Clostridia dominate 16S rRNA gene libraries prepared from the hindgut of temperate marine herbivorous fishes

Bacterial diversity in the microbial communities of posterior gut sections of three temperate marine herbivorous fish species from New Zealand was characterised using Amplified Ribosomal DNA Restriction Analysis, and 16S rRNA gene amplification and sequencing methods. The fish were collected in 1999–2000 in the Hauraki Gulf, New Zealand (35°54’–36°24’S, 174°48’–175°25’E). The gastrointestinal bacterial communities of Kyphosus sydneyanus (Günther, 1886) (F. Kyphosidae), Odax pullus (Forster in Bloch and Schneider, 1801) (F. Labridae) and Aplodactylus arctidens Richardson, 1839 (F. Aplodactylidae) were dominated by five clades of bacteria, four of which belong to recognized clostridial clusters. The clone libraries of K. sydneyanus and O. pullus contained sequences from most of these clades, but were dominated by members of clostridial clusters XI and XIVa, respectively. The clone library of A. arctidens was dominated by members of clostridial cluster XIVb and an unassigned cluster containing Eubacterium desmolans and Papillibacter cinnaminovorans. The finding that strains of Firmicutes dominated the gastrointestinal microbial communities of all three fish species is consistent with the results of similar studies on terrestrial vertebrate herbivores. This work thus contributes to the view that gastrointestinal symbionts in some marine herbivorous fishes may play a similar role to those in terrestrial vertebrate herbivores studied to date.     

Spatial distribution of lead concentrations in urban surface soils of New Orleans, Louisiana USA

Immediately following hurricane Katrina concern was raised over the environmental impact of floodwaters on the city of New Orleans, especially in regard to human health. Several studies were conducted to determine the actual contaminant distribution throughout the city and surrounding wetlands by analyzing soil, sediment, and water for a variety of contaminants including organics, inorganics, and biologics. Preliminary investigations by The Institute of Environmental and Human Health at Texas Tech University concluded that soils and sediments contained pesticides, semi-volatiles, and metals, specifically arsenic, iron, and lead, at concentrations that could pose a significant risk to human health. Additional studies on New Orleans floodwaters revealed similar constituents as well as compounds commonly found in gasoline. More recently, it has been revealed that lead (Pb), arsenic, and vanadium are found intermittently throughout the city at concentrations greater than the human health soil screening levels (HHSSLs) of 400, 22 (non-cancer endpoint) and 390 μg/g, respectively. Of these, Pb appears to present the greatest exposure hazard to humans as a result of its extensive distribution in city soils. In this study, we spatially evaluated Pb concentrations across greater New Orleans surface soils. We established 128 sampling sites throughout New Orleans at approximately half-mile intervals. A soil sample was collected at each site and analyzed for Pb by ICP-AES. Soils from 19 (15%) of the sites had Pb concentrations exceeding the HHSSL threshold of 400 μg/g. It was determined that the highest concentrations of Pb were found in the south and west portions of the city. Pb concentrations found throughout New Orleans in this study were then incorporated into a geographic information system to create a spatial distribution model that can be further used to predict Pb exposure to humans in the city.     

Iteroparity in the variable environment of the salamander Ambystoma tigrinum

Simultaneous estimation of survival, reproduction, and movement is essential to understanding how species maximize lifetime reproduction in environments that vary across space and time. We conducted a four-year, capture-recapture study of three populations of eastern tiger salamanders (Ambystoma tigrinum tigrinum) and used multistate mark-recapture statistical methods to estimate the manner in which movement, survival, and breeding probabilities vary under different environmental conditions across years and among populations and habitats. We inferred how individuals may mitigate risks of mortality and reproductive failure by deferring breeding or by moving among populations. Movement probabilities among populations were extremely low despite high spatiotemporal variation in reproductive success and survival, suggesting possible costs to movements among breeding ponds. Breeding probabilities varied between wet and dry years and according to whether or not breeding was attempted in the previous year. Estimates of survival in the nonbreeding, forest habitat varied among populations but were consistent across time. Survival in breeding ponds was generally high in years with average or high precipitation, except for males in an especially ephemeral pond. A drought year incurred severe survival costs in all ponds to animals that attempted breeding. Female salamanders appear to defer these episodic survival costs of breeding by choosing not to breed in years when the risk of adult mortality is high. Using stochastic simulations of survival and breeding under historical climate conditions, we found that an interaction between breeding probabilities and mortality limits the probability of multiple breeding attempts differently between the sexes and among populations.     

Simulating Unstressed Crop Development and Growth Using the Unified Plant Growth Model (UPGM)

Since initial development of the EPIC model in 1989, the EPIC plant growth component has been incorporated into other erosion and crop management models (e.g., WEPS, WEPP, SWAT, ALMANAC, and GPFARM) and subsequently modified to meet research objectives of the model developers. This has resulted in different versions of the same base plant growth component. The objectives of this study are the following: (1) describe the standalone Unified Plant Growth Model (UPGM), initially derived from the WEPS plant growth model, to be used for merging enhancements from other EPIC-based plant growth models; and (2) describe and evaluate new phenology, seedling emergence, and canopy height sub-models derived from the Phenology Modular Modeling System (PhenologyMMS V1.2) and incorporated into UPGM. A 6-year (2005–2010) irrigated maize (Zea mays L.) study from northeast Colorado was used to calibrate and evaluate UPGM running both the original (i.e., based on WEPS) and new phenology, seedling emergence, and canopy height sub-models. Model statistics indicated the new sub-models usually resulted in better simulation results than the original sub-models. For example when comparing original and new sub-models, respectively, for predicting canopy height, the root mean square error (RMSE) was 53.7 and 40.7 cm, index of agreement (d) was 0.84 and 0.92, relative error (RE) was 26.0 and ?1.26 %, and normalized objective function (NOF) was 0.47 and 0.33. The new sub-models predict leaf number (old sub-models do not), with mean values for 4 years of 2.43 leaves (RMSE), 0.78 (d), 18.38 % (RE), and 0.27 (NOF). Simulating grain yield, final above ground biomass, and harvest index showed little difference when running the original or new sub-models. Both the new phenology and seedling emergence sub-models respond to varying water deficits, increasing the robustness of UPGM for more diverse environmental conditions. Future research will continue working to incorporate existing enhancements from other EPIC-based plant growth models to unify them into one model such as multispecies competition and N cycling.     

Trade‐offs and efficiencies in optimal budget‐constrained multispecies corridor networks

Conservation biologists recognize that a system of isolated protected areas will be necessary but insufficient to meet biodiversity objectives. Current approaches to connecting core conservation areas through corridors consider optimal corridor placement based on a single optimization goal: commonly, maximizing the movement for a target species across a network of protected areas. We show that designing corridors for single species based on purely ecological criteria leads to extremely expensive linkages that are suboptimal for multispecies connectivity objectives. Similarly, acquiring the least‐expensive linkages leads to ecologically poor solutions. We developed algorithms for optimizing corridors for multispecies use given a specific budget. We applied our approach in western Montana to demonstrate how the solutions may be used to evaluate trade‐offs in connectivity for 2 species with different habitat requirements, different core areas, and different conservation values under different budgets. We evaluated corridors that were optimal for each species individually and for both species jointly. Incorporating a budget constraint and jointly optimizing for both species resulted in corridors that were close to the individual species movement‐potential optima but with substantial cost savings. Our approach produced corridors that were within 14% and 11% of the best possible corridor connectivity for grizzly bears (Ursus arctos) and wolverines (Gulo gulo), respectively, and saved 75% of the cost. Similarly, joint optimization under a combined budget resulted in improved connectivity for both species relative to splitting the budget in 2 to optimize for each species individually. Our results demonstrate economies of scale and complementarities conservation planners can achieve by optimizing corridor designs for financial costs and for multiple species connectivity jointly. We believe that our approach will facilitate corridor conservation by reducing acquisition costs and by allowing derived corridors to more closely reflect conservation priorities.     

Similar soft-bottom polychaete diversity in Arctic and Antarctic marine inlets

The diversity of soft-bottom polychaete assemblages in one Antarctic (Admiralty Bay) and two Arctic (Kongsfjord and van Mijenfjord) localities was compared. The data sets included 79 (Admiralty Bay), 80 (Kongsfjord) and 44 (van Mijenfjord) samples collected with use of 0.1 m² van Veen grab. The number of species per sample in Kongsfjord (mean 19.9 ± 8.0 SD) was higher than that in Van Mijenfjord (13.7 ± 8.3) or Admiralty Bay (15.7 ± 9.4). The differences in species numbers reflected differences in numbers of individuals in samples: 310.4 ind/0.1 m² ± 178.0 in Kongsfjord, 132.7 ind/0.1 m² ± 88.7 in Van Mijenfjord and 138.9 ind/0.1 m² ± 91.5 in Admiralty Bay. The Hurlbert diversity for 50 individuals (ES _[50]) was similar at all sites: 10.7 ± 3.4 in Kongsfjord, 9.7 ± 4.2 in van Mijenfjord, 10.5 ± 4.9 in Admiralty Bay. The shape of species accumulation curves was also similar for all localities. There was no significant difference (at P < 0.05) either in the total number of species or in species richness as estimated by Chao1 and Chao2 estimators. The generic and family richness at three sites was also similar. We found no substantial differences in the distribution of species among families. At both poles Terebellidae, Ampharetidae, Maldanidae, Spionidae and Polynoidae were dominant in terms of species numbers. The similarity of infaunal polychaete diversity at the polar sites studied contrasts with the substantial differences reported for epi-megafauna. Our study suggests that the patterns of diversity of polar benthic communities are shaped by patterns of habitat heterogeneity which appears to mask any historical processes.     

Primary vegetative growth on an old tailings dam,Zawar mines

Tailings containing toxic qualities of heavy metals are a potential source of pollution. Stabilisation by vegetative methods have been found the most effective. In an attempt to vegetate tailings dams it has been noted that while certain milky latex containing plants can be grown without any preconditioning of the soil, almost any plant can be grown after proper conditioning. However, the plants grown there cannot be consumed by humans or cattle due to their high metal content.     

Six-phase heating™: The new power tool

The removal of dense non-aqueous phase liquids (DNAPL) in-situ remains one of the remediation industry's toughest burden. Numerous treatment methods have been applied in an effort to deal with this problem, most requiring many years of continued application to produce even marginally successful results. Current Environment Solutions (CES) has brought a new technology, known as Six-Phase Heating? (SPH), to bear on this problem. This new technology is proving capable of providing rapid remediation of DNAPL-contaminated sites at reasonable costs.     

Airborne particulate-associated polyaromatic hydrocarbons,n-alkanes,elemental and organic carbon in three European cities

Total suspended particulate (TSP) samples were collected weekly over a period of one year at four European sites during 1995/6. Two sites were in London-a Central London site (CL, St Paul's Cathedral) and a suburban North London site (NL, Bounds Green); the other two sites were in Porto, Portugal and Vienna, Austria. TSP was collected using a low volume sampler. Organic carbon (OC) and elemental carbon (EC) concentrations were measured using a thermal-optical carbon analyser. Parallel samplers collected TSP for subsequent GC-MS analysis of thirty-nine combustion-associated organic compounds; 16 polyaromatic hydrocarbons (PAHs) and 23 n-alkanes. OC and EC correlate well at all sites (r2 = 0.39-0.65), although the London inter-site correlations were low, suggesting that local sources of OC and EC have a significant influence on local concentrations. Concentrations do not vary widely across the four urban sites, despite the significant differences in urban characteristics. Seasonal patterns of OC:EC ratios were similar at the London and Vienna sites, with highest ratios in autumn and winter, and annual mean OC:EC ratios were identical at these sites. The Carbon Preference Index (CPI) indicated vehicle emissions to have a stronger influence over particulate concentrations at the Vienna and central London sites; there was a stronger biogenic signature in north London and Porto. In addition, two PAH compounds (pyrene and fluoranthene) previously associated with diesel exhaust, were correlated with OC and EC concentrations at the London and Vienna sites.