Prioritizing sites for conservation based on similarity to historical baselines and feasibility of protection

The concept of shifting baselines in conservation science implies advocacy for the use of historical knowledge to inform these baselines but does not address the feasibility of restoring sites to those baselines. In many regions, conservation feasibility varies among sites due to differences in resource availability, statutory power, and land‐owner participation. We used zooarchaeological records to identify a historical baseline of the freshwater mussel community's composition before Euro‐American influence at a river‐reach scale (i.e., a kilometer stretch of river that is abiotically similar) in the Leon River of central Texas (U.S.A.). We evaluated how the community reference position and the feasibility of conservation might enable identification of sites where conservation actions would preserve historically representative communities and be likely to succeed. We devised a conceptual model that incorporated community information and landscape factors to link the best conservation areas to potential cost and conservation benefits. Using fuzzy ordination, we identified modern mussel beds that were most like the historical baseline. We then quantified housing density and land use near each river reach identified to estimate feasibility of habitat restoration. Using our conceptual framework, we identified reaches of high conservation value (i.e., contain the best mussel beds) and where restoration actions would be most likely to succeed. Reaches above Lake Belton were most similar in species composition and relative abundance to zooarchaeological sites. A subset of these mussel beds occurred in locations where conservation actions appeared most feasible. Our results show how to use zooarchaeological data (biodiversity data often readily available) and estimates of conservation feasibility to inform conservation priorities at a local spatial scale.     

Insights on plant interaction between dominating species from patterns of plant association: expected covariance of pin-point cover measurements of two species

It has been suggested that in order to infer ecological processes from observed patterns of species abundance we need to investigate the covariance in species abundance. Consequently, an expression for the expected covariance of pin-point cover measurements of two species is developed. By comparing the observed covariance with the expected covariance we get a new type of information on the spatial arrangement of two species. Here the discrepancy between the observed and expected covariance may be thought of as a measure of the spatial configuration of the two species that may indicate underling ecological processes. The method is applied in a case study of Calluna vulgaris and Deschampsia flexuosa on dry heathland sites. The observed covariance of Calluna and Deschampsia at the level of the sites was positively and significantly correlated with the expected covariance. Negative covariance was observed on sites where both Calluna and Deschampsia had a high cover, which is in agreement with the notion that both species form distinct patches. Oppositely, at sites where both species have a low cover, we found that both the expected and observed covariance were positive. The proposed measure for the expected covariance of two species does capture information on the combined spatial configuration of the two species if the species are common. We show how this may be relevant for understanding the underlying ecological processes leading to the observed covariance.     

Lock-exchange gravity currents over rough bottoms

In nature, density driven currents often flow over or within a bottom roughness: a sea breeze encountering tall buildings, a shallow flow encountering aquatic vegetation, or a dense oceanic current flowing over a rough bottom. Laboratory experiments investigating the mechanisms by which bottom roughness enhances or inhibits entrainment and dilution in a lock-exchange dense gravity current have been conducted. The bottom roughness has been idealized by an array of vertical, rigid cylinders. Both spacing (sparse vs. dense configuration) and height of the roughness elements compared with the height of the current have been varied. Two-dimensional density fields have been obtained. Experimental results suggest that enhancement of the entrainment/dilution of the current can occur due to two different mechanisms. For a sparse configuration, the dense current propagates between the cylinders and the entrainment is enhanced by the vortices generated in the wake of the cylindrical obstacles. For a dense configuration, the dense current rides on top of the cylinders and the dilution is enhanced by the onset of convective instability between the dense current above the cylinders and the ambient lighter water between the cylinders. For low values of the ratio of the cylinder to lock height \(\lambda \) the dense current behavior approaches that of a current over a smooth bottom, while the largest deviations from the smooth bottom case are observed for large values of \(\lambda \).     

Part I : <Emphasis Type="Italic">a priori</Emphasis> study of erosion and deposition with large eddy simulation of turbulent flow over multiple 2D sandy Gaussian hills

The micro-scale prediction of sand trapping or take-off over hilly terrains is a crucial issue in semi-arid regions for soil depletion. In this context, large eddy simulations around one or several hills are performed in order to provide statistical parameters to characterize the flow at micro-scales and provide data for mesoscale modelling. We focus on the determination of recirculation zones since they play an important role in solid particle erosion or entrapment. A new wall modeling adapted from Huang et al. (J Turbul 17:1–24, 2016) for rough boundary layers is found to improve the prediction of the recirculation zone length downstream of an isolated hill and is used for all the numerical cases presented here. A geometrical parameterization of the recirculation zones is proposed. When the recirculation region is assumed to have an ellipsoidal shape, the total surface of the recirculation can be obtained from this new parameterization and easily extrapolated to more general dune configurations. Numerical results are compared with experiments performed in our laboratory (Simoëns et al. in Procedia IUTAM 17:110–118, 2015) and good agreement is achieved. We explore general aerodynamic cases deduced from the urban canopy scheme of Oke (Energy Build 11:103–113, 1988). In this scheme the momentum and mass exchange between the upper layer and the space between hills is sorted according to the streamwise hill spacing within three basic cases of skimming, wake or isolated flow. The study of the recirculation zones, the mean velocity and Reynolds stress profiles around an isolated or two consecutive hills with different distances shows that the double hill configuration with 3H separation behaves as much as a whole to the upcoming flow. The vortex formed between the crests does not strongly affect the overall evolution of the outer flow. By an a priori prediction of the preferential zones of erosion and accumulation of fictive particles, it is shown that isolated dunes present more deposition and less erosion than two-hill configurations. The results presented in this study will be discussed in the presence of Lagrangian transport of sand particles above 2D Gaussian hills in future work.     

Shoaling internal waves may reduce gravity current transport

Gravity currents descending along slopes have typically been studied in quiescent environments, despite the fact that in many geophysical settings there is significant externally driven motion. Here we investigate how the head of a gravity current is influenced by interfacial internal waves at the pycnocline of a two-layer ambient water column. Our experimental measurements show that larger amplitude internal waves, interacting with the gravity current, reduce both the mass transport by the gravity current and its thickness. These results suggest that the ambient internal wave field should be considered when estimating transport by gravity currents in geophysical settings with strong internal waves, such as lakes and the coastal ocean.     

A high resolution measurement of the morning ABL transition using distributed temperature sensing and an unmanned aircraft system

We used an unmanned aircraft system (UAS) to lift and suspend distributed temperature sensing (DTS) technologies to observe the onset of an early morning transition from stable to unstably stratified atmospheric conditions. DTS employs a fiber optic cable interrogated by laser light, and uses the temperature dependent Raman scattering phenomenon and the speed of light to obtain a discrete spatial measurement of the temperature along the cable. The UAS/DTS combination yielded observations of temperature in the lower atmosphere with high resolution (1 s and 0.1 m) and extent (85 m) that revealed the detailed processes that occurred over a single morning transition. The experimental site was selected on the basis of previous experiments and long term data records; which indicate that diurnal boundary layer development and wind sectors are predictable and consistent. The data showed a complex interplay of motions that occur during the morning transition that resulted in propagation and growth of unstable wave modes. We observed a rapid cooling of the air aloft (layer above the strong vertical temperature gradient) layer directly after sunrise due to vertical mixing followed by an erosion of the strong gradient at the stable layer top. Midway through the transition, unstable wave modes were observed that are consistent with Kelvin–Helmholtz motions. These motions became amplified through the later stages of the transition.     

Interaction of North Brazil Current rings with the Lesser Antilles Arc and Barbados Island: laboratory experiments and observations

The interaction of North Brazil Current (NBC) rings with the Lesser Antilles Arc (LAA) and the Barbados Island (BI) is addressed by experimental modeling and observations. Our results compare well with previous experimental results and numerical simulations. Several sizes, intensities and two different vorticity profiles (non-isolated and initially isolated vortices) were tested. Three regimes were found namely: (1) the vortex surrounds the BI and its translational motion (TM) stops North of BI; (2) the vortex passes through the corridor between the LAA and the BI by reducing its size; and (3) The vortex stopped at the entrance to the corridor South of the BI. Isolated vortices were prone to stopped North of the BI. Apparently the intensity in the outer vorticity ring has an influence on the fate of the NBC ring. Non-isolated vortices can also stop its TM North of the BI because when in \(\beta\) plane they develop an outer ring similar to the isolated vortices. From these results we conclude that intense and big NBC rings are likely to stop its TM North of the BI. Medium and moderate vortices stops its TM South of the BI and they reduce their size until they are able to pass through the corridor between the LAA and the BI. Mild vortices of all sizes stop South of the corridor, close to the BI and the LAA. Drifter trajectories and Sea Surface Height altimetry confirm the results.     

Human lung injury following exposure to humic substances and humic-like substances

Among the myriad particles the human respiratory tract is exposed to, a significant number are distinctive in that they include humic substances (HS) and humic-like substances (HULIS) as organic components. HS are heterogeneous, amorphous, organic materials which are ubiquitous occurring in all terrestrial and aqueous environments. HULIS are a complex class of organic, macromolecular compounds initially extracted from atmospheric aerosol particles which share some features with HS including an aromatic, polyacidic nature. As a result of having a variety of oxygen-containing functional groups, both HS and HULIS complex metal cations, especially iron. Following particle uptake by cells resident in the lung, host iron will be sequestered by HS- and HULIS-containing particles initiating pathways of inflammation and subsequent fibrosis. It is proposed that (1) human exposures to HS and HULIS of respirable size (<10 µm diameter) are associated with inflammatory and fibrotic lung disease and (2) following retention of particles which include HS and HULIS, the mechanism of cell and tissue injury involves complexation of host iron. Human inflammatory and fibrotic lung injuries following HS and HULIS exposures may include coal workers’ pneumoconiosis, sarcoidosis, and idiopathic pulmonary fibrosis as well as diseases associated with cigarette smoking and exposures to emission and ambient air pollution particles.     

Development of the “rare-earth” hypothesis to explain the reasons of geophagy in Teletskoye Lake are kudurs (Gorny Altai,Russia)

The mineral and chemical composition of the liquid and lithogenous substances, consumed by the wild ungulate animals, at the kudurs of the Teletskoye Lake, Gorny Altai, Russia, was studied. It was investigated that all examined kudurits are argillous-aleurolitic and get in the interval from 1 to 100 μm with the predominance of the fraction 10 μm. By the mineral composition, the lithogenous kudurits present the quartz-feldspathic-hydromicaceous-chloritic mineral formations with the large content of the quartz particles (20–43%) and sodium-containing plagioclases (albite, 15–32 wt%). The lithogenous kudurits are the products of the reconstitution of the metamorphic cleaving stones as a result of the glacier abrasive effect, subsequent its aqueous deposits and then eolation in the subaerial conditions. The fontinal waters consumed at the kudurs are subsaline chloride-hydrocarbonate-sodium and sulphated-hydrocarbonate-calcium types. It essentially differs by the increased content of rare-earth elements in reference to the lake water. The acid (HCl, pH-1) extracts from the kudurits more actively extract calcium (10–35% of the gross contents; sodium extracts at the level of 1–3%). The most fluent in the microelements composition are Cu, Be, Sr, Co, Cd, Pb, Sc, Y and rare-earth elements. The transit of all these elements into the dissoluted form fluctuates about 10% from the gross contents. The reason of geophagy is related to tendency of herbivores to absorb mineralized subsoils enriched by the biologically accessible forms of rare-earth elements, arisen as a result of vital activity of specific microflora.     

Bayesian nonparametric inference for the overlap of daily animal activity patterns

The study of the interaction among species is an active area of research in Ecology. In particular, it is of interest to evaluate the overlap of their ecological niches. Temporal activity is one of the niche’s axes most commonly used to explore ecological segregation among animal species, and many contributions focus on the overlap of this variable. Once the information of the temporal activity is obtained in the wild, the data is treated as a random sample. There exist different methods to estimate the overlap. Specifically, in the case of two species, one possibility is to estimate the density of the temporal activity of each species and then evaluate the overlap between these density functions. This leads naturally to the analysis of circular data. Most of the procedures currently in use impose some rather restrictive assumptions on the probabilistic models used to describe the phenomena, and only provide approximate measures of the uncertainty involved in the process. In this article, we propose a Bayesian nonparametric approach which incorporates a well-defined noninformative prior. We take advantage of the data structure to define such a prior in terms of the predictive distribution. To the best of our knowledge, this is a novel approach. Our procedure is compared with a well-known method using simulated data, and applied to the analysis of real camera-trap data concerning two mammalian species from the El Triunfo biosphere reserve (Chiapas, Mexico).