Gulf War agents trigger discrete transcriptional changes in human neuronal cells

Reports on Gulf War illness (GWI) implicated the use of the pesticide permethrin (PER), and the insect repellent N,N-diethyl-m-toluamide (DEET), in its etiology, as well as pyridostigmine bromide (PB), which was given as a prophylactic treatment against nerve agent exposure. Using Affymetrix microarrays the genomic response of human neuronal SHSY-5Y cells to 10 days of exposure to these agents was characterized and profiles of gene modulation unique to each treatment were demonstrated. In particular, a significantly greater impact of PER was observed compared to the other treatments. The Ingenuity Pathway Analysis knowledgebase was used to analyze the genomic datasets and attribute functional consequences to the effects of related genes, which were significantly up- or down-regulated in response to different treatments. Canonical pathways shown to be significantly modulated at the genomic level in response to exposure included cellular mechanisms, which might contribute to the clinical presentation in GWI patients and thus be targeted for further investigation as potential targets for therapeutic intervention.     

The Brown Trout Population at Loch Fleet Eight Years After Liming

Abstract

At the start of the Loch Fleet Project in 1984, the Loch and the upper 7 km of its efferent stream were found to be devoid of trout (Salmo trutta) as a result of acidification. Following the liming treatments applied to the catchment, from 1986 the formerly toxic water quality conditions (pH ～ 4.5, calcium ～ 1 mgl^?1, elevated aluminium and heavy metal levels) were eliminated, and trout were reintroduced on two occasions, in 1987 and 1988. A total of 520 fish were stocked, at a combined density equivalent to 5.5 kg ha^?1. Surveys of the loch and stream populations were carried out annually until 1993 to monitor their development, using a range of techniques, including electrofishing, gill-netting, seine-netting, spawner trapping and mark-release recapture methods. Length and scale- analysis were used to investigate fish growth.

The trout population in Loch Fleet expanded rapidly as a result of natural spawning in the loch's main feeder stream, augmented by the use of an artificial spawning bed which was constructed at the loch outlet in 1990. in mid-1983 the stock density, estimated by mark-recapture census methods, had increased to 24.9 kg ha^?1. Poor recruitment in the years 1991–93, however, reduced the rate of expansion and resulted in a population comprising mainly older individuals. the poor recruitment in these years was not fully explained but was not caused by water quality and was most likely a result of fry washout by spring spates.

Fish growth rates were high initially and were estimated on the basis of the Elliott trout growth model to be optimal for the prevailing water temperature regime of the loch. By 1991, growth rates had fallen, probably as a result of competition for food, but showed signs of recovery towards the end of the study period in 1993, following the period of lower population densities of young fish.

Trout rapidly repopulated the loch's outlet stream after 1987 but have remained sparse and have shown no signs of spawning within most of the stream. Water analyses have shown that the liming of the Loch Fleet catchment has minimal impact on downstream waters when flows are high, so that potentially toxic acid episodes have not been prevented.     

An Application of a Modified Ecological Footprint Method and Structural Path Analysis in a Comparative Institutional Study

This paper presents an application of a modified ecological footprint method, using a regional, disturbance-based approach. In contrast to conventional institutional ecological footprint calculations, energy and land use resulting from all upstream production processes are explored by employing an input-output framework. Ecological footprints are calculated for two research institutions: the School of Physics (SoP) at the University of Sydney, and the Sustainable Ecosystems (CSE) Department of the Commonwealth Scientific and Industrial Research Organisation. These are broken down further in terms of land disturbance and greenhouse gas emissions, and as a function of production layer. To enable the use of the results in policy formulation, the ecological footprints are decomposed into detailed contributing paths, which are ranked according to their importance, using structural path analysis. The paper demonstrates that a considerable proportion of impacts occur upstream in industrial production. Thus a significant result of the study is the weight of obscure paths in the total footprints and, therefore, the importance of conducting an holistic assessment in order to ensure all upstream contributions are captured in the final impact of the institution.     

Limited population structure in Northern and Spotted Wolffishes (<Emphasis Type="Italic">Anarhichas denticulatus</Emphasis> and <Emphasis Type="Italic">A. minor</Emphasis>) despite low apparent dispersal potential

Northern and Spotted Wolffishes (Anarhichas denticulatus and A. minor) are demersal marine fishes listed as “threatened” in Canadian waters. Both species have unusually large benthic eggs and large size at hatch, which should reduce passive dispersal. We examined population differentiation with microsatellite and AFLP loci across the ranges of both species in the North Atlantic Ocean. Although significant population structure was documented, differentiation was less than expected based on knowledge of life history characteristics. Significant differentiation was found in Northern Wolffish between the Barents Sea and other samples based on both microsatellite and AFLP data. In contrast, population structure in the Spotted Wolffish was notably weaker, particularly with microsatellites. Both species were characterized by low genetic diversity for marine fishes and had significantly lower genetic diversity than the congeneric Atlantic Wolffish. This finding was consistent with the conservation status of these three species and suggests potential vulnerability to over-exploitation in Northern and Spotted Wolffishes.     

Social networks and models for collective motion in animals

The theory of collective motion and the study of animal social networks have, each individually, received much attention. Currently, most models of collective motion do not consider social network structure. The implications for considering collective motion and social networks together are likely to be important. Social networks could determine how populations move in, split up into and form separate groups (social networks affecting collective motion). Conversely, collective movement could change the structure of social networks by creating social ties that did not exist previously and maintaining existing ties (collective motion affecting social networks). Thus, there is a need to combine the two areas of research and examine the relationship between network structure and collective motion. Here, we review different modelling approaches that combine social network structures and collective motion. Although many of these models have not been developed with ecology in mind, they present a current context in which a biologically relevant theory can be developed. We argue that future models in ecology should take inspiration from empirical observations and consider different mechanisms of how social preferences could be expressed in collectively moving animal groups.     

On-road and simulated driving: concurrent and discriminant validation

Introduction

A converging pair of studies investigated the validity of a simulator for measuring driving performance/skill.

Study 1

A concurrent validity study compared novice driver performance during an on-road driving test with their performance on a comparable simulated driving test.

Results

Results showed a reasonable degree of concordance in terms of the distribution of driving errors on-road and errors on the simulator. Moreover, there was a significant relationship between the two when driver performance was rank ordered according to errors, further establishing the relative validity of the simulator. However, specific driving errors on the two tasks were not closely related suggesting that absolute validity could not be established and that overall performance is needed to establish the level of skill.

Study 2

A discriminant validity study compared driving performance on the simulator across three groups of drivers who differ in their level of experience - a group of true beginners who had no driving experience, a group of novice drivers who had completed driver education and had a learner's permit, and a group of fully licensed, experienced drivers.

Results

The findings showed significant differences among the groups in the expected direction -- the various measures of driving errors showed that beginners performed worse than novice drivers and that experienced drivers had the fewest errors. Collectively, the results of the concurrent and discriminant validity studies support the use of the simulator as a valid measure of driving performance for research purposes.

Impact on industry

These findings support the use of a driving simulator as a valid measure of driving performance for research purposes. Future research should continue to examine validity between on-road driving performance and performance on a driving simulator and the use of simulated driving tests in the evaluation of driver education/training programs.     

A landscape-scale framework to identify refugia from multiple stressors

From a conservation perspective, quantifying potential refugial capacity has been predominantly focused on climate refugia, which is critical for maintaining the persistence of species and ecosystems. However, protection from other stressors, such as human-induced changes in fire and hydrology, that cause habitat loss, degradation, and fragmentation is also necessary to ensure that conservation efforts focused on climate are not undermined by other threats. Thus, conceptual and methodological advances for quantifying potential refugia from multiple anthropogenic stressors are important to support conservation efforts. We devised a new conceptual approach, the domains of refugia, for assessing refugial capacity that identifies areas where exposure to multiple stressors is low. In our framework, patterns of environmental variability (e.g., increased frequency of warm summers), thresholds of resilience, and extent and intensity of stressors are used to identify areas of potential refugia from a suite of ongoing anthropogenic stressors (e.g., changes in fire regime). To demonstrate its utility, we applied the framework to a Southern California landscape. Sites with high refugial capacity (super-refugia sites) had on average 30% fewer extremely warm summers, 20% fewer fire events, 10% less exposure to altered river channels and riparian areas, and 50% fewer recreational trails than the surrounding landscape. Our results suggest that super-refugia sites (∼8200 km²) for some natural communities are underrepresented in the existing protected area network, a finding that can inform efforts to expand protected areas. Our case study highlights how considering exposure to multiple stressors can inform planning and practice to conserve biodiversity in a changing world.     

Bridging information domains to improve ecological understanding of biological invasions in a marine ecosystem

We devised a practical method for integrating information on 2 marine invasive species using 3 different approaches: standardized ecological monitoring, online-reporting databases, and surveys of anglers and crabbers. Focusing on 2 recently introduced species with different characteristics, the Asian shore crab (Hemigrapsus sanguineus) and Chinese mitten crab (Eriocheir sinensis), in the Hudson-Raritan watershed of New York and New Jersey, we used sensitivity analyses to explore the relative contribution of each information source to knowledge of species abundance and distribution. All 3 information sources contributed something unique to understanding abundance and distribution of the introduced crabs. Online and survey data on Asian shore crabs significantly affected predictions of abundance, whereas monitoring data did not. When survey data were omitted, abundance estimates were unchanged over time, but when they were included, the model predicted an increased abundance in 2012. All 3 data sets for the Asian shore crab significantly affected estimates of species coverage; surveys had the biggest influence, increasing range size by 4097.25 km². For the catadromous Chinese mitten crab, ecological monitoring data collected in freshwater shortly after the original sighting significantly shaped model estimates for abundance and documented the establishment phase of the mitten crab in an area outside the spatial scope of the surveyed resource users. However, the survey data significantly enlarged mitten crab range-size estimates by 6498.01 km². By demonstrating that data integration produced an image of the invasion process that would not have emerged had we used any 1 method individually, model results provide evidence for the advantages of an interdisciplinary approach.     

Conservation Implications of Introduced Game Birds in High-Elevation Hawaiian Shrubland

The Ring-necked Pheasant ( Phasianus colchicus ) and the Chukar ( Alectoris chukar ) are the dominant avifauna in high-elevation shrubland (2070–3000 m) of Haleakala National Park, Maui, Hawaii. We studied the food habits, ecological niche, and effects of these alien game birds on the native biota in this Hawaiian ecosystem. Analyses of crop contents indicated that pheasant and Chukar consumed predominantly fruits of native, woody dicots (39% and 47% respectively) and leaves (29% and 24% respectively) and flower parts (12% and 17% respectively) of alien, herbaceous dicots. Both species generally selected food items according to their relative availability, although other factors influenced choice of certain items. Invertebrates were a minor component of the game-bird diet, suggesting that their impact on native invertebrate populations is minimal. Pheasant and Chukar occupy, at least partially, an ecological niche once held by now-extinct or rare birds, and they appear not to be significant competitors with the endangered Nene. The role of these alien birds in facilitating seed dispersal and germination of native plant species is beneficial in restoring degraded ecosystems.