Environmental risk evaluation of chemicals: achievements of the project and seeds for future--development of metrics for evaluating risks

Achievements of the research project entitled "Establishment of a scientific framework for the management of toxicity of chemicals based on environmental risk-benefit analysis" supported by the JST were introduced and reviewed, focusing on the development of the methodology for estimating risks; human health risks and ecological risks. The usefulness of loss of life expectancy as a metric for evaluating cancer and noncancer risks was demonstrated. To evaluate ecological risks, three metrics, 1/T, logT and T, developed based on the mean extinction time (T) of species were proposed. Then, their implication and feasibility were examined in terms of what ecological system should be conserved and how easily people can understand the implications of metrics. Protocols for estimating human health risks and ecological risks are illustrated.     

DNA-based prenatal carrier detection for group a xeroderma pigmentosum in a chorionic villus sample

DNA-based prenatal carrier detection of group A xeroderma pigmentosum (XP-A) is reported. Chorionic villus sampling was done at the tenth gestational week in a pregnant woman whose first child suffers from XP-A. Genomic DNAs from the villi, proband, and parents were PCR (polymerase chain reaction)-amplified using three sets of primers, because the PCR and a subsequent enzyme digestion with HphI, AlwNI, or MseI may detect the three most frequent mutations of the XP-A complementing gene (XPAC) in Japanese XP-A patients. The results showed that the proband is a homozygote and that the parents and fetus are heterozygotes for a base substitution at the 3′ acceptor site of intron 3 of XPAC, indicating that the fetus is a healthy carrier of XP-A. This is the first case of prenatal carrier detection of the disorder.     

Comprehensive Study on Enteric Viruses and Indicators in Surface Water in Kyoto,Japan, During 2014–2015 Season

Certain enteric viruses that are present in the water environment are potential risk factors of waterborne infections. To better understand the impact of viruses in water, both enteric viruses and their potential indicators should be comparatively investigated. In this study, occurrences of GI- and GII-noroviruses (NoVs), sapovirus (SaV), rotavirus (RoV), Aichi virus 1 (AiV-1), enterovirus (EV), and pepper mild mottle virus (PMMoV) were quantitatively determined in surface water samples in Japan. Additionally, the genotype distribution of GI- and GII-NoVs was determined using a next-generation amplicon sequencing. PMMoV was the most abundant virus regardless of season and location, indicating its usefulness as an indicator for the viral contamination of water. Other potential indicators, AiV and EV, were less abundant than GII-NoV. Viruses other than PMMoV showed seasonality, i.e., EV and other viruses (NoVs, SaV, RoV, and AiV-1) became prevalent during summer and winter, respectively. SaV showed a relatively high abundance at a location that was affected by untreated wastewater. Regarding NoV genotypes, GI.1, GI.2, GI.4, GI.5, GI.6, GII.3, GII.4, GII.6, and GII.17 were found from the surface water samples. GII.4 and GII.17 seemed to have contributed to the high abundance of GII-NoV in the samples. Interestingly, GII.17 strains became prevalent in the water samples before becoming prevalent among gastroenteritis patients in Japan. These findings provide further insights into the properties of viruses as contaminants in the water environment.     

Measurements of short-lived cosmic-ray-produced radionuclides in rainwater

Cosmic-ray-produced (CP) nuclides with half-lives shorter than 21h were measured in rainwater by ultra-low-background gamma spectrometry at Ogoya Underground Laboratory. As levels of CP nuclides are extremely low and their half-lives are very short, quick sampling methods for a large volume of rainwater and rapid chemical separations by ion exchange method were developed. The nuclides measured were short-lived (24)Na, (28)Mg, (38)S, (38)Cl, (39)Cl, as well as nuclides with longer half-lives (7)Be and (22)Na. The number of atoms of CP nuclides in rainwater were evaluated to range from 30 to 1500L(-1) for (24)Na (n=16, mean; 520 [6.7mBqL(-1)]), 80 to 600L(-1) for (28)Mg (n=13, mean; 260 [2.4mBqL(-1)]), 400 to 1900L(-1) for (39)Cl (n=6, mean; 1200 [250mBqL(-1)]), 1x10(6) to 4x10(7)L(-1) for (7)Be (n=16, mean; 7x10(6) [1.05BqL(-1)]) and 2x10(3) to 1x10(5)L(-1) for (22)Na (n=9, mean; 2x10(4) [0.2mBqL(-1)]).     

Soil characteristics under cash crop farming in upland areas of Sarawak,Malaysia

This study discusses soil fertility under perennial cash crop farming (para rubber, Hevea brasiliensis; black pepper, Piper nigrum; oil palm, Elaeis guineensis) conducted by local farmers and an oil palm estate in an upland area of Sarawak, Malaysia, in comparison with the surrounding secondary forests. In the farmlands of the local farmers, rubber farming was conducted without fertilizer application, while 2–5 t ha^?1 of NPK compounds were applied annually on pepper farms. Soils under rubber farming were acidic with poor nutrient contents, resembling soils in secondary forests. In pepper farms, soils were less acidic and showed high nutrient contents, especially with respect to available P and exchangeable Ca. This trend became stronger with increasing farming duration. Fertilizers applied around pepper vines appeared to migrate and spread across the fields. Bulk density and hardness of surface soils were higher in pepper farms than in secondary forests, indicating soil compaction due to field works. In the oil palm estate, annual fertilizer application rates were moderate at 0.4–0.8 t ha^?1 of NPK compound fertilizers. However, the soil properties in the oil palm estate were similar to those of the small-scale pepper farms. Close to the bases of the palms where fertilizers usually are applied, the contents of exchangeable Ca and available P were high. Nutrient uptake by the dense root systems of the palms seemed to prevent excessive loss of nutrients through leaching. Loss of soil organic matter and deterioration of soil physical properties were brought about by terrace bench construction, but the soils seemed to recover to some extent over time. In conclusion, technologies such as intercropping and the appropriate allocation of different crops to specific locations as well as the proper selection and dosage of fertilizers should be developed and adopted to improve fertilizer efficiency and prevent water pollution due to fertilizer wash-off from farmlands.     

Population maintenance of the short-lived shrub Sambucus in a deciduous forest

This study quantitatively clarifies the life history of a shrub, Sambucus racemosa ssp. sieboldiana, in an old-growth forest, the Ogawa Forest Reserve, Japan, by a demographic approach using a projection matrix model that incorporates interactions between demographic parameters and canopy height dynamics. S. racemosa is a common deciduous shrub in central Japan and is known to grow predominantly at forest edges or roadsides. This indicates that it is a highly light-demanding species, and occurrence in gaps in old-growth stands suggests its "fugitive," gap-dependent life history in old-growth forests. We found that one distinctive feature of this species was that its seedlings can survive well in shaded conditions by alternating stems every year like perennial herb species. Matrix model analyses demonstrated that S. racemosa can continuously regenerate under the present disturbance regime of this forest and is highly adaptable to the structural dynamics of the old-growth forest. The maturity of S. racemosa shrubs depends on their size, and nearly all (>90%) of the mature (reproducing) individuals were found in gaps or near gaps. But wide seed dispersal by birds and the ability to form both seed banks and seedling banks, the latter of which has been regarded as a common characteristic of shade-tolerant climax species, probably increase the species' chances to encounter canopy gaps. Dynamic-canopied matrix models showed that the greatest elasticity is with shaded seedling survival. The frequent stem alternation of shaded seedlings often makes the growth rate negative, but the survival rate of seedlings in low light awaiting new gap creation is remarkably high (0.93 yr(-1)). The lower survival rate of the larger individuals and smaller minimum size to start reproduction than other canopy or subcanopy shade-tolerant species indicate that S. racemosa has the potential to reproduce before the closure of the encountered gaps and to complete its life history rapidly.     

Water budget and the consequent duration of canopy carbon gain in a teak plantation in a dry tropical region: Analysis using a soil–plant–air continuum multilayer model

A soil–plant–air continuum multilayer model was used to numerically simulate canopy net assimilation (A_n), evapotranspiration (ET), and soil moisture in a deciduous teak plantation in a dry tropical climate of northern Thailand to examine the influence of soil drought on A_n. The timings of leaf flush and the end of the canopy duration period (CDP) were also investigated from the perspective of the temporal positive carbon gain. Two numerical experiments with different seasonal patterns of leaf area index (LAI) were carried out using above-canopy hydrometeorological data as input data. The first experiment involved seasonally varying LAI estimated based on time-series of radiative transmittance through the canopy, and the second experiment applied an annually constant LAI. The first simulation captured the measured seasonal changes in soil surface moisture; the simulated transpiration agreed with seasonal changes in heat pulse velocity, corresponding to the water use of individual trees, and the simulated A_n became slightly negative. However, in the second simulation, A_n became negative in the dry season because the decline in stomatal conductance due to severe soil drought limited the assimilation, and the simultaneous increase in leaf temperature increased dark respiration. Thus, these experiments revealed that the leaflessness in the dry season is reasonable for carbon gain and emphasized the unfavorable soil water status for carbon gain in the dry season. Examining the duration of positive A_n (DPA) in the second simulation showed that the start of the longest DPA (LDPA) in a year approached the timing of leaf flush in the teak plantation after the spring equinox. On the other hand, the end appeared earlier than that of all CDPs. This result is consistent with the sap flow stopping earlier than the complete leaf fall, implying that the carbon assimilation period ends before the completion of defoliation. The model sensitivity analysis in the second simulation suggests that a smaller LAI and slower maximum rate of carboxylation likely extend the LDPA because soil water from the surface to rooting depth is maintained longer at levels adequate for carbon gain by decreased canopy transpiration. The experiments also suggest that lower soil hydraulic conductivity and deeper rooting depth can postpone the end of the LDPA by increasing soil water retention and the soil water capacity, respectively.     

Composition of green turtle feeding aggregations along the Japanese archipelago: implications for changes in composition with current flow

In order to develop effective conservation strategies for endangered migratory species, the link between feeding and breeding grounds needs to be clarified. In this study, the genetic compositions of consecutive Japanese feeding aggregations of green turtles (Chelonia mydas) along the Kuroshio Current were examined by mixed-stock analyses of mitochondrial DNA control-region sequences. The results indicated that the southern feeding aggregation around Yaeyama (24.3°N, 124.0°E) was sourced from various Pacific rookeries in the Yaeyama, Ogasawara, Western Pacific, and Indian Oceans and Southeast Asia. Among northern feeding aggregations, the Ginoza (26.5°N, 128.0°E) aggregation was also sourced from the Western Pacific Ocean, but the Nomaike (31.4°N, 130.1°E), Muroto (33.2°N, 134.2°E), and Kanto (35.6°N, 140.5°E) aggregations were contributed mostly by the closer Ogasawara rookeries. The reduced contribution from tropical Pacific rookeries to northern feeding aggregations and the significant correlation between genetic differentiation and geographical distance matrices of feeding aggregations indicated that most hatchlings from these regions transported by the Kuroshio Current settle in upstream feeding grounds along the Japanese archipelago, implying that current flow influences the composition of feeding aggregations. Differences in the composition of relatively close neritic feeding aggregations have important conservation implications, for which both regional and multinational conservation strategies are needed.     

Stock assessment of landlocked ayu Plecoglossus altivelis altivelis in Japan through length-based models

Environmental Science and Pollution Research - Ayu Plecoglossus altivelis altivelis is a key commercially and culturally important freshwater osmeroid in Japan. Its native population is mostly an...