Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats

Conservation and management of marine biodiversity depends on biomonitoring of marine habitats, but current approaches are resource-intensive and require different approaches for different organisms. Environmental DNA (eDNA) extracted from water samples is an efficient and versatile approach to detecting aquatic animals. In the ocean, eDNA composition reflects local fauna at fine spatial scales, but little is known about the effectiveness of eDNA-based monitoring of marine communities at larger scales. We investigated the potential of eDNA to characterize and distinguish marine communities at large spatial scales by comparing vertebrate species composition among marine habitats in Qatar, the Arabian Gulf (also known as the Persian Gulf), based on eDNA metabarcoding of seawater samples. We conducted species accumulation analyses to estimate how much of the vertebrate diversity we detected. We obtained eDNA sequences from a diverse assemblage of marine vertebrates, spanning 191 taxa in 73 families. These included rare and endangered species and covered 36% of the bony fish genera previously recorded in the Gulf. Sites of similar habitat type were also similar in eDNA composition. The species accumulation analyses showed that the number of sample replicates was insufficient for some sampling sites but suggested that a few hundred eDNA samples could potentially capture >90% of the marine vertebrate diversity in the study area. Our results confirm that seawater samples contain habitat-characteristic molecular signatures and that eDNA monitoring can efficiently cover vertebrate diversity at scales relevant to national and regional conservation and management.     

Emissions into the Atmosphere Due to the Ceramic Salt Glazing Process

The techniques of Principal Component Analysis (PCA) and subsequent regression analysis were used in an attempt to describe local and upwind chemical and physical factors which affect the variability of SO₄ ^–2 concentrations observed in a rural area of the northeastern U.S. The data used in the analyses included upwind and local O₃ concentrations, temperature, relative humidity and other climatological information, SO₂, and meteorological information associated with backward trajectories. The investigation identified five principal components, three major (eigenvalues >1) and two minor (eigenvalues < one), which accounted for 52% (r = 0.72) of the variability in the SO₄ ^–2 regression model. These components can be described as representing local and upwind photochemistry, droplet growth, SO₂ emissions, and air mass characteristics. The study also indicated that in future studies it will be necessary to a priori select air pollution and meteorological variables for measurement to potentially increase the sensitivity of this type of receptor model.     

A Comparison of Mass,Lead, Sulfate,and Nitrate Concentrations in a Field Study Using Dichotomous,Size-Selective,and Standard Hi-Vol Samplers

Air monitoring In the San Francisco Bay Area was carried out to measure outdoor community air concentrations of poly cyclic aromatic hydrocarbons (PAH) and mutagenlc activity (mutagenlclty) In participate organic matter (POM). Monitoring began In 1979 and Is currently conducted at six stations. PAH and mutagenlclty tests were performed on organic extracts prepared from high volume (hl-vol) filters composited every four months, by meteorological season. PAH were determined by high pressure liquid chromatography (HPLC) with fluorescence and ultraviolet detection. Mutagenlclty was measured In the Ames Salmonella bloas-say using strain TA98 with and without metabolic activation. The nine-year mean concentration of benzo(a)pyrene (BaP) was 0.4 ng/m³. The mutagenlcfty of this amount of BaP accounted for only about 0.2% of the observed mutagenicity In POM and other measured PAH accounted for even less. Concentrations of PAH and mutagenlclty were three to nine times higher during the winter than during other seasons. Year-to-year wintertime trends In several PAH were also seen. Early In the 1980s, winter concentrations of BaP and benzo (g,h,i)perylene Increased. However since the mld-1980’s, their concentrations have fallen. The decrease In PAH concentrations may be the result of an Increasing proportion of vehicles with relatively low organic emissions. In contrast to PAH, mutagenlcfty did not show significant year-to-year time trends.     

Evaluation of the Use of Solar Irradiation for the Decontamination of Soils Containing Wood Treating Wastes

Laboratory evaluation of the efficacy of soil phase photodegradation of recalcitrant hazardous organic components of wood treating wastes is described. The photodecomposition of anthracene, biphenyl, 9H-carbazole, m-cresol, dibenzofuran, fluorene, pentachlorophenol, phenanthrene, pyrene and quinoline under UV and visible light was monitored over a 50-day reaction period in three test soils. Methylene blue, riboflavin, hydrogen peroxide, peat moss and diethylamine soil amendments were evaluated as to their effect on the enhancement of compound photoreaction rates in the test soil systems. Dark control samples monitored over the entire study period were utilized to quantify non-photo mediated reaction losses. Compounds losses in both the dark control and irradiated samples were found to follow first order kinetics, allowing the calculation of first order photodegradation reaction rate constants for each test soil/compound combination. Degradation due to photochemical activity was observed for all test compounds, with compound photolytic half-lives ranging from 7 to approximately 180 days. None of the soil amendments were found to improve soil phase photodegradation, although photosensitization by anthracene was shown to significantly enhance the rate of photodegradation of the other test compounds. Soil type, and its characteristic of internal reflectance, proved to be the most significant factor affecting compound degradation rates suggesting the necessity for site specific assessments of soil phase photodegradation potential.     

Modeling and Spatially Distributing Forest Net Primary Production at the Regional Scale

Abstract

Forest, agricultural, rangeland, wetland, and urban landscapes have different rates of carbon sequestration and total carbon sequestration potential under alternative management options. Changes in the proportion and spatial distribution of land use could enhance or degrade that area’s ability to sequester carbon in terrestrial ecosystems. As the ecosystems within a landscape change due to natural or anthropogenic processes, they may go from being a carbon sink to a carbon source or vice versa. Satellite image analysis has been tested for timely and accurate measurement of spatially explicit land use change and is well suited for use in inventory and monitoring of terrestrial carbon. The coupling of Landsat Thematic Mapper (TM) data with a physiologically based forest productivity model (PnET-II) and historic climatic data provides an opportunity to enhance field plot-based forest inventory and monitoring methodologies. We use periodic forest inventory data from the U.S. Department of Agriculture (USDA) Forest Service’s Forest Inventory and Analysis (FIA) Program to obtain estimates of forest area and type and to generate estimates of carbon storage for evergreen, deciduous, and mixed-forest classes. The area information is used in an accuracy assessment of remotely sensed forest cover at the regional scale. The map display of modeled net primary production (NPP) shows a range of forest carbon storage potentials and their spatial relationship to other landscape features across the southern United States. This methodology addresses the potential for measuring and projecting forest carbon sequestration in the terrestrial biosphere of the southern United States.     

Prediction of Streamflow Regime and Annual Runoff for Ungauged Basins Using a Distributed Monthly Water Balance Model1

Moore, R.D. (Dan), J.W. Trubilowicz, and J.M. Buttle, 2011. Prediction of Streamflow Regime and Annual Runoff for Ungauged Basins Using a Distributed Monthly Water Balance Model. Journal of the American Water Resources Association (JAWRA) 48(1): 32‐42. DOI: 10.1111/j.1752‐1688.2011.00595.x Abstract: Prediction of streamflow in ungauged basins is a global challenge, but is particularly an issue in physiographically complex regions like British Columbia (BC), Canada. The objective of this study was to assess the accuracy of a simple water balance model that can be run using existing spatial datasets. The model was developed by modifying an existing monthly water balance model to account for interception loss from forest canopy, glacier melt, and evaporation from lakes. The model was run using monthly climate normals from the ClimateBC application, which have a horizontal resolution of 400 m. Each ClimateBC grid cell was classified as forest, open land, glacier or water surface based on provincial scale digital maps of biogeoclimatic zones, glaciers, and water. The output was monthly mean runoff from each grid cell. These values were integrated within the catchment boundaries for streams gauged by the Water Survey of Canada. Annual runoff was predicted with modest accuracy: after updating the predicted runoff by interpolating errors from neighboring gauged streams, the mean absolute error was 25.4% of the gauged value, and 52% of the streams had errors less than 20%. However, the model appears to be quite robust in distinguishing between pluvial, hybrid, and melt‐dominated hydroclimatic regimes, and therefore has promise as a tool for catchment classification.     

Agricultural drainage ditches mitigate phosphorus loads as a function of hydrological variability

Phosphorus (P) loading from nonpoint sources, such as agricultural landscapes, contributes to downstream aquatic ecosystem degradation. Specifically, within the Mississippi watershed, enriched runoff contributions have far-reaching consequences for coastal water eutrophication and Gulf of Mexico hypoxia. Through storm events, the P mitigation capacity of agricultural drainage ditches under no-till cotton was determined for natural and variable rainfall conditions in north Mississippi. Over 2 yr, two experimental ditches were sampled monthly for total inorganic P concentrations in baseflow and on an event-driven basis for stormflows. Phosphorus concentrations, Manning's equations with a range of roughness coefficients for changes in vegetative densities within the ditches, and discharge volumes from Natural Resources Conservation Service dimensionless hydrographs combined to determine ranges in maximum and outflow storm P loads from the farms. Baseflow regressions and percentage reductions with P concentrations illustrated that the ditches alternated between being a sink and source for dissolved inorganic P and particulate P concentrations throughout the year. Storm event loads resulted in 5.5% of the annual applied fertilizer to be transported into the drainage ditches. The ditches annually reduced 43.92 +/- 3.12% of the maximum inorganic effluent P load before receiving waters. Agricultural drainage ditches exhibited a fair potential for P mitigation and thus warrant future work on controlled drainage to improve mitigation capacity.     

Importance of public information and perception for managing recreational activities in the Peel-Harvey estuary, Western Australia

Surveys of water recreational activities were conducted in the Peel-Harvey estuary. Channels used by recreationists to gain information about water quality, the perception of water quality and resulting behaviour were investigated. This study showed that personal perception, local knowledge and history, absence of warnings and residency were major factors contributing to risk perception and behaviour in this recreational community. Management strategies should take this information into account to achieve maximal outcomes.     

The impact of an industrial complex on freshly deposited sediments, Chener Rahdar river case study, Shiraz, Iran

Concentrations of elements (As, Co, Cu, Ni, Mo, Pb, V, and Zn) are studied in the sediments of two adjacent stretches of Chenar Rahdar river. The first stretch (S1) is influenced by urban and arable land wastewater, and the second (S2) is mainly loaded with industrial effluents. The average abundance order of heavy metals content in S1 sediments is Ni > V > Zn > Cu > Co > As > Pb > Mo and in S2 sediments is Ni > Zn > V > Cu > Mo > Pb > Co > As. The maximum average concentration for these heavy metals (except for As) occurs in the S2 sediments. The contamination factor (CF) base of background in S1 for eight analyzed elements is moderate. The CF for Cu, Zn, and Pb in S2 sediments is considerable. The highest CF in S1 and S2 sediments is observed for Mo (CF = 10.95 and 12.41) and indicates very high contamination. The application of modified degree of contamination values (mC_d) indicates low and high degree of contamination (1.89–4.15) in S1 and S2, respectively. Calculated enrichment factors (EF) reveal enrichment of Mo and As in S1 and Zn, Cu, Mo, and Pb in S2 compared to the average abundances of background level. The maximum EF for Mo is 7.61 (significant enrichment), while Pb, Zn, and Cu with maximum EF between 2 and 5 indicate moderate contamination. Principal component analysis (PCA) shows distinctly different elemental associations in S1 and S2 sediments. The strong association of Zn, Co, Ni, Sc, Cu, Al and Fe in S1 suggests a similar source. The results of PCA for Zn, Pb, Mo and Cu in S2 (componente2) indicate that these metals are influenced by anthropogenic activity. Also, high loading heavy metals with OC (0.97) indicate that organic carbon plays a significant role in the distribution and sorption of these heavy metals in the sediments. Factor analysis indicates that As and Mo behave differently in sediment samples.     

Impact of untreated wastewater irrigation on soils and crops in Shiraz suburban area, SW Iran

In this study an assessment is made of the negative impacts of wastewater irrigation on soils and crops sampled along the Khoshk River channel in suburban area of Shiraz City, SW Iran. For this purpose, samples of soil profiles (0–60 cm in depth) and crops were collected from two wastewater irrigated sites and a tube well-irrigated (control) site. Total concentrations of the five heavy metals (Ni, Pb, Cd, Zn and Cr) and their phytoavailable contents were determined. The Pollution Load Indexes (PLIs) and Contamination Factors (CFs) for soils and Hazard quotients (ΣHQ) for some vegetables were also calculated. The results showed the use of untreated wastewater has caused the following changes as compared to control site: (1) a 20–30% increase in organic matter content of soil; (2) increase in pH by 2–3 units; (3) significant concentration increase in Ex-Ca especially in top layers of soil resulting in high CEC; (4) build up of heavy metals (notably Pb and Ni) in topsoil above Maximum Permissible Limits (MPLs) indicating a moderate contamination (PLI > 1, CF > 2.5); (5) contamination of some vegetables (spinach and lettuce) with Cd due to its high phytoavailability in topsoil causing a HQ > 1; (6) excessive accumulation of Ni and Pb in wheat due to continual addition of heavy metals through long-term wastewater application. The study concludes that strict protection measures, stringent guidelines and an integrated system for the treatment and recycling of wastewater are needed to minimize the negative impacts of wastewater irrigation in the study area.