Modeling the buoyant flow of heated water discharged from surface and submerged side outfalls in shallow and deep water with a cross flow

In this study, a three-dimensional model was used to numerically study the buoyant flow, along with its mixing characteristics, of heated water discharged from the surface and submerged side outfalls in shallow and deep water with a cross flow. Hydraulic experimental data were used to evaluate the applicability of the model. The simulation results agree well with the experimental results, particularly, the jet trajectories, the dimensions of the recirculating zone, and the distribution of the dimensionless excess temperature. The level of accuracy of the simulation results of the present study is nearly identical to that of the results conducted by McGuirk and Rodi (1978). If the heated water is discharged into shallow water where the momentum flux ratio and the discharge densimetric Froude number are high, the submerged discharge method is better than the surface discharge method in terms of the scale of the recirculating zone and the minimum dilution. In deep water, where the momentum flux ratio and discharge densimetric Froude number are low, however, the submerged discharge method had few advantages. In shallow water, the discharge jet is deflected by the ambient cross flow, while forcing the ambient flow to bend towards the far bank for the full depth. For a submerged discharge in shallow water, the recirculating zone is the largest in the lowest layer but becomes smaller in the upper layer. As the water depth increases, the ambient flow goes over the jet and diminishes the blocking effect, thereby decreasing the bending of the jet.     

Mode of zooxanthella transmission does not affect zooxanthella diversity in acroporid corals

Two distinct modes of algal endosymbiont acquisition exist in corals, a direct transmission from the parental colony to the eggs and a larval or post-larval uptake from the environment. The former, maternal-transmission mode is expected to be a more closed system, while the latter is believed to be an open system. Here we test the hypothesis that the diversity of symbionts in closed systems is lower than that in open systems. We examine the identity and diversity of the algal endosymbionts (zooxanthellae) in 25 Montipora species sampled from Irian Jaya (Indonesia) and Magnetic Island (central Great Barrier Reef) and compare the results with those previously obtained from Acropora species, which belong to the same family. All Montipora colonies examined harbour clade C zooxanthellae, with two colonies harbouring both clade C and D zooxanthellae simultaneously. Two algal strains (named C· and D· in this study) present in Montipora have not been observed in Acropora, and may have co-evolved with Montipora. Symbiodinium C· shows approximately 5% sequence divergence from C strains observed in Acropora spp. and occurs in 76% of the colonies examined. Nevertheless, several other C strains commonly found in other corals occur in some of the Montipora colonies. Montipora species transmit their algal endosymbionts directly to the eggs, while Acropora species have to acquire zooxanthellae from the environment every generation. Contrary to our expectations, the diversity of zooxanthellae is similar for the two genera, indicating that the mode of symbiont transmission (i.e. maternal versus horizontal) does not affect symbiont diversity in acroporid corals.Communicated by M.S. Johnson, Crawley     

Release of phagocytosis-stimulating factor(s) by morula cells in a colonial ascidian

In vitro yeast phagocytosis by haemocytes of the compound ascidian Botryllus schlosseri was studied, with particular attention to interactions among different immunocyte types. It is demonstrated that the supernatant from haemocyte cultures matched with yeast cells contains factor(s) able to enhance yeast ingestion by Botryllus phagocytes. The increase in phagocytosis is not the consequence of yeast opsonisation, as the phagocytic index does not significantly increase when yeast cells, previously incubated in the culture media, are washed and re-suspended in filtered sea water. When haemocytes were fractionated by density gradient centrifugation and each band was incubated with yeast, the ability to stimulate phagocytosis was found in the supernatants from haemocyte cultures of fractions rich in morula cells (MC). Previous studies have demonstrated that MC express molecules recognised by anti-cytokine antibodies, as a consequence of the recognition of foreign molecules or cells. Our results indicate that molecules immunoreactive with anti-cytokine antibodies are required for modulating phagocyte activity, as the above-reported enhancing effect is completely absent in the presence of anti-IL-1-α and anti-TNF-α, but not of anti-rabbit-IgG antibodies, and they also highlight the presence of ‘cross-talk‘ between MC and phagocytes. A new scenario is therefore sketched, in which MC actively recognise non-self molecular patterns and, upon this recognition, release humoural factor(s) recognised by phagocytes, which modulate phagocytosis.     

Preliminary Measurements of Turbulence and Environmental Parameters in a Sub-Tropical Estuary of Eastern Australia

In natural systems, mixing is driven by turbulence, but current knowledge is limited in estuarine zones where predictions of contaminant dispersion are often inaccurate. A series of detailed field studies was conducted in a small sub-tropical creek in eastern Australia. Hydrodynamic, physio-chemical and ecological measurements were conducted simultaneously to assess the complexity of the estuarine zone, notably the interactions between turbulence and environment. The measurements were typically performed at high frequency over a tidal cycle. The results provide an original data set to complement long-term monitoring and a basis for a more detailed study of mixing in sub-tropical systems. Unlike many long-term observations, velocity and water quality scalars were measured herein with sufficient spatial and temporal resolutions to determine quantities of interest in the study of turbulence, while ecological indicators were sampled systematically and simultaneously. In particular the results yielded contrasted outcomes, and the finding impacts on the selection process for key water quality indicators.     

Innate immune defense of the sponge<Emphasis Type="Italic"> Suberites domuncula</Emphasis> against gram-positive bacteria: induction of lysozyme and AdaPTin

Sponges are filter feeders that are exposed to large amounts of bacteria present in their surrounding aqueous milieu. The characteristic cell wall component of gram-positive bacteria, peptidoglycan (PPG), was used as a model molecule to study the responsiveness of cells from the marine demosponge Suberites domuncula toward gram-positive bacteria. The sponge lysozyme, which hydrolyzes PPG, was isolated from the living sponge; in addition its gene was cloned (SDLYS) and expressed in Escherichia coli. Antibodies were raised against the recombinant protein to demonstrate that in the Western blot both molecules give the same signal. In situ hybridization with SDLYS as a probe showed that cells in the mesohyl, the gray cells, strongly react with SDLYS. Subsequent immunofluorescence studies with antibodies raised against lysozyme revealed that only bacteria react with anti-lysozyme and only those that are scattered within the mesohyl of the tissue. An adaptor gene (AdaPTin-1) was isolated from the same sponge species that encodes a putative protein involved in endosome formation. Based on its differential expression we conclude that sponge cells react to PPG with a rapid activation of endocytosis, followed by the release of lysozyme.Communicated by O. Kinne, Oldendorf/LuheThe cDNA sequences from Suberites domuncula have been deposited (EMBL/GenBank): cDNA for the lysozyme (SDLYS) under the accession number AJ699166 and the AdaPTin-1 cDNA (SDAP1) under AJ699167.     

Is benthic trophic structure affected by food quality? The Dogger Bank example

The aim of this study was to evaluate the relationship between food quality and trophic structure of macrobenthic communities of the Dogger Bank. Therefore, 21 stations along different depth gradients (a transect across the central Dogger Bank and at a station cross in the north-eastern part) were sampled and analysed for macrofauna trophic structure and food supply, indicated by phytopigment composition and organic matter contents of the sediment. The study revealed differences in the trophic structure of the benthic community in areas with contrasting food supply. The trophic structure reflected differences in relative quality of organic matter. The sandy sediments on top of the bank receiving intermediate quantities of high food quality were inhabited by high abundances of interface feeders and sand-licking amphipods of the genus Bathyporeia. The southern stations characterised by a comparatively high amount of intermediate food quality were dominated by interface feeders such as Amphiura filiformis. The northern and north-eastern stations showing the highest diversity of feeding types were characterised by a comparatively low, but highly variable input of intermediate-quality organic matter consisting of both fresh and degraded organic matter. Results are discussed with a special emphasis on specific Dogger Bank features such as benthic primary production and frontal system characteristics.Communicated by O. Kinne, Oldendorf/Luhe     

Crinoid phylogeny: a preliminary analysis (Echinodermata: Crinoidea)

We describe the first molecular and morphological analysis of extant crinoid high-level inter-relationships. Nuclear and mitochondrial gene sequences and a cladistically coded matrix of 30 morphological characters are presented, and analysed by phylogenetic methods. The molecular data were compiled from concatenated nuclear-encoded 18S rDNA, internal transcribed spacer 1, 5.8S rDNA, and internal transcribed spacer 2, together with part of mitochondrial 16S rDNA, and comprised 3,593 sites, of which 313 were parsimony-informative. The molecular and morphological analyses include data from the bourgueticrinid Bathycrinus; the antedonid comatulids Dorometra and Florometra; the cyrtocrinids Cyathidium, Gymnocrinus, and Holopus; the isocrinids Endoxocrinus, and two species of Metacrinus; as well as from Guillecrinus and Caledonicrinus, whose ordinal relationships are uncertain, together with morphological data from Proisocrinus. Because the molecular data include indel-rich regions, special attention was given to alignment procedure, and it was found that relatively low, gene-specific, gap penalties gave alignments from which congruent phylogenetic information was obtained from both well-aligned, indel-poor and potentially misaligned, indel-rich regions. The different sequence data partitions also gave essentially congruent results. The overall direction of evolution in the gene trees remains uncertain: an asteroid outgroup places the root on the branch adjacent to the slowly evolving isocrinids (consistent with palaeontological order of first appearances), but maximum likelihood analysis with a molecular clock places it elsewhere. Despite lineage-specific rate differences, the clock model was not excluded by a likelihood ratio test. Morphological analyses were unrooted. All analyses identified three clades, two of them generally well-supported. One well-supported clade (BCG) unites Bathycrinus and Guillecrinus with the representative (chimaeric) comatulid in a derived position, suggesting that comatulids originated from a sessile, stalked ancestor. In this connection it is noted that because the comatulid centrodorsal ossicle originates ontogenetically from the column, it is not strictly correct to describe comatulids as unstalked crinoids. A second, uniformly well-supported clade contains members of the Isocrinida, while the third clade contains Gymnocrinus, a well-established member of the Cyrtocrinida, together with the problematic taxon Caledonicrinus, currently classified as a bourgueticrinid. Another cyrtocrinid, Holopus, joins this clade with only weak molecular, but strong morphological support. In one morphological analysis Proisocrinus is weakly attached to the isocrinid clade. Only an unusual, divergent 18S rDNA sequence was obtained from the morphologically strange cyrtocrinid Cyathidium. Although not analysed in detail, features of this sequence suggested that it may be a PCR artefact, so that the apparently basal position of this taxon requires confirmation. If not an artefact, Cyathidium either diverged from the crinoid stem much earlier than has been recognised hitherto (i.e., it may be a Palaeozoic relic), or it has an atypically high rate of molecular evolution.Electronic Supplementary Material Supplementary material is available in the online version of this article at Communicated by J.P. Thorpe, Port Erin     

Distribution normality of pH and H<Superscript>+</Superscript> activity in soil

Soil pH, a log-transformed form of hydrogen ion (H⁺) activity, is often used for various statistics. However whether soil pH meets the requirement of distribution normality for statistical analyses is unknown. We studied the statistical suitability of both soil pH and H⁺ activity by examining their distribution normalities. Results show that the variability of H⁺ activity is higher and its distribution is skewer, which is significantly different from the normal and soil pH, regardless of soil conditions and analytical methods. Here we demonstrate that soil pH is more appropriate than the H⁺ activity for performing statistical analysis in terms of distribution normality.     

The effects of light and thallus scour from<Emphasis Type="Italic"> Ecklonia radiata</Emphasis> canopy on an associated foliose algal assemblage: the importance of photoacclimation

Kelp canopies have long been recognised for their influence on the structure of algal assemblages on sublittoral reefs. In Marmion Lagoon, Western Australia, we investigated how a canopy of the small kelp Ecklonia radiata affected the associated foliose algal assemblage and what potential mechanisms were responsible for the effects we observed. Light levels and physical abrasion (thallus scour) by an E. radiata canopy were manipulated in an orthogonal fixed-factor experiment that revealed that changes in light, but not thallus scour, had a significant effect on the composition of the algal assemblage. Reduced light levels were associated with a decrease in the Shannon-Wiener diversity index and an increased dominance of the foliose algae Pterocladia lucida and Rhodymenia sonderi. Photobiological investigations of three foliose species, P. lucida, R. sonderi and Chauviniella coriifolia indicated that they were able to photoacclimate to low light levels by increasing thallus absorption by up to 11%. Photoacclimation was also evident by an increase in the maximum rate of electron transport under low-light conditions. We conclude that the E. radiata canopy in Marmion Lagoon structures the foliose algal assemblage through the modification of the light environment and that this effect may be mediated by differences in the ability of different species of foliose algae to photoacclimate.Communicated by M.S. Johnson, Crawley