shores

Wave exposure and habitat complexity have been used to explain variations in the distribution patterns and behavior of many reef fishes. This study analyzed the influence of both factors on density and foraging activity, and the influence of group size on foraging in three species of the genus Halichoeres (Labridae) on tropical rocky shores. It was shown that initial phases (IP) and terminal phases (TP) Halichoeres, were influenced by wave exposure, although foraging in Halichoeres brasiliensis TP was not influenced by wave exposure. The IP in all three species were positively associated with rugosity and algal cover while the TP was positively associated with depth. Habitat complexity also influences foraging in these species. Group size influenced foraging activity, except in H. brasiliensis TP. We also found variations in microhabitat patches used for foraging between species and differences in the stomach contents between species and phases, showing that functional roles change in response to ontogenetic shifts.     

Testing the Stochastic Dynamic Methodology (StDM) as a management tool in a shallow temperate estuary of south Europe (Mondego, Portugal)

A long-term monitoring program has been carried out since the early 1990s in the Mondego estuary, on Portugal's west coast, which is presently under heavy human pressure. In this shallow warm-temperate estuary, a significant macroalgal proliferation has been observed, which is a clear sign of nutrient enrichment. As a result of competition with algae, the extension of the seagrass meadows (mainly Zostera noltii) has been reduced. The present paper examined the applicability of a holistic Stochastic Dynamic Methodology (StDM) in predicting the tendencies of trophic key-components (macrophytes, macroalgae, benthic macroinvertebrate and wading birds) as a response to the changes in estuarine environmental conditions. The StDM is a sequential modelling process developed in order to predict the ecological status of changed ecosystems, from which management strategies can be designed. The data used in the dynamic model construction included true gradients of environmental changes and was sampled from January 1993 to September 1995 and from December 1998 to December 2005. The dynamic model developed was preceded by a conventional multivariate statistical procedure performed to discriminate the significant relationships between the selected ecological components. The model validation was based on independent data collected from January 1996 to January 1997 and from February 1999 to April 2000 for all the state variables considered. Overall, the simulation results are encouraging since they seem to demonstrate the StDM reliability in capturing the trophic dynamics of the studied estuary, by predicting the behavioural pattern for the most part of the components selected, with a focus on the Zostera noltii meadows recovery after the implementation of important management measures.     

Territory characteristics and coexistence with heterospecifics in the Dartford warbler <Emphasis Type="Italic">Sylvia undata</Emphasis> across a habitat gradient

The study of successional gradients may help to understand the relative influence of habitat structure and competition on territory characteristics. Here, we evaluate the effects of vegetation cover, conspecific and heterospecific densities, and distance to the nearest neighbor on territory size, shape, and overlap in insectivorous birds. We studied these effects along a gradient of postfire habitat regeneration in which foliage cover and densities of focal species varied several-fold. We delineate 197 territories (minimum convex polygons) of the shrub-dwelling Dartford warbler (Sylvia undata) and 255 of the syntopic Sardinian (Sylvia melanocephala), subalpine (Sylvia cantillans) and melodious (Hippolais polyglotta) warblers at three plots in NE Catalonia (Spain and France) in 1987–2005. After accounting for the effect of the number of locations used to delineate polygons, generalized linear mixed models (GLMM) showed a reduction in territory area of the Dartford warbler as conspecific density increased and distance to nearest neighbor decreased, in accordance with the contender pressure hypothesis for territory size regulation. Heterospecific density was not included in the final model of territory size and the effect of habitat structure was marginal. Territory roundness was positively correlated with its size and with conspecific density, probably in relation to energetic constraints, and negatively with heterospecific density. Territorial exclusion was almost complete among Dartford warblers, whereas interspecific territory overlap was extensive and tended to increase with heterospecific density and with structural diversity along the gradient. Our results support the hypothesis that Mediterranean warbler coexistence derives from ecological segregation and not from interspecific territoriality.     

The effect of predation on artificial reef juvenile demersal fish species

There is a concern that artificial reefs (AR) may act purely as fishing aggregation devices. Predators attracted to ARs can influence the distribution and abundance of prey fish species. Determining the role of predators in AR is important in advancing the understanding of community interactions. This paper documents the effects of predation on fish assemblages of AR located near a coastal lagoon fish nursery. The Dicentrarchus labrax is a very opportunistic species preying on juveniles (0⁺ and 1⁺ age classes) of several demersal fish species on the ARs. Reef prey and sea bass abundance were negatively correlated. The mean numbers of prey per sea bass stomach increased with the increase of reef fish prey abundance, suggesting that predation has a significant influence, resulting in a decrease in prey abundance. Prey mortality (4–48%) of demersal reef fish associated species depends on bass density. Prey selection was related both with prey abundance and vulnerability. Results showed that D. labrax predation on AR-fish associated species can increase prey natural mortality. However, the role of bass predation on the ecological functioning of exploited ARs is not clear. There may be increases in local fishing yields due either to an increase in predator biomass through aggregation of sea bass attracted to ARs or to greater production. In contrast, predation on juveniles of economically important reef fish preys, especially the most frequent and abundant (Boops boops), can contribute to a decrease in recruitment to the fishery. Our results indicate that inter-specific interactions (predator–prey) are important in terms of conservation and management, as well as for the evaluation of the long-term effects of reef deployment. Thus, it is necessary to consider ecological interactions, such as predation, prior to the development and deployment of artificial habitats as a tool for rehabilitation.     

Effectiveness of Panama as an intercontinental land bridge for large mammals

Habitat fragmentation is a primary driver of wildlife loss, and establishment of biological corridors is a common strategy to mitigate this problem. A flagship example is the Mesoamerican Biological Corridor (MBC), which aims to connect protected forest areas between Mexico and Panama to allow dispersal and gene flow of forest organisms. Because forests across Central America have continued to degrade, the functioning of the MBC has been questioned, but reliable estimates of species occurrence were unavailable. Large mammals are suitable indicators of forest functioning, so we assessed their conservation status across the Isthmus of Panama, the narrowest section of the MBC. We used large-scale camera-trap surveys and hierarchical multispecies occupancy models in a Bayesian framework to estimate the occupancy of 9 medium to large mammals and developed an occupancy-weighted connectivity metric to evaluate species-specific functional connectivity. White-lipped peccary (Tayassu pecari), jaguar (Panthera onca), giant anteater (Myrmecophaga tridactyla), white-tailed deer (Odocoileus virginianus), and tapir (Tapirus bairdii) had low expected occupancy along the MBC in Panama. Puma (Puma concolor), red brocket deer (Mazama temama), ocelot (Leopardus pardalis), and collared peccary (Pecari tajacu), which are more adaptable, had higher occupancy, even in areas with low forest cover near infrastructure. However, the majority of species were subject to ≥1 gap that was larger than their known dispersal distances, suggesting poor connectivity along the MBC in Panama. Based on our results, forests in Darien, Donoso–Santa Fe, and La Amistad International Park are critical for survival of large terrestrial mammals in Panama and 2 areas need restoration.     

A climate-change vulnerability and adaptation assessment for Brazil's protected areas

Brazil hosts the largest expanse of tropical ecosystems within protected areas (PAs), which shelter biodiversity and support traditional human populations. We assessed the vulnerability to climate change of 993 terrestrial and coastal-marine Brazilian PAs by combining indicators of climatic-change hazard with indicators of PA resilience (size, native vegetation cover, and probability of climate-driven vegetation transition). This combination of indicators allows the identification of broad climate-change adaptation pathways. Seventeen PAs (20,611 km²) were highly vulnerable and located mainly in the Atlantic Forest (7 PAs), Cerrado (6), and the Amazon (4). Two hundred fifty-eight PAs (756,569 km²), located primarily in Amazonia, had a medium vulnerability. In the Amazon and western Cerrado, the projected severe climatic change and probability of climate-driven vegetation transition drove vulnerability up, despite the generally good conservation status of PAs. Over 80% of PAs of high or moderate vulnerability are managed by indigenous populations. Hence, besides the potential risks to biodiversity, the traditional knowledge and livelihoods of the people inhabiting these PAs may be threatened. In at least 870 PAs, primarily in the Atlantic Forest and Amazon, adaptation could happen with little or no intervention due to low climate-change hazard, high resilience status, or both. At least 20 PAs in the Atlantic Forest, Cerrado, and Amazonia should be targeted for stronger interventions (e.g., improvement of ecological connectivity), given their low resilience status. Despite being a first attempt to link vulnerability and adaptation in Brazilian PAs, we suggest that some of the PAs identified as highly or moderately vulnerable should be prioritized for testing potential adaptation strategies in the near future.     

Meta-analysis of the differential effects of habitat fragmentation and degradation on plant genetic diversity

Genetic diversity is a key factor for population survival and evolution. However, anthropogenic habitat disturbance can erode it, making populations more prone to extinction. Aiming to assess the global effects of habitat disturbance on plant genetic variation, we conducted a meta-analysis based on 92 case studies obtained from published literature. We compared the effects of habitat fragmentation and degradation on plant allelic richness and gene diversity (equivalent to expected heterozygosity) and tested whether such changes are sensitive to different life-forms, life spans, mating systems, and commonness. Anthropogenic disturbance had a negative effect on allelic richness, but not on gene diversity. Habitat fragmentation had a negative effect on genetic variation, whereas habitat degradation had no effect. When we examined the individual effects in fragmented habitats, allelic richness and gene diversity decreased, but this decrease was strongly dependent on certain plant traits. Specifically, common long-lived trees and self-incompatible species were more susceptible to allelic richness loss. Conversely, gene diversity decreased in common short-lived species (herbs) with self-compatible reproduction. In a wider geographical context, tropical plant communities were more sensitive to allelic richness loss, whereas temperate plant communities were more sensitive to gene diversity loss. Our synthesis showed complex responses to habitat disturbance among plant species. In many cases, the absence of effects could be the result of the time elapsed since the disturbance event or reproductive systems favoring self-pollination, but attention must be paid to those plant species that are more susceptible to losing genetic diversity, and appropriate conservation should be actions taken.