Genomic erosion in a demographically recovered bird species during conservation rescue

The pink pigeon (Nesoenas mayeri) is an endemic species of Mauritius that has made a remarkable recovery after a severe population bottleneck in the 1970s to early 1990s. Prior to this bottleneck, an ex situ population was established from which captive-bred individuals were released into free-living subpopulations to increase population size and genetic variation. This conservation rescue led to rapid population recovery to 400–480 individuals, and the species was twice downlisted on the International Union for the Conservation of Nature (IUCN) Red List. We analyzed the impacts of the bottleneck and genetic rescue on neutral genetic variation during and after population recovery (1993–2008) with restriction site-associated sequencing, microsatellite analyses, and quantitative genetic analysis of studbook data of 1112 birds from zoos in Europe and the United States. We used computer simulations to study the predicted changes in genetic variation and population viability from the past into the future. Genetic variation declined rapidly, despite the population rebound, and the effective population size was approximately an order of magnitude smaller than census size. The species carried a high genetic load of circa 15 lethal equivalents for longevity. Our computer simulations predicted continued inbreeding will likely result in increased expression of deleterious mutations (i.e., a high realized load) and severe inbreeding depression. Without continued conservation actions, it is likely that the pink pigeon will go extinct in the wild within 100 years. Conservation rescue of the pink pigeon has been instrumental in the recovery of the free-living population. However, further genetic rescue with captive-bred birds from zoos is required to recover lost variation, reduce expression of harmful deleterious variation, and prevent extinction. The use of genomics and modeling data can inform IUCN assessments of the viability and extinction risk of species, and it helps in assessments of the conservation dependency of populations.     

Fiddler crab burrowing affects growth and production of the white mangrove (<Emphasis Type="Italic">Laguncularia racemosa</Emphasis>) in a restored Florida coastal marsh

Positive plant–animal interactions are important in community ecology, but relatively little attention has been paid to their effect on the production of mangroves, dominant halophytic trees in tropical coastal marshes. Here, the role of fiddler crab (Uca spp.) burrowing on the growth and production of the white mangrove, Laguncularia racemosa (<2 years old), was examined in a restored marsh in Tampa Bay, Florida (27°41.65 N, 82°30.34 W) with manipulative experiments from June 2006 to May 2007. Fiddler crab burrowing significantly increased mangrove height by 27%, trunk diameter by 25%, and leaf production by 15%, compared to mangroves in crab exclusion enclosures. Additionally, the exclusion of fiddler crabs significantly increased interstitial water salinity from 32.4 to 44.2, and decreased the oxidation–reduction potential of the low organic sediments, but did not affect soil pH or sulfide concentration. Mangrove height, trunk diameter, and leaf production along a transect that varied in crab burrow density were positively associated with the number of crab burrows. Further, the density of sympatric Spartina alterniflora shoots was positively correlated with crab burrow density along the transect. As in temperate marshes, fiddler crabs can have significant ecological effects on mangrove communities, serving as ecological engineers by modulating the amount of resources available to marsh plants, and by altering the physical, chemical, and biological state of these soft sediment communities. In restored coastal systems that typically have very poor sediment quality, techniques such as soil amendment could be used to facilitate a more natural interaction between crabs and mangroves in ecosystem development.     

Estimates of species- and ecosystem-level respiration of woody stems along an elevational gradient in the Luquillo Mountains, Puerto Rico

We measured CO₂ efflux from stems of seven subtropical tree species situated along an elevational gradient in the Luquillo Mountains, Puerto Rico and scaled these measurements up to the landscape level based on modeled and empirical relations. The most important determinants of ecosystem stem respiration were species composition and stem temperature. At a species scale, measured CO₂ efflux per unit bole surface area at a given temperature was highest in the early successional species Cecropia schreberiana and lowest in species that inhabit high elevations such as Micropholis garciniifolia and Tabebuia rigida. Carbon dioxide efflux rates followed a diel pattern that lagged approximately 6 h behind changes in sapwood temperatures. At an ecosystem scale, our simulation model indicates a decreasing trend of stem respiration rates with increasing elevation due to shifts in species composition, lower temperatures and reductions in branch surface area. The highest estimated stem respiration rates were present in the lowland tabonuco forest type and the lowest rates were present in the elfin forest type (mean 7.4 and 2.1 Mg C ha⁻¹ yr⁻¹, respectively). There was slight temperature-induced seasonal variation in simulated stem respiration rates at low elevations, with a maximum difference of 19% between the months of February and July. Our results coincide well with those of Odum and Jordan [Odum, H.T., Jordan, C.F., 1970. Metabolism and evapotranspiration of the lower forest in a giant plastic cylinder. In: Odum, H.T., Pigeon, R.F. (Eds.), A Tropical Rain Forest: A Study of Irradiation and Ecology at El Verde, Puerto Rico. U.S. Atomic Energy Commission, Oak Ridge, TN, pp. I165–I189] for the tabonuco forest type and extend their work by presenting estimates and spatial patterns of woody tissue respiration for the entire mountain rather than for a single forested plot.     

Method to Partition Between Attached and Unattached E. coli in Runoff From Agricultural Lands1

Abstract: Remediation of waters impaired by bacterial indicators is usually dictated by total maximum daily load plans, which are heavily dependent on fate and transport modeling of bacterial indicators. Nonpoint source pollution models are most frequently used to assess bacterial transport to surface waters and most models typically simulate bacterial transport as a dissolved pollutant. Previous studies have found that cells preferentially attach to sediments; however, a variety of techniques have been used to assess attachment including filtration, fractional filtration, and centrifugation. In addition, a variety of chemical and physical dispersion techniques are used to release attached and bioflocculated cells from particulates. Here we developed and validated an easy‐to‐replicate laboratory procedure for separation of unattached from attached E. coli which will also identify particle sizes to which E. coli preferentially attach. Physical and chemical dispersion techniques were evaluated and a combined hand shaker treatment for 10 min followed by dilutions in 1,000 mg/l of Tween 85 significantly increased total E. coli concentrations by 31% when compared with a control. In order to separate unattached from attached fractions, two commonly used techniques, fractional filtration, and centrifugation were combined. The filtration and centrifugation treatments did not reduce E. coli concentrations when compared with a control (p > 0.05), indicating that damage was not inflicted upon the E. coli cells during the separation procedure.     

Examining the joint toxicity of chlorpyrifos and atrazine in the aquatic species: Lepomis macrochirus, Pimephales promelas and Chironomus tentans

The joint toxicity of chlorpyrifos and atrazine was compared to that of chlorpyrifos alone to discern any greater than additive response using both acute toxicity testing and whole-body residue analysis. In addition, acetylcholinesterase (AChE) inhibition and biotransformation were investigated to evaluate the toxic mode of action of chlorpyrifos in the presence of atrazine. The joint toxicity of atrazine and chlorpyrifos exhibited no significant difference in Lepomis macrochirus compared to chlorpyrifos alone; while studies performed with Pimephales promelas and Chironomus tentans, did show significant differences. AChE activity and biotransformation showed no significant differences between the joint toxicity of atrazine and chlorpyrifos and that of chlorpyrifos alone. From the data collected, the combination of atrazine and chlorpyrifos pose little additional risk than that of chlorpyrifos alone to the tested fish species.     

Local Gradients of Cowbird Abundance and Parasitism Relative to Livestock Grazing in a Western Landscape

Abstract: We studied local patterns of Brown-headed Cowbird ( Molothrus ater ) abundance, parasitism rates, and nest success of a common host, the Plumbeous Vireo ( Vireo plumbeus ), in relation to the distribution of livestock grazing in an undeveloped region of northeastern New Mexico, 1992–1997. We predicted that both cowbird abundance and parasitism rates of vireo nests would decrease with increasing distance from active livestock grazing, and that the nesting success of vireos would increase. We measured cowbird abundance and host density and located and monitored vireo nests in pinyon-juniper and mixed-conifer habitats that ranged from actively grazed to isolated from livestock grazing by up to 12 km. Cowbird abundance declined with distance from active livestock grazing and was not related to host density or habitat type. Brood parasitism levels of vireo nests ( n = 182) decreased from> 80% in actively grazed habitats to 33% in habitats that were 8–12 km from active grazing but did not vary by habitat type or distance to forest edge. Vireo nesting success was higher in mixed-conifer habitat than in pinyon-juniper but was unrelated to distance from active livestock grazing. Nest losses due to parasitism declined with distance from active livestock grazing. Our results suggest that cowbird abundance and parasitism rates of hosts may be distributed as a declining gradient based on distance from cowbird feeding sites and that isolation from feeding sites can reduce the effects of parasitism on host populations. These findings provide support for management techniques that propose to reduce local cowbird numbers and parasitism levels by manipulating the distribution of cowbird feeding sites. The presence of parasitized nests> 8 km from active livestock grazing suggests that, in some regions, management efforts may need to occur at larger scales than previously realized.     

Effect of gaseous chlorine dioxide on indoor microbial contaminants

Traditional and modern techniques for bioaerosol enumeration were used to evaluate the relative efficiency of gaseous chlorine dioxide (ClO2) in reducing the indoor microbial contamination under field and laboratory conditions. The field study was performed in a highly microbially contaminated house, which had had an undetected roof leak for an extended period of time and exhibited large areas of visible microbial growth. Air concentrations of culturable fungi and bacteria, total fungi determined by microscopic count and polymerase chain reaction (PCR) assays, endotoxin, and (1 --> 3)-beta-D-glucan were determined before and after the house was tented and treated with ClO2. The laboratory study was designed to evaluate the efficiency of ClO2 treatment against known concentrations of spores of Aspergillus versicolor and Stachybotrys chartarum on filter paper (surrogate for surface treatment). These species are commonly found in damp indoor environments and were detected in the field study. Upon analysis of the environmental data from the treated house, it was found that the culturable bacteria and fungi as well as total count of fungi (as determined by microscopic count and PCR) were decreased at least 85% after the ClO2 application. However, microscopic analyses of tape samples collected from surfaces after treatment showed that the fungal structures were still present on surfaces. There was no statistically significant change in airborne endotoxin and (1 --> 3)-beta-D-glucan concentration in the field study. The laboratory study supported these results and showed a nonsignificant increase in the concentration of (1 --> 3)-beta-D-glucan after ClO2 treatment.     

Impacts of atmospheric pollution on the plant communities of British acid grasslands

Air pollutants are recognised as important agents of ecosystem change but few studies consider the effects of multiple pollutants and their interactions. Here we use ordination, constrained cluster analysis and indicator value analyses to identify potential environmental controls on species composition, ecological groupings and indicator species in a gradient study of UK acid grasslands. The community composition of these grasslands is related to climate, grazing, ozone exposure and nitrogen deposition, with evidence for an interaction between the ecological impacts of base cation and nitrogen deposition. Ozone is a key agent in species compositional change but is not associated with a reduction in species richness or diversity indices, showing the subtly different drivers on these two aspects of ecosystem degradation. Our results demonstrate the effects of multiple interacting pollutants, which may collectively have a greater impact than any individual agent.     

Effectiveness of Management Interventions to Control Invasion by Rhododendron ponticum

Rhododendron ponticum is an invasive species in many countries, including the United Kingdom, Ireland, Belgium, and France. It poses a serious threat to native flora and fauna, as it is capable of altering entire seminatural communities through its vigorous spread. Control is essential if the conservation value of some communities, such as oak woodland and lowland heath, are to be successfully maintained. Commonly used interventions are herbicide application, herbicide application postcut, and cutting (manual or mechanical) alone. Various techniques have been developed to apply these interventions, but often retreatment of the area is required, increasing the cost of control. Here, we evaluate the effectiveness of some commonly used interventions for R. ponticum control using a systematic review methodology. Eleven studies provided data for statistical analysis. Meta-analyses of captured data show that postcut application of the herbicide Glyphosate or applying the herbicides Metsulfuron-methyl or Imazapyr (no cut) can effectively reduce a R. ponticum stand. There is insufficient available experimental evidence for effectiveness of any other intervention. The systematic review process has demonstrated the lack of replicated studies with controls or long-term monitoring and increases the call for more rigorous monitoring of all conservation management interventions. The quality of experimental evidence of the effectiveness of some interventions contrasts with the acceptance of their use through dissemination of experience. The collection and objective review of experience will require active collaboration of organizations concerned with R. ponticum control.     

Temporal and Spatial Trends in Nutrient and Sediment Loading to Lake Tahoe,California‐Nevada,USA

Since 1980, the Lake Tahoe Interagency Monitoring Program (LTIMP) has provided stream‐discharge and water quality data—nitrogen (N), phosphorus (P), and suspended sediment—at more than 20 stations in Lake Tahoe Basin streams. To characterize the temporal and spatial patterns in nutrient and sediment loading to the lake, and improve the usefulness of the program and the existing database, we have (1) identified and corrected for sources of bias in the water quality database; (2) generated synthetic datasets for sediments and nutrients, and resampled to compare the accuracy and precision of different load calculation models; (3) using the best models, recalculated total annual loads over the period of record; (4) regressed total loads against total annual and annual maximum daily discharge, and tested for time trends in the residuals; (5) compared loads for different forms of N and P; and (6) tested constituent loads against land use‐land cover (LULC) variables using multiple regression. The results show (1) N and P loads are dominated by organic N and particulate P; (2) there are significant long‐term downward trends in some constituent loads of some streams; and (3) anthropogenic impervious surface is the most important LULC variable influencing water quality in basin streams. Many of our recommendations for changes in water quality monitoring and load calculation methods have been adopted by the LTIMP.