A 2019 Outbreak Investigation of Hepatitis A Virus Infections in the United States Linked to Imported Fresh Blackberries

Globally, hepatitis A virus (HAV) is one of the most common agents of acute viral hepatitis and causes approximately 1.4 million cases and 90,000 deaths annually despite the existence of an effective vaccine. In 2019, federal, state, and local partners investigated a multi-state outbreak of HAV infections linked to fresh blackberries sourced from multiple suppliers in Michoacán, Mexico. A total of 20 individuals with outbreak-related HAV infection were reported in seven states, including 11 hospitalizations, and no deaths. The Food and Drug Administration (FDA), the Centers for Disease Control and Prevention (CDC), and Nebraska State and Douglas County Health Departments conducted a traceback investigation for fresh blackberries reportedly purchased by 16 ill persons. These individuals reported purchasing fresh blackberries from 11 points of service from September 16 through 29, 2019 and their clinical isolates assessed through next-generation sequencing and phylogenetic analysis were genetically similar. The traceback investigation did not reveal convergence on a common grower or packing house within Mexico, but all of the blackberries were harvested from growers in Michoacán, Mexico. FDA did not detect the pathogen after analyzing fresh blackberry samples from four distributors, one consumer, and from nine importers at the port of entry as a result of increased screening. Challenges included gaps in traceability practices and the inability to recover the pathogen from sample testing, which prohibited investigators from determining the source of the implicated blackberries. This multi-state outbreak illustrated the importance of food safety practices for fresh produce that may contribute to foodborne illness outbreaks.

     

Why do most tropical animals reproduce seasonally? Testing hypotheses on an Australian snake

Most species reproduce seasonally, even in the tropics where activity occurs year-round. Squamate reptiles provide ideal model organisms to clarify the ultimate (adaptive) reasons for the restriction of reproduction to specific times of year. Females of almost all temperate-zone reptile species produce their eggs or offspring in the warmest time of the year, thereby synchronizing embryogenesis with high ambient temperatures. However, although tropical reptiles are freed from this thermal constraint, most do not reproduce year-round. Seasonal reproduction in tropical reptiles might be driven by biotic factors (e.g., peak periods of predation on eggs or hatchlings, or food for hatchlings) or abiotic factors (e.g., seasonal availability of suitably moist incubation conditions). Keelback snakes (Tropidonophis mairii, Colubridae) in tropical Australia reproduce from April to November, but with a major peak in May-June. Our field studies falsify hypotheses that invoke biotic factors as explanations for this pattern: the timing of nesting does not minimize predation on eggs, nor maximize food availability or survival rates for hatchlings. Instead, our data implicate abiotic factors: female keelbacks nest most intensely soon after the cessation of monsoonal rains when soils are moist enough to sustain optimal embryogenesis (wetter nests produce larger hatchlings, that are more likely to survive) but are unlikely to become waterlogged (which is lethal to eggs). Thus, abiotic factors may favor seasonal reproduction in tropical as well as temperate-zone animals.     

Dark, bitter-tasting nectar functions as a filter of flower visitors in a bird-pollinated plant

Floral nectar is offered by plants to animals as a reward for pollination. While nectar is typically a clear liquid containing sugar and trace amounts of amino acids, colored nectar has evolved in several plant families. Here we explore the functional significance of the phenolic compounds that impart a dark brown color to the nectar of the South African succulent shrub Aloe vryheidensis. Flowers of this aloe are visited for their nectar by a suite of short-billed birds that are occasional nectarivores, including bulbuls, white-eyes, rock thrushes, and chats. Dark-capped Bulbuls were more likely to probe model flowers containing dark nectar than those containing clear nectar, suggesting a potential signaling function for dark nectar. However, the main effect of the phenolics appears to be to repel "unwanted" nectarivores that find their bitter taste unpalatable. Nectar-feeding honey bees and sunbirds are morphologically mismatched for pollinating A. vryheidensis flowers and strongly reject its nectar. However, the frugivorous and insectivorous birds that effectively pollinate this aloe are seemingly unaffected by the nectar's bitter taste. Thus the dark phenolic component of the nectar appears to function as a floral filter by attracting some animals visually and deterring others by its taste.     

Wintertime vertical variations in particulate matter (PM) and precursor concentrations in the San Joaquin Valley during the California Regional Coarse PM/Fine PM Air Quality Study

Air quality monitoring was conducted at a rural site with a tower in the middle of California's San Joaquin Valley (SJV) and at elevated sites in the foothills and mountains surrounding the SJV for the California Regional PM10/ PM2.5 Air Quality Study. Measurements at the surface and n a tower at 90 m were collected in Angiola, CA, from December 2000 through February 2001 and included hourly black carbon (BC), particle counts from optical particle counters, nitric oxide, ozone, temperature, relative humidity, wind speed, and direction. Boundary site measurements were made primarily using 24-hr integrated particulate matter (PM) samples. These measurements were used to understand the vertical variations of PM and PM precursors, the effect of stratification in the winter on concentrations and chemistry aloft and at the surface, and the impact of aloft-versus-surface transport on PM concentrations. Vertical variations of concentrations differed among individual species. The stratification may be important to atmospheric chemistry processes, particularly nighttime nitrate formation aloft, because NO2 appeared to be oxidized by ozone in the stratified aloft layer. Additionally, increases in accumulation-mode particle concentrations in the aloft layer during a fine PM (PM2.5) episode corresponded with increases in aloft nitrate, demonstrating the likelihood of an aloft nighttime nitrate formation mechanism. Evidence of local transport at the surface and regional transport aloft was found; transport processes also varied among the species. The distribution of BC appeared to be regional, and BC was often uniformly mixed vertically. Overall, the combination of time-resolved tower and surface measurements provided important insight into PM stratification, formation, and transport.     

Processes influencing secondary aerosol formation in the San Joaquin Valley during winter

Air quality data collected in the California Regional PM10/ PM(2.5) Air Quality Study (CRPAQS) are analyzed to qualitatively assess the processes affecting secondary aerosol formation in the San Joaquin Valley (SJV). This region experiences some of the highest fine particulate matter (PM(2.5)) mass concentrations in California (< or = 188 microg/m3 24-hr average), and secondary aerosol components (as a group) frequently constitute over half of the fine aerosol mass in winter. The analyses are based on 15 days of high-frequency filter and canister measurements and several months of wintertime continuous gas and aerosol measurements. The phase-partitioning of nitrogen oxide (NO(x))-related nitrogen species and carbonaceous species shows that concentrations of gaseous precursor species are far more abundant than measured secondary aerosol nitrate or estimated secondary organic aerosols. Comparisons of ammonia and nitric acid concentrations indicate that ammonium nitrate formation is limited by the availability of nitric acid rather than ammonia. Time-resolved aerosol nitrate data collected at the surface and on a 90-m tower suggest that both the daytime and nighttime nitric acid formation pathways are active, and entrainment of aerosol nitrate formed aloft at night may explain the spatial homogeneity of nitrate in the SJV. NO(x) and volatile organic compound (VOC) emissions plus background O3 levels are expected to determine NO(x) oxidation and nitric acid production rates, which currently control the ammonium nitrate levels in the SJV. Secondary organic aerosol formation is significant in winter, especially in the Fresno urban area. Formation of secondary organic aerosol is more likely limited by the rate of VOC oxidation than the availability of VOC precursors in winter.     

Perchlorate in fish from a contaminated site in east-central Texas

Perchlorate, a known thyroid endocrine disruptor, contaminates surface waters near military instillations where solid fuel rocket motors are manufactured or assembled. To assess potential perchlorate exposure to fish and the human population which may feed on them, fish were collected around the Naval Weapons Industrial Reserve Plant in McLennan County, TX, and analyzed for the presence of the perchlorate anion. The sampling sites included Lake Waco and Belton Lake, and several streams and rivers within their watersheds. The general tendency was that perchlorate was only found in a few species sampled, and perchlorate was not detected in every individual within these species. When detected in the fish, perchlorate tissue concentrations were greater than that in the water. This may be due to highly variable perchlorate concentrations in the water coupled with individual-level variation in elimination from the body, or to routes of exposure other than water.     

Late Pleistocene dispersal of Indian-Pacific sardine populations in an ancient lineage of the genusSardinops

Temperate sardines fall into two related monotypic genera,Sardina andSardinops. Sardina exists as a cluster of subpopulations in the northeastern Atlantic and Mediterranean, andSardinops encompasses five geographically-isolated regional populations: (1) South Africa-Namibia, (2) Australia-New Zealand, (3) Chile-Peru, (4) Mexico-California and (5) Japan-Russia. We surveyed electrophoretic variability in the products of 34 protein encoding loci inSardina (N=26) and the five Indian-Pacific populations ofSardinops (N=222), collected from 1983 to 1991. Nei's genetic distances () between samples ofSardina andSardinops averaged 1.04 and are typical of distances between species of related genera.s between the regional forms ofSardinops were <-0.011, indicating thatSardinops consists of a single species with widely-scattered subpopulations. Assuming a molecular clock calibrated by the rise of the Panama Isthmus and the opening of the Bering Strait, these genetic distances correspond to times since divergence of <200 000 yr. AlthoughSardinops populations showed a significant degree of allele-frequency heterogeneity (F _ST, a measure of population differentiation, averaged 0.085 over 8 polymorphic loci), the distribution of genetic distances and tests of allele-frequency heterogeneity could not distinguished between hypotheses of north-south antitropical or east-west oceanic dispersal. Low levels of gene diversity inSardinops and mutation-drift disequilibria are consistent with a strong reduction in population size before the Late Pleistocene dispersal to the corners of the Indian-Pacific Oceans of an ancestralSardinops population.     

Condition of the Mid-Atlantic Estuaries: Production of a State of the Environment Report

The U.S. Environmental Protection Agency has released a report entitled Condition of the Mid-Atlantic Estuaries. That report summarizes the findings of several studies conducted by federal and state agencies and academic institutions in Chesapeake Bay, Delaware Estuary, and the coastal bays of Delaware, Maryland, and Virginia, and simultaneously addresses two distinct audiences: environmental managers and the general public. This paper documents the process of preparing the Estuaries Report, emphasizing the lessons learned in merging information from a wide-variety of sources and in reporting the results to multiple audiences. The major difficulties in preparing the report included: 1) choosing a format and topics that adequately addressed both environmental managers and the public, 2) resolving spatial and temporal disparities in the assembled data sets, and 3) establishing threshold values that distinguished between acceptable and unacceptable conditions in indicators. Our solutions to these challenges and alternatives are discussed. We conclude that a small team of knowledgeable scientists can effectively merge the information of diverse sources into a document that is useful to both environmental managers and the interested public. However, considerable interaction between the team and other scientists was necessary to resolve ambiguities and assure relevancy and accuracy. These findings support the proposition that the vast sources of existing environmental information can be easily and effectively used to assess the ecological condition across large regions.