Low impact of phenanthrene dissipation on the bacterial community in grassland soil

The effect of phenanthrene on the bacterial community was studied on permanent grassland soil historically presenting low contamination (i.e. less than 1 mg kg^?1) by polycyclic aromatic hydrocarbons (PAHs). Microcosms of soil were spiked with phenanthrene at 300 mg kg^?1. After 30 days of incubation, the phenanthrene concentration decreased rapidly until its total dissipation within 90 days. During this incubation period, significant changes of the total bacterial community diversity were observed, as assessed by automated-ribosomal intergenic spacer analysis fingerprinting. In order to get a deeper view of the effect of phenanthrene on the bacterial community, the abundances of ten phyla and classes (Actinobacteria, Acidobacteria, Bacteroidetes, Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Firmicutes, Verrucomicrobiales, Gemmatimonadetes, and Planctomycetes) were monitored by quantitative polymerase chain reaction performed on soil DNA extracts. Interestingly, abundances of some bacterial taxa significantly changed as compared with controls. Moreover, among these bacterial groups impacted by phenanthrene spiking, some of them presented the potential of phenanthrene degradation, as assessed by PAH-ring hydroxylating dioxygenase (PAH-RHD_α) gene detection. However, neither the abundance nor the diversity of the PAH-RHD_α genes was significantly impacted by phenanthrene spiking, highlighting the low impact of this organic contaminant on the functional bacterial diversities in grassland soil.     

Silver behaviour along the salinity gradient of the Gironde Estuary

Dissolved and particulate Ag concentrations (Ag_D and Ag_P, respectively) were measured in surface water and suspended particulate matter (SPM) along the salinity gradient of the Gironde Estuary, South West France, during three cruises (2008–2009) covering contrasting hydrological conditions, i.e. two cruises during intermediate and one during high freshwater discharge (~740 and ~2,300 m³/s). Silver distribution reflected non-conservative behaviour with 60–70 % of Ag_P in freshwater particles being desorbed by chlorocomplexation. The amount of Ag_P desorbed was similar to the so-called reactive, potentially bioavailable Ag_P fraction (60?±?4 %) extracted from river SPM by 1 M HCl. Both Ag_P (0.22?±?0.05 mg/kg) and Ag_P/Th_P (0.025–0.028) in the residual fraction of fluvial and estuarine SPM were similar to those in SPM from the estuary mouth and in coastal sediments from the shelf off the Gironde Estuary, indicating that chlorocomplexation desorbs the reactive Ag_P. The data show that desorption of reactive Ag_P mainly occurs inside the estuary during low and intermediate discharge, whereas expulsion of partially Ag_P-depleted SPM (Ag_P/Th_P ~0.040) during the flood implies ongoing desorption in the coastal ocean, e.g. in the nearby oyster production areas (Marennes-Oléron Bay). The highest Ag_D levels (6–8 ng/L) occurred in the mid-salinity range (15–20) of the Gironde Estuary and were decoupled from freshwater discharge. In the maximum turbidity zone, Ag_D were at minimum, showing that high SPM concentrations (a) induce Ag_D adsorption in estuarine freshwater and (b) counterbalance Ag_P desorption in the low salinity range (1–3). Accordingly, Ag behaviour in turbid estuaries appears to be controlled by the balance between salinity and SPM levels. The first estimates of daily Ag_D net fluxes for the Gironde Estuary (Boyle’s method) showed relatively stable theoretical Ag_D at zero salinity (Ag _D ⁰ = 25–30 ng/L) for the contrasting hydrological situations. Accordingly, Ag_D net fluxes were very similar for the situations with intermediate discharge (1.7 and 1.6 g/day) and clearly higher during the flood (5.0 g/day) despite incomplete desorption. Applying Ag _D ⁰ to the annual freshwater inputs provided an annual net Ag_D flux (0.64–0.89 t/year in 2008 and 0.56–0.77 t/year in 2009) that was 12–50 times greater than the Ag_D gross flux. This estimate was consistent with net Ag_D flux estimates obtained from gross Ag_P flux considering 60 % desorption in the estuarine salinity gradient.     

Kinetics of steel slag leaching: Batch tests and modeling

Reusing steel slag as an aggregate for road construction requires to characterize the leaching kinetics and metal releases. In this study, basic oxygen furnace (BOF) steel slag were subjected to batch leaching tests at liquid to solid ratios (L/S) of 10 and 100 over 30 days; the leachate chemistry being regularly sampled in time. A geochemical model of the steel slag is developed and validated from experimental data, particularly the evolution with leaching of mineralogical composition of the slag and trace element speciation. Kinetics is necessary for modeling the primary phase leaching, whereas a simple thermodynamic equilibrium approach can be used for secondary phase precipitation. The proposed model simulates the kinetically-controlled dissolution (hydrolysis) of primary phases, the precipitation of secondary phases (C-S-H, hydroxide and spinel), the pH and redox conditions, and the progressive release of major elements as well as the metals Cr and V. Modeling indicates that the dilution effect of the L/S ratio is often coupled to solubility-controlled processes, which are sensitive to both the pH and the redox potential. A sensitivity analysis of kinetic uncertainties on the modeling of element releases is performed.     

Long-term records of cadmium and silver contamination in sediments and oysters from the Gironde fluvial-estuarine continuum - evidence of changing silver sources

The Gironde fluvial estuarine system is impacted by historic metal pollution (e.g. Cd, Zn, Hg) and oysters (Crassostrea gigas) from the estuary mouth have shown extremely high Cd concentrations for decades. Based on recent work (Chiffoleau et al., 2005) revealing anomalously high Ag concentrations (up to 65 mg kg⁻¹; dry weight) in Gironde oysters, we compared long-term (∼1955-2001) records of Ag and Cd concentrations in reservoir sediment with the respective concentrations in oysters collected between 1979 and 2010 to identify the origin and historical trend of the recently discovered Ag anomaly. Sediment cores from two reservoirs upstream and downstream from the main metal pollution source provided information on (i) geochemical background (upstream; Ag: ∼0.3 mg kg⁻¹; Cd: ∼0.8 mg kg⁻¹) and (ii) historical trends in Ag and Cd pollution. The results showed parallel concentration-depth profiles of Ag and Cd supporting a common source and transport. Decreasing concentrations since 1986 (Cd: from 300 to 11 mg kg⁻¹; Ag: from 6.7 to 0.43 mg kg⁻¹) reflected the termination of Zn ore treatment in the Decazeville basin followed by remediation actions. Accordingly, Cd concentrations in oysters decreased after 1988 (from 109 to 26 mg kg⁻¹, dry weight (dw)), while Ag bioaccumulation increased from 38 up to 116 mg kg⁻¹, dw after 1993. Based on the Cd/Ag ratio (Cd/Ag ∼ 2) in oysters sampled before the termination of zinc ore treatment (1981-1985) and assuming that nearly all Cd in oysters originated from the metal point source, we estimated the respective contribution of Ag from this source to Ag concentrations in oysters. The evolution over the past 30 years clearly suggested that the recent, unexplained Ag concentrations in oysters are due to increasing contributions (>70% after 1999) by other sources, such as photography, electronics and emerging Ag applications/materials.     

Importance of conserving large and old trees to continuity of tree-related microhabitats

Protecting structural features, such as tree-related microhabitats (TreMs), is a cost-effective tool crucial for biodiversity conservation applicable to large forested landscapes. Although the development of TreMs is influenced by tree diameter, species, and vitality, the relationships between tree age and TreM profile remain poorly understood. Using a tree-ring-based approach and a large data set of 8038 trees, we modeled the effects of tree age, diameter, and site characteristics on TreM richness and occurrence across some of the most intact primary temperate forests in Europe, including mixed beech and spruce forests. We observed an overall increase in TreM richness on old and large trees in both forest types. The occurrence of specific TreM groups was variably related to tree age and diameter, but some TreM groups (e.g., epiphytes) had a stronger positive relationship with tree species and elevation. Although many TreM groups were positively associated with tree age and diameter, only two TreM groups in spruce stands reacted exclusively to tree age (insect galleries and exposed sapwood) without responding to diameter. Thus, the retention of trees for conservation purposes based on tree diameter appears to be a generally feasible approach with a rather low risk of underrepresentation of TreMs. Because greater tree age and diameter positively affected TreM development, placing a greater emphasis on conserving large trees and allowing them to reach older ages, for example, through the establishment of conservation reserves, would better maintain the continuity of TreM resource and associated biodiversity. However, this approach may be difficult due to the widespread intensification of forest management and global climate change.     

Urban soil quality of Raipur,Chhattisgarh, India

Soil quality in urban areas in India is degraded due to multiple anthropogenic activities. The objectives of this work are to determine the concentration variations, toxicity, and sources of carbons, metals, and ions in the surface soil of Raipur, the industrialized capital city of Chhattisgarh state, India. High concentrations of Al, K, Ca, Ti, Fe, and elemental carbon (EC) were registered. Relatively lower concentrations of V, Cr, Mn, Ni, Cu, Zn, Sr, Ba, Pb, organic carbon (OC), and carbonate carbon (CC), as well as ions (viz. F^–, Cl^–, NO₃^–, SO₄^2–, Na⁺, K⁺, Mg²⁺, and Ca²⁺), were also recorded. EC was found to be one of the major pollutants, although enrichment factors pointed to high contamination with SO₄^2–, K⁺, Mg²⁺_, Cr, Mn, and Pb; and extreme contamination with NO₃^– and Ca²⁺. The spatial and temporal variations, enrichment factors, toxicity, and sources of the chemical species detected in the soil are discussed.     

BRC4Env,a network of Biological Resource Centres for research in environmental and agricultural sciences

The Biological Resource Centre for the Environment BRC4Env is a network of Biological Resource Centres (BRCs) and collections whose leading objectives are to improve the visibility of genetic and biological resources maintained by its BRCs and collections and to facilitate their use by a large research community, from agriculture research to life sciences and environmental sciences. Its added value relies on sharing skills, harmonizing practices, triggering projects in comparative biology, and ultimately proposing a single-entry portal to facilitate access to documented samples, taking into account the partnership policies of research institutions as well as the legal frame which varies with the biological nature of resources. BRC4Env currently includes three BRCs: the Centre for Soil Genetic Resources of the platform GenoSol, in partnership with the European Conservatory of Soil Samples; the Egg Parasitoids Collection (EP-Coll); and the collection of ichthyological samples, Colisa. BRC4Env is also associated to several biological collections: microbial consortia (entomopathogenic bacteria, freshwater microalgae…), terrestrial arthropods, nematodes (plant parasitic, entomopathogenic, animal parasitic...), and small mammals. The BRCs and collections of BRC4Env are involved in partnership with academic scientists, as well as private companies, in the fields of medicinal mining, biocontrol, sustainable agriculture, and additional sectors. Moreover, the staff of the BRCs is involved in many training courses for students from French licence degree to Ph.D, engineers, as well as ongoing training.     

Zinc,lead, and cadmium tolerance and accumulation in Cistus libanotis,Cistus albidus,and Cistus salviifolius: Perspectives on phytoremediation

Heavy metal contamination is of particular concern for human health and the environment. Phytoremediation is an emerging cost‐effective strategy to remediate heavy metal contaminated soil. However, this technique is limited by the small number of plants that are tolerant to heavy metals and are also accumulators. This study assayed zinc, lead, and cadmium tolerance and accumulation in Cistus libanotis, Cistus albidus, and Cistus salviifolius. The plants were cultivated in hydroponic conditions and exposed to different concentrations of Pb(NO₃)₂ (100 and 200 µM), ZnSO₄ (100 and 200 µM), or CdCl₂ (10 and 20 µM) for 3 weeks. Plant biomass and metal accumulation in roots and aboveground parts varied greatly among the species. All three species appeared to be sensitive to Zn. However, C. albidus displayed strong tolerance to Pb and accumulated large quantities of Pb and Cd in its roots. C. libanotis accumulated large quantities of Pb and Cd in its aboveground parts. C. libanotis can thus be classified as a Pb and Cd accumulator species. The study results show that C. albidus is suitable for phytostabilization of Pb‐contaminated soils, while C. libanotis can be used for phytoextraction of both Pb and Cd.     

Considering the functional value of common marine species as a conservation stake: the case of sandmason worm Lanice conchilega (Pallas 1766) (Annelida, Polychaeta) beds

Conservation of the marine environment mainly focuses on threatened elements and more precisely on vulnerable and endangered species like birds and mammals. When dealing with the conservation of marine habitats, the scientific community is mainly interested in hot spots of diversity, like seagrass beds in Europe, or hot spots of endemism, like coral reefs in tropical areas. Nevertheless, using the example of a common and widespread marine invertebrate, the sandmason worm (Lanice conchilega, Polychaeta, Terebellidae), we show that vulnerability and rarity are not the only criteria to take into account in order to select the best natural element for conservation. This species can form dense beds that increase biodiversity, are attractive feeding grounds for birds and fishes, and have a high socioeconomic value. In consequence, they have a high functional value that should be considered as an important conservation stake. Through the example of the Chausey archipelago and the Bay of the Mont Saint-Michel (France), we propose a synthetic interdisciplinary approach to evaluate the conservation needs of these beds. The issue is even more pressing when one considers that these natural elements and many similar ones still do not benefit from any legal protection in Europe despite their high heritage value.     

Evaluation of nitrogen dioxide photolysis rates in an urban area using data from the 1997 Southern California Ozone Study

The photolysis of nitrogen dioxide and formaldehyde are two of the most influential reactions in the formation of photochemical air pollution, and their rates are computed using actinic flux determined from a radiative transfer model. In this study, we compare predicted and measured nitrogen dioxide photolysis rate coefficients (j_NO2). We used the Tropospheric Ultraviolet-Visible (TUV) radiation transfer model to predict j_NO2 values corresponding to measurements performed in Riverside, California as part of the 1997 Southern California Ozone Study (SCOS’97). Spectrally resolved irradiance measured at the same site allowed us to determine atmospheric optical properties, such as aerosol optical depth and total ozone column, that are needed as inputs for the radiative transfer model. Matching measurements of aerosol optical depth, ozone column, and j_NO2 were obtained for 14 days during SCOS’97. By using collocated measurements of the light extinction caused by aerosols and ozone over the full height of the atmosphere as model input, it was possible to predict sudden changes in j_NO2 resulting from atmospheric variability. While the diurnal profile of the rate coefficient was readily reproduced, j_NO2 model predicted values were found to be consistently higher than measured values. The bias between measured and predicted values was 17–36%, depending on the assumed single scattering albedo. By statistical analysis, we restricted the most likely values of the single scattering albedo to a range that produced bias on the order of 20–25%. It is likely that measurement error is responsible for a significant part of the bias. The aerosol single scattering albedo was found to be a major source of uncertainty in radiative transfer model predictions. Our best estimate indicates its average value at UV-wavelengths for the period of interest is between 0.77 and 0.85.