Integration of eDNA‐Based Biological Monitoring within the U.S. Geological Survey’s National Streamgage Network

This study explores the feasibility and utility of integrating environmental DNA (eDNA) assessments of species occurrences into the United States (U.S.) Geological Survey’s national streamgage network. We used an existing network of five gages in southwest Idaho to explore the type of information that could be gained as well as the associated costs and limitations. Hydrologic technicians were trained in eDNA sampling protocols and they collected samples during routine monthly visits to streamgages over an entire water year (2016). We analyzed the eDNA in the filtered water samples to determine the presence of two fish species: bull trout and rainbow trout. We then modeled the spatiotemporal distribution of each species using discharge and temperature data. To assess the influence of the spatial distribution of the gages on the biological information obtained, we also collected eDNA samples from locations between the gages three times during the water year. We found eDNA monitoring at the five gages provided meaningful information about the distribution of both species, especially when detection probabilities accounted for variations in temperature and discharge. Sampling between the gages provided additional information about bull trout distribution — the rarer of the two species. Our study suggests the integration of eDNA sampling into a streamgage network is feasible and could provide a novel and powerful source of biological information for riverine ecosystems in the U.S.     

Biota Connect Aquatic Habitats throughout Freshwater Ecosystem Mosaics

Freshwater ecosystems are linked at various spatial and temporal scales by movements of biota adapted to life in water. We review the literature on movements of aquatic organisms that connect different types of freshwater habitats, focusing on linkages from streams and wetlands to downstream waters. Here, streams, wetlands, rivers, lakes, ponds, and other freshwater habitats are viewed as dynamic freshwater ecosystem mosaics (FEMs) that collectively provide the resources needed to sustain aquatic life. Based on existing evidence, it is clear that biotic linkages throughout FEMs have important consequences for biological integrity and biodiversity. All aquatic organisms move within and among FEM components, but differ in the mode, frequency, distance, and timing of their movements. These movements allow biota to recolonize habitats, avoid inbreeding, escape stressors, locate mates, and acquire resources. Cumulatively, these individual movements connect populations within and among FEMs and contribute to local and regional diversity, resilience to disturbance, and persistence of aquatic species in the face of environmental change. Thus, the biological connections established by movement of biota among streams, wetlands, and downstream waters are critical to the ecological integrity of these systems. Future research will help advance our understanding of the movements that link FEMs and their cumulative effects on downstream waters.     

Derivation of transfer parameters for use within the ERICA Tool and the default concentration ratios for terrestrial biota

An ability to predict radionuclide activity concentrations in biota is a requirement of any method assessing the exposure of biota to ionising radiation. Within the ERICA Tool fresh weight whole-body activity concentrations in organisms are estimated using concentration ratios (the ratio of the activity concentration in the organism to the activity concentration in an environmental media). This paper describes the methodology used to derive the default terrestrial ecosystem concentration ratio database available within the ERICA Tool and provides details of the provenance of each value for terrestrial reference organisms. As the ERICA Tool considers 13 terrestrial reference organisms and the radioisotopes of 31 elements, a total of 403 concentration ratios were required for terrestrial reference organisms. Of these, 129 could be derived from literature review. The approaches taken for selecting the remaining values are described. These included, for example, assuming values for similar reference organisms and/or biogeochemically similar elements, and various simple modelling approaches.     

Comparison of remotely-sensed surveys vs. in situ plot-based assessments of sea grass condition in Barnegat Bay-Little Egg Harbor,New Jersey USA

With the increasing appreciation that sea grass habitats are in global decline, there is a great need to be able to efficiently and effectively assess and characterize the status and trends of sea grass in our coastal ecosystems. This paper examines the utility of remotely sensed vs. in situ plot-based monitoring using the Barnegat Bay-Little Egg Harbor (BB-LEH), New Jersey, USA estuarine system as a case study. Eelgrass (Zostera marina) is the dominant species, while widgeon grass (Ruppia maritima) is also common in lower salinity regions of the BB-LEH. Aerial imagery collected during the months of July and August 2009 was interpreted and mapped using object based image analysis techniques, similar to techniques used in the 2003 mapping survey of this system. Boat-based in situ monitoring data were collected concurrently with the aerial photography to assist the image interpretation and for an independent accuracy assessment. We compared the remotely-sensed mapping of sea grass cover change (in 2003 vs. 2009) vs. in situ plot-based monitoring conducted from 2004 through 2009. Comparison of the remotely-sensed vs. the in situ plot-change analysis suggests that the two methodologies had broadly similarly results, with the percent area showing declines in sea grass cover greater than those that exhibited increases. In conclusion, the two studies provide corroborating evidence that sea grass has declined in percent cover in the BB-LEH system during the decade of the 2000’s. While remotely-sensed surveys provide synoptic information for a “big picture” view on sea grass distribution, site specific in situ sampling is required to determine other aspects of sea grass status, e.g. above vs. below-ground biomass, blade length, shoot density, epiphytic loading, etc. Either method alone gives an incomplete picture. As demonstrated in this study, to fully characterize the spatial extent, health, and density of sea grass meadows across the entire estuary, combining remote sensing surveys concomitantly with comprehensive in situ assessment provides the most robust approach.     

NYSDEC's DER‐31/Green Remediation Policy Influences Tool Development and Global Program

The New York State Department of Environmental Conservation (NYSDEC) Division of Environmental Remediation (DER) issued a program policy focused on the overall sustainability of hazardous waste site cleanups on August 11, 2010. This DER‐31/Green Remediation program policy (DER‐31) was issued in accordance with 6 New York Codes, Rules and Regulations (NYCRR) Part 375 Environmental Remediation Programs. DER‐31 represents one of the first government‐issued green and sustainable remediation (GSR) policies in the United States. Consistent with other DER policies, DER‐31's provisions are broadly considered to be an expectation/requirement. GSR experts from within AECOM's Remediation Services (RS) Practice Area developed and implemented a GSR program designed to comply with DER‐31 provisions and have now broadly incorporated GSR into our New York remediation projects. Lessons learned from this experience in New York have influenced AECOM's global GSR program and implementation procedures and prompted the development of a new GSR tool (GSRx^TM) for identifying and assessing GSR best management practices (BMPs), which has also been employed globally. © 2013 Wiley Periodicals, Inc.     

Linking Biological Integrity and Watershed Models to Assess the Impacts of Historical Land Use and Climate Changes on Stream Health

Land use change and other human disturbances have significant impacts on physicochemical and biological conditions of stream systems. Meanwhile, linking these disturbances with hydrology and water quality conditions is challenged due to the lack of high-resolution datasets and the selection of modeling techniques that can adequately deal with the complex and nonlinear relationships of natural systems. This study addresses the above concerns by employing a watershed model to obtain stream flow and water quality data and fill a critical gap in data collection. The data were then used to estimate fish index of biological integrity (IBI) within the Saginaw Bay basin in Michigan. Three methods were used in connecting hydrology and water quality variables to fish measures including stepwise linear regression, partial least squares regression, and fuzzy logic. The IBI predictive model developed using fuzzy logic showed the best performance with the R ² = 0.48. The variables that identified as most correlated to IBI were average annual flow, average annual organic phosphorus, average seasonal nitrite, average seasonal nitrate, and stream gradient. Next, the predictions were extended to pre-settlement (mid-1800s) land use and climate conditions. Results showed overall significantly higher IBI scores under the pre-settlement land use scenario for the entire watershed. However, at the fish sampling locations, there was no significant difference in IBI. Results also showed that including historical climate data have strong influences on stream flow and water quality measures that interactively affect stream health; therefore, should be considered in developing baseline ecological conditions.     

Male's return rate, rather than territory fidelity and breeding dispersal, explains geographic variation in song sharing in two populations of an oscine passerine (Oreothlypis celata)

Males of some oscine passerines learn and share songs of neighboring males. This process can lead to the formation of song pattern neighborhoods or microhabitat song dialects. The degree to which song sharing occurs between populations and the spatial scale over which neighboring males share songs, however, can vary widely, and interpopulation comparisons have suggested that song sharing is more common in residents than in migrants. Here, we examine two populations of the orange-crowned warbler (Oreothlypis celata) to quantify patterns of song sharing at the northern (long-distance migrant) and southern (short-distance migrant) edges of the breeding distribution and to test if return rate, territory fidelity, and breeding dispersal explain the patterns found in the two populations. The southern population (O. celata sordida breeding on Santa Catalina Island, California; 33°N) had a higher annual return rate to their territories and exhibited higher song sharing in neighborhoods than their counterparts (O. celata celata breeding in Fairbanks, Alaska; 64°N). Year-to-year patterns of territory fidelity and breeding dispersal distances were similar between populations. Our results suggest that if migratory distance generally covaries with the proportion of returning males, this could explain different levels of song sharing between the short- and long-distance migrants.     

Evaluating the Effects of Three Forms of Marine Reserve on Northern Abalone Populations in British Columbia, Canada

Abstract: Marine reserves have been suggested as tools for assisting the management of fisheries by protecting vulnerable marine species from overexploitation. Although there is a theoretical basis for believing that marine reserves may serve as management tools, there are few marine reserves in the world in which to test their effectiveness. My research evaluated three forms of marine reserve on the south coast of Vancouver Island, British Columbia, Canada. I used northern abalone ( Haliotis kamtschatkana ), a severely depleted shellfish in this region, as an indicator of the effectiveness of the reserves. Abalone populations in eight sites receiving different degrees of spatial protection were counted and measured in situ during the spring of 1996 and 1997. In all sites with enforced harvest closures, populations of abalone were greater, and one site with nearly 40 years of protection had on average much larger (older) abalone. Reproductive output, as a function of abundance and size, was also greater in the enforced reserve areas. Larval dispersal from reserves, and hence the benefit to exploited areas, was not formally surveyed. Nevertheless, the results of my study, combined with knowledge of present abalone populations, life history, and regional hydrodynamics, suggest that establishment of reserves is justified in the absence of perfect knowledge of larval dispersal.